Strain identifier

BacDive ID: 2255

Type strain: Yes

Species: Carnobacterium gallinarum

Strain Designation: MT44

Culture col. no.: DSM 4847, ATCC 49517, NCFB 2766, CCUG 30095, CCM 4114, LMG 9841, CIP 103160, JCM 12517

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General

@ref: 1848

BacDive-ID: 2255

DSM-Number: 4847

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Carnobacterium gallinarum MT44 is an aerobe, mesophilic bacterium that was isolated from ice slush from around chicken carcasses.

strain history

doi: 10.13145/bacdive2255.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Carnobacterium
  • species: Carnobacterium gallinarum
  • full scientific name: Carnobacterium gallinarum Collins et al. 1987

@ref: 1848

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Carnobacterium

species: Carnobacterium gallinarum

full scientific name: Carnobacterium gallinarum Collins et al. 1987

strain designation: MT44

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1848TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
35493MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
1848positivegrowth30mesophilic
35493positivegrowth22psychrophilic
49898positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49898
  • oxygen tolerance: aerobe

murein

  • @ref: 1848
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

Isolation, sampling and environmental information

isolation

@refsample type
1848ice slush from around chicken carcasses
49898Ice slush from around chicken carcasse

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Ice
#Host#Birds#Chicken

Safety information

risk assessment

  • @ref: 1848
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Carnobacterium gallinarum strain ATCC 49517 16S ribosomal RNA gene, partial sequenceJF749287809ena2749
20218Carnobacterium gallinarum 16S rRNA gene, strain DSM 4847(T)AJ3879051546ena2749
20218Carnobacterium gallinarum partial 16S ribosomal RNAX542691492ena2749

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Carnobacterium gallinarum DSM 4847 MT44GCA_000744375contigncbi1449338
66792Carnobacterium gallinarum DSM 4847 strain MT441449338.3wgspatric1449338
66792Carnobacterium gallinarum MT44, DSM 48472576861831permanentimg2749

GC content

  • @ref: 1848
  • GC-content: 34.3

External links

@ref: 1848

culture collection no.: DSM 4847, ATCC 49517, NCFB 2766, CCUG 30095, CCM 4114, LMG 9841, CIP 103160, JCM 12517

straininfo link

@refpassport
20218http://www.straininfo.net/strains/6811
20218http://www.straininfo.net/strains/6807
20218http://www.straininfo.net/strains/6812

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1848Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4847)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4847
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35493Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14927
49898Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30095)https://www.ccug.se/strain?id=30095
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)