Strain identifier
BacDive ID: 23115
Type strain: 
Species: Actinoplanes hulinensis
Strain Designation: NEAU-M9
Strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ,. Harbin, China; NEAU-M9 <- Y. Shen, School of Life Science, China
NCBI tax ID(s): 1144547 (species)
version 8.1 (current version)
General
@ref: 19349
BacDive-ID: 23115
DSM-Number: 45728
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Actinoplanes hulinensis NEAU-M9 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from root of soybean Merr).
NCBI tax id
- NCBI tax id: 1144547
- Matching level: species
strain history
- @ref: 19349
- history: <- C. Liu, School of Life Science, Northeast Agricultural Univ,. Harbin, China; NEAU-M9 <- Y. Shen, School of Life Science, China
doi: 10.13145/bacdive23115.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes hulinensis
- full scientific name: Actinoplanes hulinensis Shen et al. 2013
@ref: 19349
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes hulinensis
full scientific name: Actinoplanes hulinensis Shen et al. 2013
strain designation: NEAU-M9
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 19349
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45728.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 19349 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 19349 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium83.pdf | |
| 19349 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 19349
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 19349
- sample type: root of soybean (Glycine max (L.) Merr)
- host species: Glycine max
- geographic location: Heilongjiang province, Hulin
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
16S sequences
- @ref: 19349
- description: Actinoplanes hulinensis strain NEAU-M9 16S ribosomal RNA gene, partial sequence
- accession: JQ073723
- length: 1511
- database: ena
- NCBI tax ID: 1144547
Genome sequences
- @ref: 66792
- description: Actinoplanes hulinensis NEAU-M9
- accession: GCA_019429605
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1144547
GC content
- @ref: 19349
- GC-content: 67.90
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| flagellated | no | 89.165 | no |
| gram-positive | yes | 87.343 | no |
| anaerobic | no | 98.261 | no |
| aerobic | yes | 91.909 | no |
| halophile | no | 93.382 | no |
| spore-forming | yes | 88.652 | no |
| motile | yes | 63.324 | no |
| thermophile | no | 98.58 | yes |
| glucose-util | yes | 89.085 | no |
| glucose-ferment | no | 88.47 | no |
External links
@ref: 19349
culture collection no.: DSM 45728, BCC 72029, CGMCC 4.7036
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23114571 | Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr). | Shen Y, Liu C, Wang X, Zhao J, Jia F, Zhang Y, Wang L, Yang D, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9809-9 | 2012 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soybeans/*microbiology | Genetics |
| Phylogeny | 27550419 | Actinoplanes subglobosus sp. nov., isolated from mixed deciduous forest soil. | Ngaemthao W, Chunhametha S, Suriyachadkun C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001440 | 2016 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Forests, Micromonosporaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 34499595 | Actinoplanes flavus sp. nov., a novel cellulase-producing actinobacterium isolated from coconut palm rhizosphere soil. | Luo X, Sun X, Huang Z, He C, Zhao J, Xiang W, Song J, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004990 | 2021 | *Actinoplanes/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cellulase, China, Cocos/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19349 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45728) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45728 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |