[Ref.: #4876] |
Sample type/isolated from |
gastrointestinal tract of Atlantic salmon (Salmo salar) |
[Ref.: #4876] |
Host species |
Salmo salar |
[Ref.: #4876] |
Country |
Sweden |
[Ref.: #4876] |
Country ISO 3 Code |
SWE |
[Ref.: #4876] |
Continent |
Europe |
|
[Ref.: #50699] |
Sample type/isolated from |
Salmon gut,Salmo salar |
[Ref.: #50699] |
Geographic location (country and/or sea, region) |
Göteborg |
[Ref.: #50699] |
Country |
Sweden |
[Ref.: #50699] |
Country ISO 3 Code |
SWE |
[Ref.: #50699] |
Continent |
Europe |
|
[Ref.: #67770] |
Sample type/isolated from |
Intestine of Atlantic salmon |
|
[Ref.: #120117] |
Sample type/isolated from |
Animal, Salmon, gut |
[Ref.: #120117] |
Geographic location (country and/or sea, region) |
Göteborg |
[Ref.: #120117] |
Country |
Sweden |
[Ref.: #120117] |
Country ISO 3 Code |
SWE |
[Ref.: #120117] |
Continent |
Europe |
* marker position based on {}
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Isolation sources categories |
#Host |
#Fishes |
#Salmonidae |
#Host Body-Site |
#Gastrointestinal tract |
- |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Carnobacterium inhibens gene for 16S ribosomal RNA, partial sequence, strain: JCM 16168 |
LC258160 |
1459 |
|
147709 tax ID |
[Ref.: #4876] |
Carnobacterium inhibens subsp. inhibens DSM 13024 16S rRNA gene, type strain K1T |
Z73313 |
1524 |
|
1449339 tax ID |
[Ref.: #124043] |
Carnobacterium inhibens subsp. inhibens DSM 13024 strain W233 16S ribosomal RNA gene, partial sequence. |
OP344196 |
1369 |
|
1449339 tax ID |
* |
[Ref.: #124043] |
Carnobacterium inhibens subsp. inhibens DSM 13024 strain W301 16S ribosomal RNA gene, partial sequence. |
OP344253 |
1365 |
|
1449339 tax ID |
* |
[Ref.: #124043] |
Carnobacterium inhibens subsp. inhibens DSM 13024 strain W302 16S ribosomal RNA gene, partial sequence. |
OP344254 |
1350 |
|
1449339 tax ID |
* |
[Ref.: #124043] |
Carnobacterium inhibens subsp. inhibens DSM 13024 strain W303 16S ribosomal RNA gene, partial sequence. |
OP344255 |
1349 |
|
1449339 tax ID |
* |
[Ref.: #124043] |
Carnobacterium inhibens subsp. inhibens DSM 13024 strain W318 16S ribosomal RNA gene, partial sequence. |
OP344268 |
1398 |
|
1449339 tax ID |
* |
[Ref.: #20218] |
Carnobacterium inhibens subsp. inhibens DSM 13024 large 16S-23S rRNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence |
AY170837 |
445 |
|
147709 tax ID |
* |
[Ref.: #20218] |
Carnobacterium inhibens subsp. inhibens DSM 13024 medium 16S-23S rRNA intergenic spacer and tRNA-Ala gene, complete sequence |
AY170838 |
325 |
|
147709 tax ID |
* |
[Ref.: #20218] |
Carnobacterium inhibens subsp. inhibens DSM 13024 small 16S-23S rRNA intergenic spacer, complete sequence |
AY170839 |
217 |
|
147709 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Carnobacterium inhibens subsp. inhibens DSM 13024 K1 |
GCA_000746825 |
contig |
|
1449339 tax ID |
* |
[Ref.: #66792] |
Carnobacterium inhibens DSM 13024 strain K1 |
1449339.3 |
wgs |
|
1449339 tax ID |
* |
[Ref.: #66792] |
Carnobacterium inhibens K1, DSM 13024 |
2574179783 |
draft |
|
1449339 tax ID |
* |
|
|
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Availability in culture collections External links
[Ref.: #4876] |
Culture collection no. |
DSM 13024, CCUG 31728, CIP 106863, JCM 12490, JCM 16168, CCM 7006, CECT 5963 |
[Ref.: #71826] |
SI-ID 49389
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Carnobacterium inhibens sp. nov., isolated from the intestine of Atlantic salmon (Salmo salar). |
Joborn A, Dorsch M, Olsson JC, Westerdahl A, Kjelleberg S |
Int J Syst Bacteriol |
10.1099/00207713-49-4-1891 |
1999 |
* |
|
- References
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#4876 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 13024
|
-
-
-
#38657 |
; Curators of the CIP;
|
-
#50699 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 31728
|
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-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68381 |
Automatically annotated from API rID32STR .
|
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#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
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#71826 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID49389.1 )
|
-
#120117 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 106863
|
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#124043 |
Dr. Isabel Schober, Dr. Julia Koblitz:
Data extracted from sequence databases, automatically matched based on designation and taxonomy .
|
- * These data were automatically processed and therefore are not curated
Change proposal
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