Strain identifier
BacDive ID: 23185
Type strain: 
Species: Desulfotomaculum defluvii
Strain Designation: A5LFS102
Strain history: T. Chakraborti <-- K. Suresh 5LFS102.
NCBI tax ID(s): 369958 (species)
version 9 (current version)
General
@ref: 19339
BacDive-ID: 23185
DSM-Number: 23699
keywords: 16S sequence, Bacteria, anaerobe, spore-forming, Gram-negative, rod-shaped
description: Desulfotomaculum defluvii A5LFS102 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from wet compost with black precipitate from the subsurface of a landfill.
NCBI tax id
- NCBI tax id: 369958
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19339 | <- S. Korpole, MTCC; A5LFS102 <- S. Korpole {2005} |
| 67770 | T. Chakraborti <-- K. Suresh 5LFS102. |
doi: 10.13145/bacdive23185.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptococcaceae
- genus: Desulfotomaculum
- species: Desulfotomaculum defluvii
- full scientific name: Desulfotomaculum defluvii Krishnamurthi et al. 2013
synonyms
- @ref: 20215
- synonym: Desulforamulus defluvii
@ref: 19339
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Peptococcaceae
genus: Desulfotomaculum
species: Desulfotomaculum defluvii
full scientific name: Desulfotomaculum defluvii Krishnamurthi et al. 2013
strain designation: A5LFS102
type strain: yes
Morphology
cell morphology
- @ref: 30924
- gram stain: negative
- cell length: 3 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 19339
- incubation period: 2-3 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 30924 | positive | growth | 25-42 |
| 30924 | positive | optimum | 37 |
| 67770 | positive | growth | 30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30924 | positive | growth | 6.5-8.5 | alkaliphile |
| 30924 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 19339 | anaerobe |
| 30924 | anaerobe |
spore formation
- @ref: 30924
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30924 | NaCl | positive | growth | 0-2 % |
| 30924 | NaCl | positive | optimum | 0.75 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30924 | 28757 | fructose | + | carbon source |
| 30924 | 17234 | glucose | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19339 | wet compost with black precipitate from the subsurface of a landfill | Chandigarh | India | IND | Asia |
| 67770 | Subsurface compost sample of a landfill |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Engineered | #Waste | #Landfill |
taxonmaps
- @ref: 69479
- File name: preview.99_67799.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15838;96_1353;97_36919;98_47776;99_67799&stattab=map
- Last taxonomy: Desulfotomaculum defluvii subclade
- 16S sequence: AM184185
- Sequence Identity:
- Total samples: 78
- soil counts: 31
- aquatic counts: 41
- animal counts: 1
- plant counts: 5
Safety information
risk assessment
- @ref: 19339
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19339
- description: Desulfotomaculum defluvii partial 16S rRNA gene, type strain A5LFS102T
- accession: AM184185
- length: 1414
- database: nuccore
- NCBI tax ID: 369958
GC content
| @ref | GC-content | method |
|---|---|---|
| 19339 | 45.4 | high performance liquid chromatography (HPLC) |
| 30924 | 45.4 | |
| 67770 | 45.4 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 19339
culture collection no.: DSM 23699, JCM 14036, MTCC 7767
literature
- topic: Phylogeny
- Pubmed-ID: 23159750
- title: Desulfotomaculum defluvii sp. nov., a sulfate-reducing bacterium isolated from the subsurface environment of a landfill.
- authors: Krishnamurthi S, Spring S, Kumar PA, Mayilraj S, Klenk HP, Suresh K
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.047662-0
- year: 2012
- mesh: Base Composition, DNA, Bacterial/genetics, Desulfotomaculum/*classification/genetics/isolation & purification, Fatty Acids/analysis, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Refuse Disposal, Sequence Analysis, DNA, Sulfates/metabolism, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19339 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23699) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23699 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30924 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27254 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |