Campylobacter ureolyticus (DSM 20703, ATCC 33387, CCUG 7319)

Name: Campylobacter ureolyticus (DSM 20703, ATCC 33387, CCUG 7319)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2102

Type strain

Strain Designation EDMH-1

Culture col. no. DSM 20703 ATCC 33387 CCUG 7319 LMG 6451 NCTC 10941 1 more

NCBI tax ID(s) 1121102 827

Special Collections DSMZ CCUG

History DSMZ <- NCTC; NCTC 10941 (Bacteroides corrodens) <- F. L. Jackson; EDMH-1

Links

Campylobacter ureolyticus EDMH-1 is an anaerobe human pathogen that was isolated from amniotic fluid.

anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 1216

LMG 6451,ATCC 33387,CCUG 7319,NCTC 10941,DSM 20703

@ref 20215

Last LPSN update 2026-05-29 08:25:24

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter ureolyticus

Full scientific name Campylobacter ureolyticus (Jackson and Goodman 1978) Vandamme et al. 2010

Synonyms (1)

Bacteroides ureolyticus

BacDive ID	Other strains from **Campylobacter ureolyticus** (35)	Type strain
141784	C. ureolyticus CCUG 6738
141987	C. ureolyticus CCUG 9510 D
141995	C. ureolyticus CCUG 9596 B
141997	C. ureolyticus CCUG 9666 C
142025	C. ureolyticus CCUG 10017 B
142335	C. ureolyticus CCUG 11762
142881	C. ureolyticus CCUG 15536 D
143334	C. ureolyticus CCUG 18470
143421	C. ureolyticus CCUG 19065
143826	C. ureolyticus CCUG 21314
144599	C. ureolyticus CCUG 25886
144696	C. ureolyticus CCUG 26306
145128	C. ureolyticus CCUG 27722
145129	C. ureolyticus CCUG 27723
145752	C. ureolyticus CCUG 29476
146428	C. ureolyticus CCUG 31113
146491	C. ureolyticus CCUG 31312
146889	C. ureolyticus CCUG 32378, LMG 11766
148133	C. ureolyticus CCUG 34880
149021	C. ureolyticus CCUG 36739 A
149583	C. ureolyticus CCUG 38011
150127	C. ureolyticus CCUG 39053 A
150197	C. ureolyticus CCUG 39261 A
151385	C. ureolyticus CCUG 44020 B
151553	C. ureolyticus CCUG 44295
151554	C. ureolyticus CCUG 44296
152135	C. ureolyticus CCUG 45874
153131	C. ureolyticus CCUG 48545
153380	C. ureolyticus CCUG 49390
153983	C. ureolyticus CCUG 51835 B
154032	C. ureolyticus CCUG 52055
155273	C. ureolyticus CCUG 57163
155778	C. ureolyticus CCUG 59288
155848	C. ureolyticus CCUG 59468
155986	C. ureolyticus CCUG 59897

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.983
125439	negative	99.108

Colony morphology

@ref	Incubation period
8781	1-2 days
44971	2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8781	BTU MEDIUM (DSMZ Medium 413)	Medium recipe at MediaDive	Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water
8781	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8781	CHOPPED MEAT MEDIUM (DSMZ Medium 78)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 487.805 g/l Casitone 29.2683 g/l Agar 14.6341 g/l K2HPO4 4.87805 g/l Yeast extract 4.87805 g/l L-Cysteine HCl 0.487805 g/l Ethanol 0.185366 g/l Haemin 0.00487805 g/l Resazurin 0.00097561 g/l Vitamin K3 0.000487805 g/l Vitamin K1 NaOH Distilled water Water

Culture temp

@ref	Growth	Type	Temperature (°C)
8781	positive	growth	37
44971	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8781	anaerobe
44971	anaerobe
125439	facultative anaerobe	94.9

Spore formation

@ref	Spore formation	Confidence
125438		95.048
125439		97.833

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	-	assimilation	from API CAM
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68367	17057 ChEBI	cellobiose	-	builds acid from	from API 20A
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68367	17634 ChEBI	D-glucose	-	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	-	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	-	builds acid from	from API 20A
68367	4853 ChEBI	esculin	-	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	-	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	-	builds acid from	from API 20A
68367	17716 ChEBI	lactose	-	builds acid from	from API 20A
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68367	17306 ChEBI	maltose	-	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68373	17272 ChEBI	propionate	-	assimilation	from API CAM
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	-	builds acid from	from API 20A
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
68373	30031 ChEBI	succinate	-	assimilation	from API CAM
68367	17992 ChEBI	sucrose	-	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68373	16199 ChEBI	urea	+	hydrolysis	from API CAM
68380	16199 ChEBI	urea	+	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	+	hydrolysis	from API 20A

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite
68373	16136 ChEBI	hydrogen sulfide	from API CAM
68380	35581 ChEBI	indole	from API rID32A
68367	35581 ChEBI	indole	from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68367	beta-glucosidase	-	3.2.1.21	from API 20A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
8781	catalase	-	1.11.1.6
68373	catalase	-	1.11.1.6	from API CAM
68367	catalase	-	1.11.1.6	from API 20A
8781	cytochrome-c oxidase	-	1.9.3.1
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	+	3.5.1.5	from API rID32A
68373	urease	+	3.5.1.5	from API CAM
68367	urease	+	3.5.1.5	from API 20A

Fatty acid profile

Metadata FA analysis

@ref

44971

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	60.6	17.824
C16:0	7.8	16
C16:0 3OH	6.6	17.52
C14:0 3OH/C16:1 ISO I	6.2	15.485
C18:0	6	18
C14:0	5.5	14
C12:0	4.2	12
unknown 14.503	2.5	14.503
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724

Metadata FA analysis

@ref

44971

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	65.2	17.824
C14:0 3OH/C16:1 ISO I	7.9	15.485
C12:0	6.1	12
C14:0	5.1	14
C16:0	5	16
C16:0 3OH	4.4	17.52
C18:0	2.2	18
C13:1 at 12-13	1.6	12.931
C12:0 ALDE ?	1.2	10.915
C18:2 ω6,9c/C18:0 ANTE	1.1	17.724

Metadata FA analysis

@ref

44971

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	57.7	17.824
C14:0 3OH/C16:1 ISO I	10.5	15.485
C16:0	8.6	16
C14:0	8.2	14
C12:0	6.8	12
C18:0	2.5	18
C16:1 ω7c	1.8	15.819
C18:2 ω6,9c/C18:0 ANTE	1.4	17.724
unknown 14.503	0.9	14.503
C18:1 ω9c	0.6	17.769
Unidentified	0.5	13.94
Unidentified	0.3	13.737
C18:1 ω5c	0.3	17.919

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
8781	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
8781	+	+	+	+	-	+	-	+/-	+	+	+	-	-	-	-	-	-	-	-	-	-
8781	+	-	-	-	-	-	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8781	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
8781	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
8781	amniotic fluid	Homo sapiens	Canada	CAN	North America
44971	Amniotic fluid	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence HM007586 (>99% sequence identity) for Campylobacter ureolyticus subclade from Microbeatlas

