Name: Desulfotomaculum defluvii A5LFS102
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23185

Type strain:

Species: Desulfotomaculum defluvii

Strain Designation: A5LFS102

Culture col. no.: DSM 23699, JCM 14036, MTCC 7767

Strain history: T. Chakraborti <-- K. Suresh 5LFS102.

NCBI tax ID(s): 369958 (species)

Special Collections

Section

Desulfotomaculum defluvii A5LFS102 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from wet compost with black precipitate from the subsurface of a landfill.

Gram-negative
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulfotomaculum*
	Species	**Desulfotomaculum defluvii**
	Full Scientific Name (LPSN)	Desulfotomaculum defluvii Krishnamurthi et al. 2013

Synonym

"Desulforamulus defluvii"

Information on morphological and physiological properties Morphology

[Ref.: #30924]	Gram stain	negative

[Ref.: #30924]	Cell length	3 µm

[Ref.: #30924]	Cell width	0.6 µm

[Ref.: #30924]	Cell shape	rod-shaped

[Ref.: #30924]	Motility	no

[Ref.: #19339]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30924]	growth	25-42 °C
[Ref.: #30924]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #30924]			optimum	7.5
[Ref.: #30924]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19339]	Oxygen tolerance	anaerobe
[Ref.: #30924]	Oxygen tolerance	anaerobe

[Ref.: #30924]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30924]		NaCl		growth	0-2	%
[Ref.: #30924]		NaCl		optimum	0.75	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30924]		fructose ChEBI	+	carbon source
[Ref.: #30924]		glucose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19339]	Sample type/isolated from	wet compost with black precipitate from the subsurface of a landfill
[Ref.: #19339]	Geographic location (country and/or sea, region)	Chandigarh
[Ref.: #19339]	Country	India
[Ref.: #19339]	Country ISO 3 Code	IND
[Ref.: #19339]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Subsurface compost sample of a landfill
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Engineered	#Waste	#Landfill

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM184185 (>99% sequence identity) for Desulfotomaculum defluvii subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	31
Animal Samples	1
Plant Samples	5
Total Samples	78

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19339]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19339]	Desulfotomaculum defluvii partial 16S rRNA gene, type strain A5LFS102T	AM184185	1414	GenBank ENA	369958 tax ID

[Ref.: #19339]	GC-content	45.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30924]	GC-content	45.4 mol%
[Ref.: #67770]	GC-content	45.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #19339]

Culture collection no.

DSM 23699, JCM 14036, MTCC 7767

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill.	Krishnamurthi S, Spring S, Kumar PA, Mayilraj S, Klenk HP, Suresh K	Int J Syst Evol Microbiol	10.1099/ijs.0.047662-0	2012	*

References

#19339

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23699

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30924

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27254 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#27254

IJSEM 2290 2013 ( DOI 10.1099/ijs.0.047662-0 , PubMed 23159750 )

* These data were automatically processed and therefore are not curated

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