Pantoea wallisii (DSM 26586, BCC 682, LMG 26277)

Name: Pantoea wallisii (DSM 26586, BCC 682, LMG 26277)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23005

Type strain

Strain Designation BD 946

Culture col. no. DSM 26586 BCC 682 LMG 26277 BD 946

NCBI tax ID(s) 1076551

Special Collections DSMZ Literature strains

History DSMZ <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa

Links

Pantoea wallisii BD 946 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Eucalyptus seedlings showing symptoms of dieback and bacterial blight.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 377421

LMG 26277,BCC 682,DSM 26586

@ref 20215

Last LPSN update 2026-05-29 08:30:21

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Pantoea

Species Pantoea wallisii

Full scientific name Pantoea wallisii Brady et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30290	negative	1.25 µm	1 µm	rod-shaped
125439	negative				96.71
125438	negative				100

Pigmentation

30290

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
19155	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
19155	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19155	positive	growth	28
30290	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30290	facultative anaerobe
125439	aerobe	96.823

Spore formation

@ref	Spore formation	Confidence
30290
125439		98.604

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30290	30089 ChEBI	acetate	+	carbon source
30290	16449 ChEBI	alanine	+	carbon source
30290	22599 ChEBI	arabinose	+	carbon source
30290	22653 ChEBI	asparagine	+	carbon source
30290	35391 ChEBI	aspartate	+	carbon source
30290	17057 ChEBI	cellobiose	+	carbon source
30290	16947 ChEBI	citrate	+	carbon source
30290	15740 ChEBI	formate	+	carbon source
30290	28757 ChEBI	fructose	+	carbon source
30290	33984 ChEBI	fucose	+	carbon source
30290	28260 ChEBI	galactose	+	carbon source
30290	24175 ChEBI	galacturonate	+	carbon source
30290	24265 ChEBI	gluconate	+	carbon source
30290	17234 ChEBI	glucose	+	carbon source
30290	32323 ChEBI	glucuronamide	+	carbon source
30290	29987 ChEBI	glutamate	+	carbon source
30290	17754 ChEBI	glycerol	+	carbon source
30290	18403 ChEBI	L-arabitol	+	carbon source
30290	24996 ChEBI	lactate	+	carbon source
30290	17306 ChEBI	maltose	+	carbon source
30290	29864 ChEBI	mannitol	+	carbon source
30290	37684 ChEBI	mannose	+	carbon source
30290	37657 ChEBI	methyl D-glucoside	+	carbon source
30290	51850 ChEBI	methyl pyruvate	+	carbon source
30290	506227 ChEBI	N-acetylglucosamine	+	carbon source
30290	26546 ChEBI	rhamnose	+	carbon source
30290	17822 ChEBI	serine	+	carbon source
30290	30031 ChEBI	succinate	+	carbon source
30290	17748 ChEBI	thymidine	+	carbon source
30290	27082 ChEBI	trehalose	+	carbon source
30290	53423 ChEBI	tween 40	+	carbon source
30290	53426 ChEBI	tween 80	+	carbon source
30290	16704 ChEBI	uridine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30290	catalase	+	1.11.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	ketogluconate metabolism	100	8 of 8
66794	quinate degradation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	taurine degradation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	suberin monomers biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	vitamin B6 metabolism	90.91	10 of 11
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	purine metabolism	82.98	78 of 94
66794	pentose phosphate pathway	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	glutamate and glutamine metabolism	75	21 of 28
66794	CMP-KDO biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	degradation of hexoses	72.22	13 of 18
66794	citric acid cycle	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	oxidative phosphorylation	70.33	64 of 91
66794	myo-inositol biosynthesis	70	7 of 10
66794	starch degradation	70	7 of 10
66794	alanine metabolism	68.97	20 of 29
66794	degradation of sugar acids	68	17 of 25
66794	allantoin degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	peptidoglycan biosynthesis	66.67	10 of 15
66794	lipid A biosynthesis	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methionine metabolism	65.38	17 of 26
66794	lipid metabolism	64.52	20 of 31
66794	arginine metabolism	62.5	15 of 24
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	glycolysis	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tyrosine metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	metabolism of disaccharids	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	ascorbate metabolism	45.45	10 of 22
66794	phenol degradation	45	9 of 20
66794	d-mannose degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	arachidonic acid metabolism	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	carotenoid biosynthesis	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
19155	Eucalyptus seedlings showing symptoms of dieback and bacterial blight	Eucalyptus	South Africa	ZAF	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF295057 (>99% sequence identity) for Pantoea from Microbeatlas

Aquatic Samples	3
Soil Samples	6
Animal Samples	80
Plant Samples	35
Total Samples	124

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
19155		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM209548v1 assembly for Pantoea wallisii LMG 26277	contig	GCA_002095485	1076551.3	8117269417	1076551	41.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19155	Pantoea wallisii strain LMG 26277 16S ribosomal RNA gene, complete sequence	JF295057	1344		1076551

GC content

30290

GC-content (mol%)55.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM209548v1 assembly for Pantoea wallisii LMG 26277
BV-BRC: 1076551.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	96.71	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	96.82	no
125439	motility	BacteriaNetⓘ	yes	71.89	no
125439	spore_formation	BacteriaNetⓘ	no	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pantoea wallisii strain LMG 26277
PATRIC: 1076551.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	99.36	no
125438	spore-forming	spore-formingⓘ	no	88.72	no
125438	aerobic	aerobicⓘ	no	64.01	yes
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	75.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Discovery and characterization of a novel pathogen Erwinia pyri sp. nov. associated with pear dieback: taxonomic insights and genomic analysis.	He L, Huang R, Chen H, Zhao L, Zhang Z.	Front Microbiol	10.3389/fmicb.2024.1365685	2024
Phylogeny	Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus.	Brady CL, Cleenwerck I, van der Westhuizen L, Venter SN, Coutinho TA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.032615-0	2011

References

#19155	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26586
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26631	IJSEM 1457 2012 ( DOI 10.1099/ijs.0.032615-0 , PubMed 21841003 )
#30290	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26631
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pantoea wallisii (DSM 26586, BCC 682, LMG 26277)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002095485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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