Aquatic Samples	1261
Soil Samples	1363
Animal Samples	50004
Plant Samples	238
Total Samples	52866

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
8781			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1337222v1 assembly for Campylobacter ureolyticus LMG 6451	complete	GCA_013372225	827.97	8113759344	827	98.77
124043	ASM1676689v1 assembly for Campylobacter ureolyticus FDAARGOS_1102	chromosome	GCA_016766895	827.100		827	88.32
66792	53694_D01 assembly for Campylobacter ureolyticus NCTC10941	contig	GCA_900460885	827.23	2823244376	827	76.05
66792	ASM37460v1 assembly for Campylobacter ureolyticus DSM 20703	scaffold	GCA_000374605	1121102.3	2517572240	1121102	69.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Bacteroides ureolyticus strain DSM 20703 16S ribosomal RNA gene, partial sequence	HM007586	1312		1121102
8781	Campylobacter ureolyticus strain ATCC 33387 16S ribosomal RNA gene, partial sequence	L04321	1453		827

GC content

@ref	GC-content (mol%)	Method
8781	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1337222v1 assembly for Campylobacter ureolyticus LMG 6451
BV-BRC: 827.97

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.11	no
125439	motility	BacteriaNetⓘ	no	65.36	no
125439	spore_formation	BacteriaNetⓘ	no	97.83	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter ureolyticus LMG 6451
NCBI: GCA_013372225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	yes	61.98	yes
125438	aerobic	aerobicⓘ	no	90.77	yes
125438	spore-forming	spore-formingⓘ	no	95.05	no
125438	thermophilic	thermophileⓘ	no	87.90	yes
125438	flagellated	motile2+ⓘ	no	72.06	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Influence of species composition and cultivation condition on peri-implant biofilm dysbiosis in vitro.	Heine N, Bittroff K, Szafranski SP, Duitscher M, Behrens W, Vollmer C, Mikolai C, Kommerein N, Debener N, Frings K, Heisterkamp A, Scheper T, Torres-Mapa ML, Bahnemann J, Stiesch M, Doll-Nikutta K.	Front Oral Health	10.3389/froh.2025.1649419	2025
	Effect of Dentifrice Ingredients on Volume and Vitality of a Simulated Periodontal Multispecies Biofilm.	Karacic J, Ruf M, Herzog J, Astasov-Frauenhoffer M, Sahrmann P.	Dent J (Basel)	10.3390/dj12050141	2024
	Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus.	Bullman S, Lucid A, Corcoran D, Sleator RD, Lucey B.	PLoS One	10.1371/journal.pone.0071515	2013
	Colorimetric detection of oral bacteria using functionalized gold nanoparticles as a plasmonic biosensor array.	Wenck C, Leopoldt D, Habib M, Hegermann J, Stiesch M, Doll-Nikutta K, Heisterkamp A, Torres-Mapa ML.	Nanoscale Adv	10.1039/d3na00477e	2024
	Bioinformatics of cyanophycin metabolism genes and characterization of promiscuous isoaspartyl dipeptidases that catalyze the final step of cyanophycin degradation.	Sharon I, Schmeing TM.	Sci Rep	10.1038/s41598-023-34587-w	2023
	Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland.	Koziel M, Lucey B, Bullman S, Corcoran GD, Sleator RD.	Gut Pathog	10.1186/1757-4749-4-14	2012
	Silver Nanoparticles Produced by Laser Ablation and Re-Irradiation Are Effective Preventing Peri-Implantitis Multispecies Biofilm Formation.	Perez-Tanoira R, Fernandez-Arias M, Potel C, Carballo-Fernandez R, Perez-Castro S, Boutinguiza M, Gorgolas M, Lusquinos F, Pou J.	Int J Mol Sci	10.3390/ijms231912027	2022
	Adhesion Forces of Oral Bacteria to Titanium and the Correlation with Biophysical Cellular Characteristics.	Doll-Nikutta K, Winkel A, Yang I, Grote AJ, Meier N, Habib M, Menzel H, Behrens P, Stiesch M.	Bioengineering (Basel)	10.3390/bioengineering9100567	2022
	Zonula occludens toxins and their prophages in Campylobacter species.	Liu F, Lee H, Lan R, Zhang L.	Gut Pathog	10.1186/s13099-016-0125-1	2016
	Campylobacter ureolyticus: a portrait of the pathogen.	O'Donovan D, Corcoran GD, Lucey B, Sleator RD.	Virulence	10.4161/viru.28776	2014
	Tau-Marin Mucoadhesive Gel for Prevention and Treatment of Gum Diseases.	Giannini G, Ragusa I, Nardone GN, Soldi S, Elli M, Valenti P, Rosa L.	Gels	10.3390/gels9080607	2023
	Probiotics-Containing Mucoadhesive Gel for Targeting the Dysbiosis Associated with Periodontal Diseases.	Giannini G, Ragusa I, Nardone GN, Soldi S, Elli M, Valenti P, Rosa L, Marra E, Stoppoloni D, Merlo Pich E.	Int J Dent	10.1155/2022/5007930	2022
Genetics	Pathogenomics of Emerging Campylobacter Species.	Costa D, Iraola G.	Clin Microbiol Rev	10.1128/cmr.00072-18	2019
Metabolism	Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.	Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.	Sci Rep	10.1038/s41598-017-10369-z	2017
Metabolism	An oral multispecies biofilm model for high content screening applications.	Kommerein N, Stumpp SN, Musken M, Ehlert N, Winkel A, Haussler S, Behrens P, Buettner FF, Stiesch M.	PLoS One	10.1371/journal.pone.0173973	2017
	Incidence of Bacteriocins Produced by Food-Related Lactic Acid Bacteria Active towards Oral Pathogens.	Zoumpopoulou G, Pepelassi E, Papaioannou W, Georgalaki M, Maragkoudakis PA, Tarantilis PA, Polissiou M, Tsakalidou E, Papadimitriou K.	Int J Mol Sci	10.3390/ijms14034640	2013
Enzymology	Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae.	Becker AA, Hesta M, Hollants J, Janssens GP, Huys G.	BMC Microbiol	10.1186/1471-2180-14-43	2014
	Influence of environmental and genetic factors linked to celiac disease risk on infant gut colonization by Bacteroides species.	Sanchez E, De Palma G, Capilla A, Nova E, Pozo T, Castillejo G, Varea V, Marcos A, Garrote JA, Polanco I, Lopez A, Ribes-Koninckx C, Garcia-Novo MD, Calvo C, Ortigosa L, Palau F, Sanz Y.	Appl Environ Microbiol	10.1128/aem.00365-11	2011
Enzymology	Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis.	Walter J, Hertel C, Tannock GW, Lis CM, Munro K, Hammes WP.	Appl Environ Microbiol	10.1128/aem.67.6.2578-2585.2001	2001
