Name: Carnobacterium gallinarum MT44
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2255

Type strain:

Species: Carnobacterium gallinarum

Strain Designation: MT44, MT 44

Culture col. no.: DSM 4847, ATCC 49517, NCFB 2766, CCUG 30095, CCM 4114, LMG 9841, CIP 103160, JCM 12517, CECT 5958, NCCB 91132, NCIMB 12848, NRRL B-14832

Strain history: CIP <- 1988, NCFB: strain MT 44

NCBI tax ID(s): 1449338 (strain), 2749 (species)

SI-ID 1686

LMG 9841, ATCC 49517, CCM 4114, CCUG 30095, CIP 103160, DSM 4847, NCFB 2766, NCIMB 12848, NCCB 91132, LMD 91.132, CECT 5958, NRRL B-14832, JCM 12517

Other strains from Carnobacterium gallinarum

C. gallinarum 667-85, CIP 101839

Section

Carnobacterium gallinarum MT44 is an aerobe, mesophilic bacterium that was isolated from ice slush from around chicken carcasses.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Carnobacterium*
	Species	**Carnobacterium gallinarum**
	Full Scientific Name (LPSN)	Carnobacterium gallinarum Collins et al. 1987

Information on morphological and physiological properties Morphology

[Ref.: #119513]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119513]	Cell shape	rod-shaped

[Ref.: #119513]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.324

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1848]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #1848]

Culture medium growth

[Ref.: #1848]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1848]

Culture medium composition

expand / minimize

[Ref.: #35493]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35493]

Culture medium growth

[Ref.: #35493]

Culture medium composition

expand / minimize

[Ref.: #119513]

Culture medium

CIP Medium 3

[Ref.: #119513]

Culture medium growth

[Ref.: #119513]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119513]

Culture medium

CIP Medium 72

[Ref.: #119513]

Culture medium growth

[Ref.: #119513]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1848]	growth	30 °C
[Ref.: #35493]	growth	22 °C
[Ref.: #49898]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #1848]	Temperature range	mesophilic
[Ref.: #35493]	Temperature range	psychrophilic
[Ref.: #49898]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49898]	Oxygen tolerance	aerobe
[Ref.: #119513]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.935

[Ref.: #1848]	Murein short key	A31
[Ref.: #1848]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119513]	nitrate ChEBI	-	reduction
[Ref.: #119513]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119513]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119513]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119513]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119513]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119513]	9184	not determinedn.d.	-	-	-	-	+	+/-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	+/-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	-	-	+	+/-	-	+	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119513]	7397	-	-	+	+	-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1848]	Sample type/isolated from	ice slush from around chicken carcasses

[Ref.: #49898]	Sample type/isolated from	Ice slush from around chicken carcasse

[Ref.: #67770]	Sample type/isolated from	Ice slush around chicken carcasses

[Ref.: #119513]	Sample type/isolated from	Animal, Ice slush around chicken carcasses
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Host	#Birds	#Chicken

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC153546 (>99% sequence identity) for Carnobacterium from Microbeatlas

Aquatic Samples	362
Soil Samples	110
Animal Samples	895
Plant Samples	108
Total Samples	1475

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1848]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119513]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Carnobacterium gallinarum gene for 16S ribosomal RNA, partial sequence, strain: JCM 12517	LC153546	1488	ENA	2749 tax ID
[Ref.: #20218]	Carnobacterium gallinarum strain ATCC 49517 16S ribosomal RNA gene, partial sequence	JF749287	809	ENA	2749 tax ID	*
[Ref.: #20218]	Carnobacterium gallinarum 16S rRNA gene, strain DSM 4847(T)	AJ387905	1546	ENA	2749 tax ID	*
[Ref.: #20218]	Carnobacterium gallinarum partial 16S ribosomal RNA	X54269	1492	ENA	2749 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Carnobacterium gallinarum DSM 4847 MT44	GCA_000744375	contig	GenBank	1449338 tax ID	*
[Ref.: #66792]	Carnobacterium gallinarum DSM 4847 strain MT44	1449338.3	wgs	PATRIC	1449338 tax ID	*
[Ref.: #66792]	Carnobacterium gallinarum MT44, DSM 4847	2576861831	draft	JGI IMG/M	2749 tax ID	*

[Ref.: #1848]	GC-content	34.3 mol%
[Ref.: #67770]	GC-content	34.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Carnobacterium gallinarum DSM 4847 strain MT44 PATRIC: 1449338.3
[Ref.: #69481]	spore-forming	yes	87	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Carnobacterium gallinarum DSM 4847 strain MT44 PATRIC: 1449338.3
[Ref.: #69480]	motile	no	92.941	no
[Ref.: #69480]	gram-positive	yes	95.282	no
[Ref.: #69480]	anaerobic	no	92.644	yes
[Ref.: #69480]	halophile	yes	76.524	no
[Ref.: #69480]	spore-forming	no	74.955	no
[Ref.: #69480]	thermophile	no	99.725	yes
[Ref.: #69480]	glucose-util	yes	85.422	no
[Ref.: #69480]	aerobic	no	88.874	yes
[Ref.: #69480]	flagellated	no	96.181	no
[Ref.: #69480]	glucose-ferment	yes	83.024	no

Availability in culture collections External links

[Ref.: #1848]

Culture collection no.

DSM 4847, ATCC 49517, NCFB 2766, CCUG 30095, CCM 4114, LMG 9841, CIP 103160, JCM 12517, CECT 5958, NCCB 91132, NCIMB 12848, NRRL B-14832

[Ref.: #71814]

SI-ID 1686

References

#1848

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4847

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35493 ; Curators of the CIP;
#49898 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30095

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71814

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1686.1 )

#119513 Collection of Institut Pasteur ; Curators of the CIP; CIP 103160
* These data were automatically processed and therefore are not curated

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Carnobacterium gallinarum DSM 4847 strain MT44

Carnobacterium gallinarum DSM 4847 strain MT44

Change proposal

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