Name: Pantoea wallisii BD 946
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23005

Type strain:

Species: Pantoea wallisii

Strain Designation: BD 946

Culture col. no.: DSM 26586, BCC 682, LMG 26277

Strain history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa

NCBI tax ID(s): 1076551 (species)

SI-ID 377421

LMG 26277, BCC 682, DSM 26586

Section

Pantoea wallisii BD 946 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Eucalyptus seedlings showing symptoms of dieback and bacterial blight.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea wallisii**
	Full Scientific Name (LPSN)	Pantoea wallisii Brady et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30290]	Gram stain	negative

[Ref.: #30290]	Cell length	1.25 µm

[Ref.: #30290]	Cell width	1 µm

[Ref.: #30290]	Cell shape	rod-shaped

[Ref.: #30290]	Motility	yes

[Ref.: #30290]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19155]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #19155]

Culture medium growth

[Ref.: #19155]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19155]

Culture medium composition

expand / minimize

[Ref.: #19155]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #19155]

Culture medium growth

[Ref.: #19155]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19155]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19155]			growth	28 °C
[Ref.: #30290]			growth	28 °C

[Ref.: #19155]	Temperature range	mesophilic
[Ref.: #30290]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30290]

Oxygen tolerance

facultative anaerobe

[Ref.: #30290]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30290]	acetate ChEBI	+	carbon source
[Ref.: #30290]	alanine ChEBI	+	carbon source
[Ref.: #30290]	arabinose ChEBI	+	carbon source
[Ref.: #30290]	asparagine ChEBI	+	carbon source
[Ref.: #30290]	aspartate ChEBI	+	carbon source
[Ref.: #30290]	cellobiose ChEBI	+	carbon source
[Ref.: #30290]	citrate ChEBI	+	carbon source
[Ref.: #30290]	formate ChEBI	+	carbon source
[Ref.: #30290]	fructose ChEBI	+	carbon source
[Ref.: #30290]	fucose ChEBI	+	carbon source
[Ref.: #30290]	galactose ChEBI	+	carbon source
[Ref.: #30290]	galacturonate ChEBI	+	carbon source
[Ref.: #30290]	gluconate ChEBI	+	carbon source
[Ref.: #30290]	glucose ChEBI	+	carbon source
[Ref.: #30290]	glucuronamide ChEBI	+	carbon source
[Ref.: #30290]	glutamate ChEBI	+	carbon source
[Ref.: #30290]	glycerol ChEBI	+	carbon source
[Ref.: #30290]	L-arabitol ChEBI	+	carbon source
[Ref.: #30290]	lactate ChEBI	+	carbon source
[Ref.: #30290]	maltose ChEBI	+	carbon source
[Ref.: #30290]	mannitol ChEBI	+	carbon source
[Ref.: #30290]	mannose ChEBI	+	carbon source
[Ref.: #30290]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30290]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30290]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30290]	rhamnose ChEBI	+	carbon source
[Ref.: #30290]	serine ChEBI	+	carbon source
[Ref.: #30290]	succinate ChEBI	+	carbon source
[Ref.: #30290]	thymidine ChEBI	+	carbon source
[Ref.: #30290]	trehalose ChEBI	+	carbon source
[Ref.: #30290]	tween 40 ChEBI	+	carbon source
[Ref.: #30290]	tween 80 ChEBI	+	carbon source
[Ref.: #30290]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30290]		catalase	+	1.11.1.6

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ketogluconate metabolism	100	8 of 8
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	vitamin B6 metabolism	90.91	10 of 11
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	purine metabolism	82.98	78 of 94
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	oxidative phosphorylation	70.33	64 of 91
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar acids	68	17 of 25
[Ref.: #66794]	allantoin degradation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	peptidoglycan biosynthesis	66.67	10 of 15
[Ref.: #66794]	lipid A biosynthesis	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	carotenoid biosynthesis	31.82	7 of 22
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19155]	Sample type/isolated from	Eucalyptus seedlings showing symptoms of dieback and bacterial blight
[Ref.: #19155]	Host species	Eucalyptus
[Ref.: #19155]	Country	South Africa
[Ref.: #19155]	Country ISO 3 Code	ZAF
[Ref.: #19155]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF295057 (>99% sequence identity) for Pantoea from Microbeatlas

Aquatic Samples	3
Soil Samples	6
Animal Samples	80
Plant Samples	35
Total Samples	124

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19155]	Pathogenicity (plant)	yes
[Ref.: #19155]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19155]	Pantoea wallisii strain LMG 26277 16S ribosomal RNA gene, complete sequence	JF295057	1344	ENA	1076551 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pantoea wallisii LMG 26277	GCA_002095485	contig	GenBank	1076551 tax ID	*
[Ref.: #66792]	Pantoea wallisii strain LMG 26277	1076551.3	wgs	PATRIC	1076551 tax ID	*

[Ref.: #30290]

GC-content

55.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea wallisii strain LMG 26277 PATRIC: 1076551.3
[Ref.: #69480]	motile	yes	90.704	yes
[Ref.: #69480]	flagellated	no	71.881	no
[Ref.: #69480]	gram-positive	no	97.913	yes
[Ref.: #69480]	anaerobic	no	98.684	yes
[Ref.: #69480]	aerobic	no	61.391	yes
[Ref.: #69480]	halophile	no	84.175	no
[Ref.: #69480]	spore-forming	no	92.947	no
[Ref.: #69480]	thermophile	no	99.471	no
[Ref.: #69480]	glucose-util	yes	96.408	yes
[Ref.: #69480]	glucose-ferment	yes	89.667	no

Availability in culture collections External links

[Ref.: #19155]

Culture collection no.

DSM 26586, BCC 682, LMG 26277

[Ref.: #87249]

SI-ID 377421

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus.	Brady CL, Cleenwerck I, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.032615-0	2011	*

References

#19155

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26586

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30290

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26631 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87249

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377421.1 )

#26631

IJSEM 1457 2012 ( DOI 10.1099/ijs.0.032615-0 , PubMed 21841003 )

* These data were automatically processed and therefore are not curated

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Pantoea wallisii strain LMG 26277

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