Enzymology	Rapid urease test (RUT) for evaluation of urease activity in oral bacteria in vitro and in supragingival dental plaque ex vivo.	Dahlen G, Hassan H, Blomqvist S, Carlen A.	BMC Oral Health	10.1186/s12903-018-0541-3	2018
Genetics	Species Delineation and Comparative Genomics within the Campylobacter ureolyticus Complex.	Maki JJ, Howard M, Connelly S, Pettengill MA, Hardy DJ, Cameron A.	J Clin Microbiol	10.1128/jcm.00046-23	2023
Genetics	Identification of Therapeutic Targets in an Emerging Gastrointestinal Pathogen Campylobacter ureolyticus and Possible Intervention through Natural Products.	Khan K, Basharat Z, Jalal K, Mashraqi MM, Alzamami A, Alshamrani S, Uddin R.	Antibiotics (Basel)	10.3390/antibiotics11050680	2022
Genetics	Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.	Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.	Saudi J Biol Sci	10.1016/j.sjbs.2023.103869	2023
Phylogeny	Using 16s rRNA sequencing to characterize the microbiome of tropical cutaneous ulcer disease: insights into the microbial landscape and implications for diagnosis and treatment.	Handley BL, Sokana O, Addo KK, Wagner J, Fookes M, Harding-Esch E, Marks M, Thomson NR, Doyle RM.	Microb Genom	10.1099/mgen.0.001234	2024
	Cardiac Tamponade Caused by Campylobacter ureolyticus Purulent Effusion.	Obregon M, Khan A.	Cureus	10.7759/cureus.56051	2024
	Divergence in the sow vaginal microbiota is associated with fertility.	Fletcher L, Zhan X, Song Y, Li J.	Reproduction	10.1530/rep-25-0044	2025
Pathogenicity	Unraveling the Skin Microbiome in Hidradenitis Suppurativa: Implications for Treatment and Disease Progression.	Cucu CI, Giurcaneanu C, Mihai MM, Andronic T, Ancuta I, Popa MI, Macovei IS, Popa LG.	J Clin Med	10.3390/jcm14072424	2025
Genetics	Insights into the tripartite relationship between cervical cancer, human papillomavirus, and the vaginal microbiome: a mega-analysis.	Rashwan HH, Ali MH, Mostafa MM, Ramadan R, Mysara M.	Hum Genomics	10.1186/s40246-025-00795-w	2025
	Campylobacter fetus subsp. fetus: an unforeseen cause of abortion in regional Australia.	Owusu-Ansa I, Ramadas M, Jacob N, Ayeni FE.	Access Microbiol	10.1099/acmi.0.000889.v5	2025
	Investigating Skin Microbial Community in Malignant Melanoma Lesions.	Properzi M, Dimartino V, Pietrucci D, Fontana C, Rotondo C, Lembo L, Ricci F, Scatozza F, Di Lella G, Messina F, Chillemi G, Bartolini B, Facchiano A.	Microorganisms	10.3390/microorganisms13050992	2025
	VIBES: A consensus subtyping of the vaginal microbiota reveals novel classification criteria.	Fernandez-Edreira D, Linares-Blanco J, V-Del-Rio P, Fernandez-Lozano C.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.11.050	2024
	Follicular Skin Disorders, Inflammatory Bowel Disease, and the Microbiome: A Systematic Review.	Fleshner L, Roster K, Farabi B, Hirani R, Tepper K, Pitchumoni CS, Safai B, Marmon S.	Int J Mol Sci	10.3390/ijms251810203	2024
Pathogenicity	Dysbiosis of Gut Microbiome Is Associated With Rupture of Cerebral Aneurysms.	Kawabata S, Takagaki M, Nakamura H, Oki H, Motooka D, Nakamura S, Nishida T, Terada E, Izutsu N, Takenaka T, Matsui Y, Yamada S, Asai K, Tateishi A, Umehara T, Yano Y, Bamba Y, Matsumoto K, Kishikawa T, Okada Y, Iida T, Kishima H.	Stroke	10.1161/strokeaha.121.034792	2022
	Concentrations of ciprofloxacin in food defined as safe alter the gut microbiome and ciprofloxacin susceptibility in humans: an interventional clinical study.	Manoharan-Basil S, Gestels Z, Abdellati S, Vanbaelen T, Van Den Bossche D, van Alebeek L, Van Herrewege Y, Poppe L, Vandenhove L, Bracke S, Smekens B, Jacobs B, Genbrugge E, Kenyon C.	Sci Rep	10.1038/s41598-025-18714-3	2025
	In-depth Microbiological Characterization of Urine From Subjects With Type 2 Diabetes.	Calvigioni M, Biancalana E, Mazzantini D, Celandroni F, Rossi C, Mengozzi A, Ghelardi E, Solini A.	J Clin Endocrinol Metab	10.1210/clinem/dgae389	2024
	Causal relationship between skin microbiota and Hidradenitis suppurativa: a two-sample Mendelian randomization study.	Guo S, Li P, Lu J, Zhou P, Sun B, Wang J.	Arch Dermatol Res	10.1007/s00403-024-03787-3	2025
Phylogeny	Streptococcus dysgalactiae subsp.-equisimilis as an emerging secondary pathogen in leprosy foot ulcers.	Ebineshan K, Pallapati MS, Srikantam A.	Iran J Microbiol	10.18502/ijm.v16i5.16795	2024
Genetics	Identification of Novel Gene-Specific Markers for Differentiating Various Pathogenic Campylobacter Species Using a Pangenome Analysis Approach.	Kuufire E, Bentum KE, Nyarku R, Osei V, Elrefaey A, James T, Woube Y, Folitse R, Samuel T, Abebe W.	Pathogens	10.3390/pathogens14050477	2025
	Describing the Reproductive Microbiome of Tritrichomonas foetus Chronically Infected Bulls and Diagnostic Collection Device Performance.	Boggan S, Awosile B, Koziol J.	Animals (Basel)	10.3390/ani14182689	2024
	Identification of urinary bacterial genes as biomarkers for non-invasive diagnosis of renal lupus.	Perez-Carrasco V, Soriano-Lerma A, Guzzi C, Garcia-Martin ML, Tello MJ, Linde-Rodriguez A, Sanchez-Martin V, Ortiz-Gonzalez M, PRECISESADS Clinical Consortium, Gutierrez-Fernandez J, Alarcon-Riquelme ME, Soriano M, Maranon C, Garcia-Salcedo JA.	Biomark Res	10.1186/s40364-025-00828-5	2025
Pathogenicity	Dysbiosis of salivary microbiome and cytokines influence oral squamous cell carcinoma through inflammation.	Rai AK, Panda M, Das AK, Rahman T, Das R, Das K, Sarma A, Kataki AC, Chattopadhyay I.	Arch Microbiol	10.1007/s00203-020-02011-w	2021
	The Role of Gut and Oral Microbiota in the Formation and Rupture of Intracranial Aneurysms: A Literature Review.	Joerger AK, Albrecht C, Rothhammer V, Neuhaus K, Wagner A, Meyer B, Wostrack M.	Int J Mol Sci	10.3390/ijms25010048	2023
	Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic Gram-negative organisms (GNOs) in a large integrated Canadian healthcare region.	Church DL, Griener T, Gregson D.	Microbiol Spectr	10.1128/spectrum.02276-24	2024
	Distinct Gut Microbiota Profiles in Unruptured and Ruptured Intracranial Aneurysms: Focus on Butyrate-Producing Bacteria.	Csecsei P, Takacs B, Pasitka L, Varnai R, Peterfi Z, Orban B, Czabajszki M, Olah C, Schwarcz A.	J Clin Med	10.3390/jcm14103488	2025
Pathogenicity	The clinic application of mNGS and ENA-78 assays to identify intra-amniotic infection/inflammation.	Shen D, Ju H, Wang H, Wang X, Li G.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1510671	2025
	The Surface Microbiome of Clinically Unaffected Skinfolds in Hidradenitis Suppurativa: A Cross-Sectional Culture-Based and 16S rRNA Gene Amplicon Sequencing Study in 60 Patients.	Riverain-Gillet E, Guet-Revillet H, Jais JP, Ungeheuer MN, Duchatelet S, Delage M, Lam T, Hovnanian A, Nassif A, Join-Lambert O.	J Invest Dermatol	10.1016/j.jid.2020.02.046	2020
	Integrated analysis of microbiome and metabolome reveals insights into cervical neoplasia aggravation in a Chinese cohort.	Zhai Q, Zhao L, Wang M, Li L, Li LA, Ye M, Li M, Xu C, Meng Y.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1556153	2025
	Optimizing microbiome reference databases with PacBio full-length 16S rRNA sequencing for enhanced taxonomic classification and biomarker discovery.	Han H, Choi YH, Kim SY, Park JH, Chung J, Na HS.	Front Microbiol	10.3389/fmicb.2024.1485073	2024
Enzymology	Rapid Reduction of Campylobacter Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.	Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD, Doan T, Oldenburg CE.	Am J Trop Med Hyg	10.4269/ajtmh.19-0940	2020
Transcriptome	Multi-omics analysis reveals the host-microbe interactions on the dysbiosis of tissue microbiota in male genital lichen sclerosus-induced urethral strictures.	Yu Z, Wang Z, Mao G, Tang J, Zhang R, Song L, Xiu X.	Microbiol Spectr	10.1128/spectrum.00074-25	2025
Enzymology	High Prevalence of Campylobacter ureolyticus in Stool Specimens of Children with Diarrhea in Japan.	Hatanaka N, Shimizu A, Somroop S, Li Y, Asakura M, Nagita A, Prasad Awasthi S, Hinenoya A, Yamasaki S.	Jpn J Infect Dis	10.7883/yoken.jjid.2016.428	2017
	Gut bacteriobiota and mycobiota are both associated with Day-28 mortality among critically ill patients.	Prevel R, Enaud R, Orieux A, Camino A, Berger P, Boyer A, Delhaes L, Gruson D.	Crit Care	10.1186/s13054-022-03980-8	2022
Phylogeny	Cervicovaginal Microbiome and HPV: A Standardized Approach to 16S/ITS NGS and Microbial Community Profiling for Viral Association	Shen-Gunther J, Xia Q, Cai H, Wang Y.	Int J Mol Sci		2025
	Polymicrobial anaerobic bacterial meningitis secondary to dermal sinus: a case report.	Luo L, Wang C, Shen N, Zhao R, Tao Y, Mo X, Cao Q.	Transl Pediatr	10.21037/tp-21-210	2021
	Association of Weather Variables With Pathogens Contributing to Conjunctivitis Worldwide.	Yan D, Prajna NV, Lalitha P, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chaudhary M, Bountogo M, Sie A, Coulibaly B, Amza A, Nassirou B, Almou I, Tran H, Tran Y, Tsui E, Onclinx T, Sella R, Goren L, McClean E, Tham V, Chen C, Ouimette K, Zhong L, Liu Y, Yu D, Abraham T, Lebas E, Arnold BF, McLeod SD, Deiner MS, Porco TC, Seitzman GD, Lietman TM, Shantha J, Hinterwirth A, Doan T.	Clin Infect Dis	10.1093/cid/ciae417	2025
	Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis.	Dos Anjos Borges LG, Pastuschek J, Heimann Y, Dawczynski K, PEONS study group, Schleussner E, Pieper DH, Zollkau J.	BMC Med	10.1186/s12916-023-02805-x	2023
	Causal relationship between gut microbiota and rosacea: a two-sample Mendelian randomization study.	Li J, Yang F, Liu Y, Jiang X.	Front Med (Lausanne)	10.3389/fmed.2024.1322685	2024
Genetics	Heritable Tissue-Specific Gene Expression Associates With Chronic Wound Microbial Species.	Omeir K, Ancira J, Gabrilska R, Tipton C, Miller C, Noe A, Subasinghe K, Rowe M, Phillips N, Wolcott J, Philips CD.	Wound Repair Regen	10.1111/wrr.70055	2025
Pathogenicity	Visceral adiposity in postmenopausal women is associated with a pro-inflammatory gut microbiome and immunogenic metabolic endotoxemia.	Gaber M, Wilson AS, Millen AE, Hovey KM, LaMonte MJ, Wactawski-Wende J, Ochs-Balcom HM, Cook KL.	Microbiome	10.1186/s40168-024-01901-1	2024
	[Associations of Socioeconomic Factors,Nutrients Intake,and Gut Microbiota of Healthy Pregnant Women in the Third Trimester with Gestational Weight Gain].	Ma LK, Xue Y, He TC, Zhang YM.	Zhongguo Yi Xue Ke Xue Yuan Xue Bao	10.3881/j.issn.1000-503x.10505	2018
	Higher abundance of Campylobacter in the oral microbiome of Japanese patients with moyamoya disease.	Takayanagi K, Kanamori F, Ishii K, Yokoyama K, Araki Y, Sumitomo M, Maeda S, Goto S, Ota S, Nagata Y, Nishihori M, Maesawa S, Izumi T, Takasu S, Saito R.	Sci Rep	10.1038/s41598-023-45755-3	2023
Phylogeny	Toward accurate vaginal microbiome profiling: protocol, bioinformatics, and core microbiota characterisation.	Davidson IM, Nikbakht E, Haupt LM, Dunn PJ.	J Assist Reprod Genet	10.1007/s10815-025-03509-2	2025
Phylogeny	Adverse pregnancy outcomes in women with type 1 diabetes are associated with multiple alterations in the vaginal microbiome.	Roth-Schulze AJ, Bandala-Sanchez E, Ngui KM, Naselli G, Oakey H, Ashwood P, Martin G, Brown JD, Zozaya-Valdes E, Thomson RL, Colman PG, Wentworth JM, Vuillermin PJ, Hunyh T, Soldatos G, Couper JJ, Penno MAS, Harrison LC, ENDIA Study Group.	Diabetologia	10.1007/s00125-025-06509-0	2025
	The urinary microbiome distinguishes symptomatic urinary tract infection from asymptomatic older adult patients presenting to the emergency department	Bradley E, Stansky C, Zeamer A, Huang Z, Cincotta L, Lopes A, Potter L, Fontes T, Ward D, Bucci V, McCormick B, Haran J.	Virulence		2025
