Name: Actinoplanes hulinensis NEAU-M9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23115

Type strain:

Species: Actinoplanes hulinensis

Strain Designation: NEAU-M9

Culture col. no.: DSM 45728, BCC 72029, CGMCC 4.7036

Strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ,. Harbin, China; NEAU-M9 <- Y. Shen, School of Life Science, China

NCBI tax ID(s): 1144547 (species)

Special Collections

DSMZ

Section

Actinoplanes hulinensis NEAU-M9 is a spore-forming bacterium that was isolated from root of soybean Merr).

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	"Actinoplanes hulinensis"
	Full Scientific Name (LPSN)	Actinoplanes hulinensis Shen et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.707

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19349]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19349]	Sample type/isolated from	root of soybean (Glycine max (L.) Merr)
[Ref.: #19349]	Host species	Glycine max
[Ref.: #19349]	Geographic location (country and/or sea, region)	Heilongjiang province, Hulin
[Ref.: #19349]	Country	China
[Ref.: #19349]	Country ISO 3 Code	CHN
[Ref.: #19349]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19349]	Actinoplanes hulinensis strain NEAU-M9 16S ribosomal RNA gene, partial sequence	JQ073723	1511	GenBank ENA	1144547 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoplanes hulinensis NEAU-M9	GCA_019429605	scaffold	GenBank ENA	1144547 tax ID	*

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GC-content

67.90 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoplanes hulinensis NEAU-M9 NCBI: GCA_019429605.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoplanes hulinensis NEAU-M9 NCBI: GCA_019429605.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.707	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.477	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.856	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.905	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.25	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	61.333	no

Availability in culture collections External links

[Ref.: #19349]

Culture collection no.

DSM 45728, BCC 72029, CGMCC 4.7036

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes flavus sp. nov., a novel cellulase-producing actinobacterium isolated from coconut palm rhizosphere soil.	Luo X, Sun X, Huang Z, He C, Zhao J, Xiang W, Song J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004990	2021	*
Phylogeny	Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).	Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-012-9809-9	2012	*
Phylogeny	Actinoplanes subglobosus sp. nov., isolated from mixed deciduous forest soil.	Ngaemthao W, Chunhametha S, Suriyachadkun C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001440	2016	*

References

#19349

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45728

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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