Pantoea rodasii (DSM 26611, LMG 26273, BCC 571)

Name: Pantoea rodasii (DSM 26611, LMG 26273, BCC 571)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23003

Type strain

Strain Designation BD 943

Culture col. no. DSM 26611 LMG 26273 BCC 571 BD 943

NCBI tax ID(s) 1076549

Special Collections DSMZ Literature strains

History DSMZ <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa

Links

Pantoea rodasii BD 943 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Eucalyptus seedlings with symptoms of dieback and bacterial blight.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377273

DSM 26611,LMG 26273,BCC 581

@ref 20215

Last LPSN update 2026-05-29 08:30:21

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Pantoea

Species Pantoea rodasii

Full scientific name Pantoea rodasii Brady et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30290	negative	2.25 µm	1 µm	rod-shaped
125438	negative				100
125439	negative				93.415

Pigmentation

30290

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19153	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
19153	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19153	positive	growth	28
30290	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30290	facultative anaerobe
125439	aerobe	95.683

Spore formation

@ref	Spore formation	Confidence
30290
125439		98.422

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30290	30089 ChEBI	acetate	+	carbon source
30290	16449 ChEBI	alanine	+	carbon source
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
30290	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
30290	22653 ChEBI	asparagine	+	carbon source
30290	35391 ChEBI	aspartate	+	carbon source
30290	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	+	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	+	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
30290	15740 ChEBI	formate	+	carbon source
30290	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
30290	24148 ChEBI	galactonate	+	carbon source
30290	28260 ChEBI	galactose	+	carbon source
30290	24175 ChEBI	galacturonate	+	carbon source
30290	24265 ChEBI	gluconate	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
30290	17234 ChEBI	glucose	+	carbon source
30290	32323 ChEBI	glucuronamide	+	carbon source
30290	29987 ChEBI	glutamate	+	carbon source
30290	17754 ChEBI	glycerol	+	carbon source
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
30290	27570 ChEBI	histidine	+	carbon source
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
30290	18403 ChEBI	L-arabitol	+	carbon source
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
30290	24996 ChEBI	lactate	+	carbon source
30290	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
30290	29864 ChEBI	mannitol	+	carbon source
30290	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
30290	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
30290	37657 ChEBI	methyl D-glucoside	+	carbon source
30290	51850 ChEBI	methyl pyruvate	+	carbon source
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
30290	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
30290	26271 ChEBI	proline	+	carbon source
30290	26490 ChEBI	quinate	+	carbon source
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
30290	26546 ChEBI	rhamnose	+	carbon source
30290	15963 ChEBI	ribitol	+	carbon source
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
30290	17822 ChEBI	serine	+	carbon source
30290	30911 ChEBI	sorbitol	+	carbon source
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
30290	30031 ChEBI	succinate	+	carbon source
30290	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
30290	17748 ChEBI	thymidine	+	carbon source
30290	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
30290	53423 ChEBI	tween 40	+	carbon source
30290	53426 ChEBI	tween 80	+	carbon source
30290	16704 ChEBI	uridine	+	carbon source
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Enzymes

@ref	Value	Activity	Ec
30290	catalase	+	1.11.1.6

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
19153	-	+	+	-	+	+	+	-	+	-	+	+	+	+	-	+	-	+	+	-	-	-	+	-	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	+/-	-	-	-	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
19153	Eucalyptus seedlings with symptoms of dieback and bacterial blight	Eucalyptus	Colombia	COL	Middle and South America

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
19153		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM281119v1 assembly for Pantoea rodasii DSM 26611	contig	GCA_002811195	1076549.5	2871765707	1076549	72.18
66792	ASM209546v1 assembly for Pantoea rodasii LMG 26273	contig	GCA_002095465	1076549.4	2802429580	1076549	53.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19153	Pantoea rodasii strain LMG 26273 16S ribosomal RNA gene, complete sequence	JF295053	1344		1076549

GC content

30290

GC-content (mol%)53.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM281119v1 assembly for Pantoea rodasii DSM 26611
BV-BRC: 1076549.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.68	no
125439	gram_stain	BacteriaNetⓘ	negative	93.42	no
125439	motility	BacteriaNetⓘ	yes	59.96	no
125439	spore_formation	BacteriaNetⓘ	no	98.42	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pantoea rodasii strain DSM 26611
PATRIC: 1076549.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	98.79	no
125438	spore-forming	spore-formingⓘ	no	89.04	no
125438	aerobic	aerobicⓘ	no	66.32	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	74.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation, whole-genome sequencing, and annotation of two antibiotic-producing and antibiotic-resistant bacteria, Pantoea rodasii RIT 836 and Pseudomonas endophytica RIT 838, collected from the environment.	Tuytschaevers S, Aden L, Greene Z, Nixon C, Shaw W, Hatch D, Kumar G, Miranda RR, Hudson AO.	PLoS One	10.1371/journal.pone.0293943	2024
	Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans).	Tran PN, Tan NE, Lee YP, Gan HM, Polter SJ, Dailey LK, Hudson AO, Savka MA.	Genome Announc	10.1128/genomea.01319-15	2015
Transcriptome	Siderophore-producing Pantoea ferrattrahens sp. nov. isolated from a clinical specimen and Pantoea ferramans sp. nov. isolated from soil at the bottom of a pond.	Kutsuna R, Miyoshi-Akiyama T, Muramatsu Y, Hamada M, Tomida J, Kikuchi K, Kawamura Y.	Microbiol Immunol	10.1111/1348-0421.13097	2023
	Pantoea leporis sp. nov., isolated from the faecal material of a rabbit.	Kerin L, Lawson PA, Dutton N, Bevis DL, McLaughlin R.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005968	2023
Phylogeny	Jinshanibacter, a new genus of Budviciaceae: identification of Jinshanibacter zhutongyuii sp. nov. and Jinshanibacter xujianqingii sp. nov. isolated from cloacal content of snow finch (Montifringilla taczanowskii).	Ge Y, Wang B, Yang J, Lai XH, Zhang G, Lu S, Jin D, Huang Y, Cheng Y, Zhang X, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004653	2021
Phylogeny	Chania multitudinisentens gen. nov., sp. nov., an N-acyl-homoserine-lactone-producing bacterium in the family Enterobacteriaceae isolated from landfill site soil.	Ee R, Madhaiyan M, Ji L, Lim YL, Nor NM, Tee KK, Chen JW, Yin WF	Int J Syst Evol Microbiol	10.1099/ijsem.0.001025	2016
Phylogeny	Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus.	Brady CL, Cleenwerck I, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.032615-0	2011
Phylogeny	Pantoea endophytica sp. nov., novel endophytic bacteria isolated from maize planting in different geographic regions of northern China.	Gao JL, Xue J, Yan H, Tong S, Sayyar Khan M, Wang LW, Mao XJ, Zhang X, Sun JG	Syst Appl Microbiol	10.1016/j.syapm.2019.06.001	2019

References

#19153	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26611
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26631	IJSEM 1457 2012 ( DOI 10.1099/ijs.0.032615-0 , PubMed 21841003 )
#30290	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26631
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pantoea rodasii (DSM 26611, LMG 26273, BCC 571)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002811195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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