	Development of a Prevotella bivia PNA probe and a multiplex approach to detect three relevant species in bacterial vaginosis-associated biofilms.	Sousa LGV, Almeida C, Muzny CA, Cerca N.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00411-6	2023
	Bridging gut microbiota composition with extended-spectrum beta-lactamase Enterobacteriales faecal carriage in critically ill patients (microbe cohort study).	Prevel R, Enaud R, Orieux A, Camino A, Sioniac P, M'Zali F, Dubois V, Berger P, Boyer A, Delhaes L, Gruson D.	Ann Intensive Care	10.1186/s13613-023-01121-0	2023
Genetics	Exploring the Link Between Infections and Primary Osteoarthritis: A Next-Generation Metagenomic Sequencing Approach.	Niecwietajewa I, Banasiewicz J, Zaremba-Wroblewski G, Majewska A.	Int J Mol Sci	10.3390/ijms26010020	2024
Proteome	The Human Ocular Surface Microbiome and Its Associations with the Tear Proteome in Dry Eye Disease.	Schlegel I, De Gouyon Matignon de Pontourade CMF, Lincke JB, Keller I, Zinkernagel MS, Zysset-Burri DC.	Int J Mol Sci	10.3390/ijms241814091	2023
	Isolation, characterization, and antimicrobial resistance profiles of Campylobacter jejuni and Campylobacter coli from raw meat of large livestock in Shahrekord, Iran.	Rahimi E, Mousavinafchi SB, Shakerian A.	Arch Razi Inst	10.32592/ari.2024.79.1.41	2024
	Prevalence, Diversity, and Virulence of Campylobacter Carried by Migratory Birds at Four Major Habitats in China.	Wu S, Jia R, Wang Y, Li J, Li Y, Wang L, Wang Y, Liu C, Jia EM, Wang Y, Zhang G, Liu J.	Pathogens	10.3390/pathogens13030230	2024
Pathogenicity	Identification of Lung and Blood Microbiota Implicated in COVID-19 Prognosis.	Dereschuk K, Apostol L, Ranjan I, Chakladar J, Li WT, Rajasekaran M, Chang EY, Ongkeko WM.	Cells	10.3390/cells10061452	2021
Pathogenicity	Exposure to bacterial and fungal bioaerosols in facilities processing biodegradable waste.	Kontro MH, Kirsi M, Laitinen SK.	Front Public Health	10.3389/fpubh.2022.789861	2022
	Gut microbiome in intracranial aneurysm growth, subarachnoid hemorrhage, and cerebral vasospasm: a systematic review with a narrative synthesis.	Klepinowski T, Skonieczna-Zydecka K, Pala B, Stachowska E, Sagan L.	Front Neurosci	10.3389/fnins.2023.1247151	2023
	Genetic Causal Association Between the Gut Microbiome and Intracranial Aneurysm and Subarachnoid Hemorrhage: A Two-Sample Mendelian Randomization Study.	He M, Wang W, He Q, Dai H, Han J, Cui W.	Neurol Ther	10.1007/s40120-023-00525-1	2023
	Geospatial Analysis of Multilevel Socioenvironmental Factors Impacting the Campylobacter Burden among Infants in Rural Eastern Ethiopia: A One Health Perspective.	Li X, Chen D, Liang S, Hassen JY, McKune SL, Havelaar AH, Blackburn JK.	Am J Trop Med Hyg	10.4269/ajtmh.24-0401	2025
	Complete Genome Sequence of the Campylobacter ureolyticus Clinical Isolate RIGS 9880.	Miller WG, Yee E, On SL, Andersen LP, Bono JL.	Genome Announc	10.1128/genomea.01291-15	2015
Cultivation	Development of nalidixic acid amphotericin B vancomycin (NAV) medium for the isolation of Campylobacter ureolyticus from the stools of patients presenting with acute gastroenteritis.	O'Doherty A, Koziel M, De Barra L, Corcoran D, Bullman S, Lucey B, Sleator RD.	Br J Biomed Sci	10.1080/09674845.2014.11669956	2014
Phylogeny	Urinary Microbiome of Reproductive-Age Asymptomatic European Women.	Ugarcina Perovic S, Ksiezarek M, Rocha J, Cappelli EA, Sousa M, Ribeiro TG, Grosso F, Peixe L.	Microbiol Spectr	10.1128/spectrum.01308-22	2022
Phylogeny	Differential Urinary Microbiome and Its Metabolic Footprint in Bladder Cancer Patients Following BCG Treatment.	Min K, Zheng CM, Kim S, Kim H, Lee M, Piao XM, Byun YJ, Kim Y, Joo Y, Cho B, Moon S, Kim WT, Kang HW, Park H, Yun SJ.	Int J Mol Sci	10.3390/ijms252011157	2024
Genetics	Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses.	Wu R, Payne M, Zhang L, Lan R.	mSystems	10.1128/msystems.01218-23	2024
	Two-sample Mendelian randomization to study the causal association between gut microbiota and atherosclerosis.	Jiang S, Yu C, Lv B, He S, Zheng Y, Yang W, Wang B, Li D, Lin J.	Front Immunol	10.3389/fimmu.2023.1282072	2023
	Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.	Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B.	Genome Announc	10.1128/genomea.00262-14	2014
	Characterization and Analysis of the Skin Microbiota in Rosacea: A Case-Control Study.	Rainer BM, Thompson KG, Antonescu C, Florea L, Mongodin EF, Bui J, Fischer AH, Pasieka HB, Garza LA, Kang S, Chien AL.	Am J Clin Dermatol	10.1007/s40257-019-00471-5	2020
	Legendary fermented herbs: an ethnobotanical study of the traditional fermentation starter of the Chuanqing people in Northwestern Guizhou, China.	Zhao J, Wang Q, Ren Z, Yang C, Guan S, Wang X, Huang Y, Yao R, Yin H.	J Ethnobiol Ethnomed	10.1186/s13002-024-00708-6	2024
Metabolism	Will gut, oral, and vaginal microbiota influence the outcome of FET or be influenced by FET? A pilot study.	Zhang Z, Zhang Y, Wu A, Xu C, Li Z.	mBio	10.1128/mbio.00509-25	2025
	Investigating the Significance of Non-jejuni/coli Campylobacter Strains in Patients with Diarrhea.	Teksoy N, Ilktac M, Ilktac M, Ongen B.	Healthcare (Basel)	10.3390/healthcare11182562	2023
	Presence of Helicobacter pylori and Campylobacter ureolyticus in the oral cavity of a Northern Thailand population that experiences stomach pain.	Basic A, Enerback H, Waldenstrom S, Ostgard E, Suksuart N, Dahlen G.	J Oral Microbiol	10.1080/20002297.2018.1527655	2018
	Association between microbial composition, diversity, and function of the maternal gastrointestinal microbiome with impaired glucose tolerance on the glucose challenge test.	Dreisbach C, Prescott S, Alhusen J, Dudley D, Trinchieri G, Siega-Riz AM.	PLoS One	10.1371/journal.pone.0271261	2022
Genetics	Genomic Diversity of Campylobacter lari Group Isolates from Europe and Australia in a One Health Context.	Gourmelon M, Boukerb AM, Nabi N, Banerji S, Joensen KG, Serghine J, Cormier A, Megraud F, Lehours P, Alter T, Ingle DJ, Kirk MD, Nielsen EM.	Appl Environ Microbiol	10.1128/aem.01368-22	2022
	A New PNA-FISH Probe Targeting Fannyhessea vaginae.	Sousa LGV, Castro J, Franca A, Almeida C, Muzny CA, Cerca N.	Front Cell Infect Microbiol	10.3389/fcimb.2021.779376	2021
Phylogeny	Assessment of the prevalence and diversity of emergent campylobacteria in human stool samples using a combination of traditional and molecular methods.	Collado L, Gutierrez M, Gonzalez M, Fernandez H.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2012.12.006	2013
Phylogeny	Campylobacter ureolyticus: an emerging gastrointestinal pathogen?	Bullman S, Corcoran D, O'Leary J, Lucey B, Byrne D, Sleator RD.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2010.00760.x	2011
	Young-onset Rectal Cancer: Unique Tumoral Microbiome and Correlation With Response to Neoadjuvant Therapy.	White MG, Damania A, Alshenaifi J, Sahasrabhojane P, Peacock O, Losh J, Wong MC, Lutter-Berkova Z, Chang GJ, Futreal A, Wargo JA, Ajami NJ, Kopetz S, You YN.	Ann Surg	10.1097/sla.0000000000006015	2023
	Rosacea, microbiome and probiotics: the gut-skin axis.	Sanchez-Pellicer P, Eguren-Michelena C, Garcia-Gavin J, Llamas-Velasco M, Navarro-Moratalla L, Nunez-Delegido E, Aguera-Santos J, Navarro-Lopez V.	Front Microbiol	10.3389/fmicb.2023.1323644	2023
Phylogeny	Genital Anaerobic Bacterial Overgrowth and the PrePex Male Circumcision Device, Rakai, Uganda.	Liu CM, Prodger JL, Tobian AA, Serwadda D, Galiwango RM, Nalugoda F, Kighoma N, Mwinike J, Anyokorit M, Price LB, Wawer MJ, Kigozi G, Gray RH.	J Infect Dis	10.1093/infdis/jiw182	2016
	Metabarcoding analysis of the microbiota in flocks naturally infected by Coxiella burnetii: First description of the global microbiota in domestic small ruminants.	Toledo-Perona R, Gomez-Martin A, Contreras A, Toquet M, Quereda JJ, Esnal A, Gonzalez-Torres P, Gomis J.	One Health	10.1016/j.onehlt.2025.100996	2025
Genetics	Anti-Vibrio parahaemolyticus compounds from Streptomyces parvus based on Pan-genome and subtractive proteomics.	Liu W, Ou P, Tian F, Liao J, Ma Y, Wang J, Jin X.	Front Microbiol	10.3389/fmicb.2023.1218176	2023
	A signature of Prevotella copri and Faecalibacterium prausnitzii depletion, and a link with bacterial glutamate degradation in the Kenyan colorectal cancer patients.	Obuya S, Elkholy A, Avuthu N, Behring M, Bajpai P, Agarwal S, Kim HG, El-Nikhely N, Akinyi P, Orwa J, Afaq F, Abdalla M, Michael A, Farouk M, Bateman LB, Fouad M, Saleh M, Guda C, Manne U, Arafat W.	J Gastrointest Oncol	10.21037/jgo-22-116	2022
Phylogeny	Emerging dynamics of human campylobacteriosis in Southern Ireland.	Bullman S, Corcoran D, O'Leary J, O'Hare D, Lucey B, Sleator RD.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2011.00847.x	2011
	Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.	Koziel M, Corcoran GD, Sleator RD, Lucey B.	Gut Pathog	10.1186/1757-4749-6-9	2014
	Newly identified pathogens in periodontitis: evidence from an association and an elimination study.	Veras EL, Castro Dos Santos N, Souza JGS, Figueiredo LC, Retamal-Valdes B, Barao VAR, Shibli J, Bertolini M, Faveri M, Teles F, Duarte P, Feres M.	J Oral Microbiol	10.1080/20002297.2023.2213111	2023
	Immunoreactive proteins of Campylobacter concisus, an emergent intestinal pathogen.	Kovach Z, Kaakoush NO, Lamb S, Zhang L, Raftery MJ, Mitchell H.	FEMS Immunol Med Microbiol	10.1111/j.1574-695x.2011.00864.x	2011
	Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea-A Systematic Review of the Literature.	Tutka K, Zychowska M, Reich A.	Microorganisms	10.3390/microorganisms8111756	2020
Phylogeny	How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?-A Study by 16S-RNA Sequencing.	Al-Ahmad A, Wollensak K, Rau S, Guevara Solarte DL, Paschke S, Lienkamp K, Staszewski O.	Microorganisms	10.3390/microorganisms9071427	2021
	Genital Microbiota of Women From Six Ethnic Groups With and Without Human Papillomavirus Infection in Shangri-La, China.	Liu CJ, Xiao WY, Fang JF, Dong YH, Ye KF, He MP, Wang YS, Li X, Zhao ZM, Yuan T, Zhao T, He CY, Zhang SM, Yang E, Wu XM, Li XR.	Front Cell Infect Microbiol	10.3389/fcimb.2022.935068	2022
	A Healthy Vaginal Microbiota Remains Stable during Oral Probiotic Supplementation: A Randomised Controlled Trial.	Lyra A, Ala-Jaakkola R, Yeung N, Datta N, Evans K, Hibberd A, Lehtinen MJ, Forssten SD, Ibarra A, Pesonen T, Junnila J, Ouwehand AC, Baranowski K, Maukonen J, Crawford G, Lehtoranta L.	Microorganisms	10.3390/microorganisms11020499	2023
	Effects of wearing personal protective equipment during COVID-19 pandemic on composition and diversity of skin bacteria and fungi of medical workers.	Lin X, Li YZ, Chen T, Min SH, Wang DF, Ding MM, Jiang G.	J Eur Acad Dermatol Venereol	10.1111/jdv.18216	2022
	Taxonomic and functional profiling of fecal metagenomes for the early detection of colorectal cancer.	Wu X, Tang Z, Zhao R, Wang Y, Wang X, Liu S, Zou H.	Front Oncol	10.3389/fonc.2023.1218056	2023
	Anaerobes in diabetic foot infections: pathophysiology, epidemiology, virulence, and management.	Villa F, Marchandin H, Lavigne J-P, Schuldiner S, Cellier N, Sotto A, Loubet P.	Clin Microbiol Rev	10.1128/cmr.00143-23	2024
Phylogeny	SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines.	Gihawi A, Rallapalli G, Hurst R, Cooper CS, Leggett RM, Brewer DS.	Genome Biol	10.1186/s13059-019-1819-8	2019
	Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review.	Luchen CC, Chibuye M, Spijker R, Simuyandi M, Chisenga C, Bosomprah S, Chilengi R, Schultsz C, Mende DR, Harris VC.	PLoS Med	10.1371/journal.pmed.1004235	2023
	Alterations of the vaginal microbiome in healthy pregnant women positive for group B Streptococcus colonization during the third trimester.	Shabayek S, Abdellah AM, Salah M, Ramadan M, Fahmy N.	BMC Microbiol	10.1186/s12866-022-02730-8	2022
	Helicobacter pylori in oral cavity: current knowledge.	Costa LCMC, Carvalho MDG, Vale FF, Marques AT, Rasmussen LT, Chen T, Barros-Pinheiro M.	Clin Exp Med	10.1007/s10238-024-01474-1	2024
	Colonic mucosal microbiota is associated with bowel habit subtype and abdominal pain in patients with irritable bowel syndrome.	Choo C, Mahurkar-Joshi S, Dong TS, Lenhart A, Lagishetty V, Jacobs JP, Labus JS, Jaffe N, Mayer EA, Chang L.	Am J Physiol Gastrointest Liver Physiol	10.1152/ajpgi.00352.2021	2022
	Urogenital tract and rectal microbiota composition and its influence on reproductive outcomes in infertile patients.	Dong YH, Fu Z, Zhang NN, Shao JY, Shen J, Yang E, Sun SY, Zhao ZM, Xiao A, Liu CJ, Li XR.	Front Microbiol	10.3389/fmicb.2023.1051437	2023
	The microbiota of pregnant women with SARS-CoV-2 and their infants.	Leftwich HK, Vargas-Robles D, Rojas-Correa M, Yap YR, Bhattarai S, Ward DV, Fujimori G, Forconi CS, Yeboah T, Carter A, Kastrinakis A, Asirwatham AM, Bucci V, Moormann AM, Maldonado-Contreras A.	Microbiome	10.1186/s40168-023-01577-z	2023
	Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.	Armstrong G, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck KL, Hakim D, Havulinna AS, Meric G, Niiranen T, Lahti L, Salomaa V, Jain M, Inouye M, Swafford AD, Kim HC, Parida L, Vazquez-Baeza Y, Knight R.	Genome Res	10.1101/gr.275777.121	2021
	Limb salvage and reconstruction following a zebra attack.	Carlson JT, Yuen JC, Smeds MR.	Trauma Case Rep	10.1016/j.tcr.2017.01.009	2017
Phylogeny	Cervicovaginal-Microbiome Analysis by 16S Sequencing and Real-Time PCR in Patients from Novosibirsk (Russia) with Cervical Lesions and Several Years after Cancer Treatment.	Ivanov MK, Brenner EV, Hodkevich AA, Dzyubenko VV, Krasilnikov SE, Mansurova AS, Vakhturova IE, Agletdinov EF, Shumeikina AO, Chernyshova AL, Titov SE.	Diagnostics (Basel)	10.3390/diagnostics13010140	2023
	Microbiota in Rosacea.	Kim HS.	Am J Clin Dermatol	10.1007/s40257-020-00546-8	2020
Enzymology	Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis.	Mukhopadhya I, Thomson JM, Hansen R, Berry SH, El-Omar EM, Hold GL.	PLoS One	10.1371/journal.pone.0021490	2011
Phylogeny	The direct and indirect association of cervical microbiota with the risk of cervical intraepithelial neoplasia.	Zhang C, Liu Y, Gao W, Pan Y, Gao Y, Shen J, Xiong H.	Cancer Med	10.1002/cam4.1471	2018
	Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways.	Lacunza E, Fink V, Salas ME, Canzoneri R, Naipauer J, Williams S, Coso O, Sued O, Cahn P, Mesri EA, Abba MC.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00413-4	2023
	Clinical Characteristics, Risk Factors, and Population Attributable Fraction for Campylobacteriosis in a Nicaraguan Birth Cohort.	St Jean DT, Herrera R, Perez C, Gutierrez L, Vielot NA, Gonzalez F, Reyes Y, Toval-Ruiz C, Blandon P, Kharabora O, Bowman NM, Bucardo F, Becker-Dreps S, Vilchez S.	Am J Trop Med Hyg	10.4269/ajtmh.20-1317	2021
Genetics	Successful Fecal Microbiota Transplantation in a Patient Suffering From Irritable Bowel Syndrome and Recurrent Urinary Tract Infections.	Hocquart M, Pham T, Kuete E, Tomei E, Lagier JC, Raoult D.	Open Forum Infect Dis	10.1093/ofid/ofz398	2019
	Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response.	Asangba AE, Chen J, Goergen KM, Larson MC, Oberg AL, Casarin J, Multinu F, Kaufmann SH, Mariani A, Chia N, Walther-Antonio MRS.	Sci Rep	10.1038/s41598-023-27555-x	2023
	Pathogenic potential of Campylobacter ureolyticus.	Burgos-Portugal JA, Kaakoush NO, Raftery MJ, Mitchell HM.	Infect Immun	10.1128/iai.06031-11	2012
Pathogenicity	A systematic review and meta-analysis reveal that Campylobacter spp. and antibiotic resistance are widespread in humans in sub-Saharan Africa.	Hlashwayo DF, Sigauque B, Noormahomed EV, Afonso SMS, Mandomando IM, Bila CG.	PLoS One	10.1371/journal.pone.0245951	2021
	Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization.	Wang Y, Tao XF, Su ZX, Liu AK, Liu TL, Sun L, Yao Q, Chen KP, Gu X.	Evol Bioinform Online	10.4137/ebo.s40703	2016
Pathogenicity	Persistent, Asymptomatic Colonization with Candida is Associated with Elevated Frequencies of Highly Activated Cervical Th17-Like Cells and Related Cytokines in the Reproductive Tract of South African Adolescents.	Happel AU, Gasper M, Balle C, Konstantinus I, Gamieldien H, Dabee S, Gill K, Bekker LG, Passmore JS, Jaspan HB.	Microbiol Spectr	10.1128/spectrum.01626-21	2022
	Acquisition, Divergence, and Personalization of the Female Perineal Microbiomes Are Driven by Developmental Milestones and Disrupted by Urinary Tract Infection: A Pilot Study.	Lucas EJ, Ching CB, Saraswat S, Dabdoub SM, Kumar PP, Justice SS.	Front Pediatr	10.3389/fped.2020.542413	2020
	Opisthorchis viverrini, Clonorchis sinensis and Opisthorchis felineus liver flukes affect mammalian host microbiome in a species-specific manner.	Pakharukova MY, Lishai EA, Zaparina O, Baginskaya NV, Hong SJ, Sripa B, Mordvinov VA.	PLoS Negl Trop Dis	10.1371/journal.pntd.0011111	2023
Genetics	The microaerophilic microbiota of de-novo paediatric inflammatory bowel disease: the BISCUIT study.	Hansen R, Berry SH, Mukhopadhya I, Thomson JM, Saunders KA, Nicholl CE, Bisset WM, Loganathan S, Mahdi G, Kastner-Cole D, Barclay AR, Bishop J, Flynn DM, McGrogan P, Russell RK, El-Omar EM, Hold GL.	PLoS One	10.1371/journal.pone.0058825	2013
Phylogeny	Indonesian children fecal microbiome from birth until weaning was different from microbiomes of their mothers.	Khine WWT, Rahayu ES, See TY, Kuah S, Salminen S, Nakayama J, Lee YK.	Gut Microbes	10.1080/19490976.2020.1761240	2020
	MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations.	Perz AI, Giles CB, Brown CA, Porter H, Roopnarinesingh X, Wren JD.	BMC Bioinformatics	10.1186/s12859-019-2623-x	2019
Enzymology	Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.	Friis-Nielsen J, Kjartansdottir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Ponten T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S.	Viruses	10.3390/v8020053	2016
	Composition of fecal microbiota in low-set rectal cancer patients treated with FOLFOX.	Li J, Li J, Lyu N, Ma Y, Liu F, Feng Y, Yao L, Hou Z, Song X, Zhao H, Li X, Wang Y, Xiao C, Zhu B.	Ther Adv Chronic Dis	10.1177/2040622320904293	2020
	The neovaginal microbiome of transgender women post-gender reassignment surgery.	Birse KD, Kratzer K, Zuend CF, Mutch S, Noel-Romas L, Lamont A, Abou M, Jalil E, Veloso V, Grinsztejn B, Friedman RK, Broliden K, Bradley F, Poliquin V, Li F, Yanavich C, Burgener A, Aldrovandi G.	Microbiome	10.1186/s40168-020-00804-1	2020
Phylogeny	Microbiota of deciduous endodontic infections analysed by MDA and Checkerboard DNA-DNA hybridization.	Tavares WL, Neves de Brito LC, Teles RP, Massara ML, Ribeiro Sobrinho AP, Haffajee AD, Socransky SS, Teles FR.	Int Endod J	10.1111/j.1365-2591.2010.01805.x	2011
	Diversity of macaque microbiota compared to the human counterparts.	Chen Z, Yeoh YK, Hui M, Wong PY, Chan MCW, Ip M, Yu J, Burk RD, Chan FKL, Chan PKS.	Sci Rep	10.1038/s41598-018-33950-6	2018
Genetics	Antimicrobial Resistance Gene Prevalence in a Population of Patients with Advanced Dementia Is Related to Specific Pathobionts.	Rowan-Nash AD, Araos R, D'Agata EMC, Belenky P.	iScience	10.1016/j.isci.2020.100905	2020
	Inquiring into the Gaps of Campylobacter Surveillance Methods.	Magana M, Chatzipanagiotou S, Burriel AR, Ioannidis A.	Vet Sci	10.3390/vetsci4030036	2017
Phylogeny	Evaluation of the Vitek 2 ANC card for identification of clinical isolates of anaerobic bacteria.	Lee EH, Degener JE, Welling GW, Veloo AC.	J Clin Microbiol	10.1128/jcm.02166-10	2011
	PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter.	Aidley J, Wanford JJ, Green LR, Sheppard SK, Bayliss CD.	Microb Genom	10.1099/mgen.0.000228	2018
Enzymology	Detection of Campylobacter species and Arcobacter butzleri in stool samples by use of real-time multiplex PCR.	de Boer RF, Ott A, Guren P, van Zanten E, van Belkum A, Kooistra-Smid AM.	J Clin Microbiol	10.1128/jcm.01716-12	2013
Enzymology	Prevalence of Campylobacter species in adult Crohn's disease and the preferential colonization sites of Campylobacter species in the human intestine.	Mahendran V, Riordan SM, Grimm MC, Tran TA, Major J, Kaakoush NO, Mitchell H, Zhang L.	PLoS One	10.1371/journal.pone.0025417	2011
	Pathogens transmitted in animal feces in low- and middle-income countries.	Delahoy MJ, Wodnik B, McAliley L, Penakalapati G, Swarthout J, Freeman MC, Levy K.	Int J Hyg Environ Health	10.1016/j.ijheh.2018.03.005	2018
	Deep sequencing analysis reveals temporal microbiota changes associated with development of bovine digital dermatitis.	Krull AC, Shearer JK, Gorden PJ, Cooper VL, Phillips GJ, Plummer PJ.	Infect Immun	10.1128/iai.02077-14	2014
Genetics	Social networks predict gut microbiome composition in wild baboons.	Tung J, Barreiro LB, Burns MB, Grenier JC, Lynch J, Grieneisen LE, Altmann J, Alberts SC, Blekhman R, Archie EA.	Elife	10.7554/elife.05224	2015
	Global Epidemiology of Campylobacter Infection.	Kaakoush NO, Castano-Rodriguez N, Mitchell HM, Man SM.	Clin Microbiol Rev	10.1128/cmr.00006-15	2015
Phylogeny	Reclassification of Bacteroides ureolyticus as Campylobacter ureolyticus comb. nov., and emended description of the genus Campylobacter.	Vandamme P, Debruyne L, De Brandt E, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.017152-0	2009
Enzymology	Numerical analysis of electrophoretic protein patterns of Bacteroides ureolyticus clinical isolates.	Taylor AJ, Costas M, Owen RJ	J Clin Microbiol	10.1128/jcm.25.4.660-666.1987	1987
Phylogeny	Comparison of strains of gram-negative, anaerobic, agar-corroding rods isolated from soft tissue infections in cats and dogs with type strains of Bacteroides gracilis, Wolinella recta, Wolinella succinogenes, and Campylobacter concisus.	Love DN, Jones RF, Bailey M, Calverley A	J Clin Microbiol	10.1128/jcm.20.4.747-750.1984	1984
Phylogeny	Campylobacter sputorum subsp. bovis subsp. nov., isolated from cattle, and an emended description of Campylobacter sputorum.	Miller WG, Williams TG, Wood DF, Chapman MH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006571	2024
Phylogeny	Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).	Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-Garcia A, Rossen JW, Duim B, Wagenaar JA.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002742	2018
Phylogeny	Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).	Koziel M, O'Doherty P, Vandamme P, Corcoran GD, Sleator RD, Lucey B.	Int J Syst Evol Microbiol	10.1099/ijs.0.063867-0	2014

References

#8781	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20703
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#44971	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7319
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68367	Automatically annotated from API 20A .
#68373	Automatically annotated from API CAM .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter ureolyticus (DSM 20703, ATCC 33387, CCUG 7319)

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