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    title   = {Cervicovaginal Microbiome and HPV: A Standardized Approach to 16S/ITS NGS and Microbial Community Profiling for Viral Association},    
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    title   = {Reclassification of Bacteroides ureolyticus as Campylobacter ureolyticus comb. nov., and emended description of the genus Campylobacter.},    
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    title   = {Microbiota of deciduous endodontic infections analysed by MDA and Checkerboard DNA-DNA hybridization.},    
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    title   = {Campylobacter ureolyticus: an emerging gastrointestinal pathogen?},    
    author  = {Bullman S, Corcoran D, O'Leary J, Lucey B, Byrne D, Sleator RD.},    
    journal = {FEMS Immunol Med Microbiol},    
    year    = {2011},    
    doi     = {10.1111/j.1574-695x.2010.00760.x},    
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    title   = {Evaluation of the Vitek 2 ANC card for identification of clinical isolates of anaerobic bacteria.},    
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    journal = {J Clin Microbiol},    
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    title   = {Influence of environmental and genetic factors linked to celiac disease risk on infant gut colonization by Bacteroides species.},    
    author  = {Sanchez E, De Palma G, Capilla A, Nova E, Pozo T, Castillejo G, Varea V, Marcos A, Garrote JA, Polanco I, Lopez A, Ribes-Koninckx C, Garcia-Novo MD, Calvo C, Ortigosa L, Palau F, Sanz Y.},    
    journal = {Appl Environ Microbiol},    
    year    = {2011},    
    doi     = {10.1128/aem.00365-11},    
    pmid    = {21642397}        
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    title   = {Detection of Campylobacter concisus and other Campylobacter species in colonic biopsies from adults with ulcerative colitis.},    
    author  = {Mukhopadhya I, Thomson JM, Hansen R, Berry SH, El-Omar EM, Hold GL.},    
    journal = {PLoS One},    
    year    = {2011},    
    doi     = {10.1371/journal.pone.0021490},    
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    title   = {Prevalence of Campylobacter species in adult Crohn's disease and the preferential colonization sites of Campylobacter species in the human intestine.},    
    author  = {Mahendran V, Riordan SM, Grimm MC, Tran TA, Major J, Kaakoush NO, Mitchell H, Zhang L.},    
    journal = {PLoS One},    
    year    = {2011},    
    doi     = {10.1371/journal.pone.0025417},    
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    title   = {Emerging dynamics of human campylobacteriosis in Southern Ireland.},    
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    journal = {FEMS Immunol Med Microbiol},    
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    doi     = {10.1111/j.1574-695x.2011.00847.x},    
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    title   = {Immunoreactive proteins of Campylobacter concisus, an emergent intestinal pathogen.},    
    author  = {Kovach Z, Kaakoush NO, Lamb S, Zhang L, Raftery MJ, Mitchell H.},    
    journal = {FEMS Immunol Med Microbiol},    
    year    = {2011},    
    doi     = {10.1111/j.1574-695x.2011.00864.x},    
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    @article{lin93263,
    title   = {Pathogenic potential of Campylobacter ureolyticus.},    
    author  = {Burgos-Portugal JA, Kaakoush NO, Raftery MJ, Mitchell HM.},    
    journal = {Infect Immun},    
    year    = {2012},    
    doi     = {10.1128/iai.06031-11},    
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    @article{lin93139,
    title   = {Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland.},    
    author  = {Koziel M, Lucey B, Bullman S, Corcoran GD, Sleator RD.},    
    journal = {Gut Pathog},    
    year    = {2012},    
    doi     = {10.1186/1757-4749-4-14},    
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    @article{lin93281,
    title   = {Detection of Campylobacter species and Arcobacter butzleri in stool samples by use of real-time multiplex PCR.},    
    author  = {de Boer RF, Ott A, Guren P, van Zanten E, van Belkum A, Kooistra-Smid AM.},    
    journal = {J Clin Microbiol},    
    year    = {2013},    
    doi     = {10.1128/jcm.01716-12},    
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    title   = {Assessment of the prevalence and diversity of emergent campylobacteria in human stool samples using a combination of traditional and molecular methods.},    
    author  = {Collado L, Gutierrez M, Gonzalez M, Fernandez H.},    
    journal = {Diagn Microbiol Infect Dis},    
    year    = {2013},    
    doi     = {10.1016/j.diagmicrobio.2012.12.006},    
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    title   = {Incidence of Bacteriocins Produced by Food-Related Lactic Acid Bacteria Active towards Oral Pathogens.},    
    author  = {Zoumpopoulou G, Pepelassi E, Papaioannou W, Georgalaki M, Maragkoudakis PA, Tarantilis PA, Polissiou M, Tsakalidou E, Papadimitriou K.},    
    journal = {Int J Mol Sci},    
    year    = {2013},    
    doi     = {10.3390/ijms14034640},    
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    @article{lin93269,
    title   = {The microaerophilic microbiota of de-novo paediatric inflammatory bowel disease: the BISCUIT study.},    
    author  = {Hansen R, Berry SH, Mukhopadhya I, Thomson JM, Saunders KA, Nicholl CE, Bisset WM, Loganathan S, Mahdi G, Kastner-Cole D, Barclay AR, Bishop J, Flynn DM, McGrogan P, Russell RK, El-Omar EM, Hold GL.},    
    journal = {PLoS One},    
    year    = {2013},    
    doi     = {10.1371/journal.pone.0058825},    
    pmid    = {23554935}        
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    @article{lin93136,
    title   = {Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus.},    
    author  = {Bullman S, Lucid A, Corcoran D, Sleator RD, Lucey B.},    
    journal = {PLoS One},    
    year    = {2013},    
    doi     = {10.1371/journal.pone.0071515},    
    pmid    = {24023611}        
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    @article{lin93150,
    title   = {Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae.},    
    author  = {Becker AA, Hesta M, Hollants J, Janssens GP, Huys G.},    
    journal = {BMC Microbiol},    
    year    = {2014},    
    doi     = {10.1186/1471-2180-14-43},    
    pmid    = {24548488}        
    }
    @article{lin93212,
    title   = {Development of nalidixic acid amphotericin B vancomycin (NAV) medium for the isolation of Campylobacter ureolyticus from the stools of patients presenting with acute gastroenteritis.},    
    author  = {O'Doherty A, Koziel M, De Barra L, Corcoran D, Bullman S, Lucey B, Sleator RD.},    
    journal = {Br J Biomed Sci},    
    year    = {2014},    
    doi     = {10.1080/09674845.2014.11669956},    
    pmid    = {24693569}        
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    @article{lin93143,
    title   = {Campylobacter ureolyticus: a portrait of the pathogen.},    
    author  = {O'Donovan D, Corcoran GD, Lucey B, Sleator RD.},    
    journal = {Virulence},    
    year    = {2014},    
    doi     = {10.4161/viru.28776},    
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    }
    @article{lin93218,
    title   = {Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.},    
    author  = {Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B.},    
    journal = {Genome Announc},    
    year    = {2014},    
    doi     = {10.1128/genomea.00262-14},    
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    @article{lin93236,
    title   = {Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.},    
    author  = {Koziel M, Corcoran GD, Sleator RD, Lucey B.},    
    journal = {Gut Pathog},    
    year    = {2014},    
    doi     = {10.1186/1757-4749-6-9},    
    pmid    = {24739468}        
    }
    @article{lin93284,
    title   = {Deep sequencing analysis reveals temporal microbiota changes associated with development of bovine digital dermatitis.},    
    author  = {Krull AC, Shearer JK, Gorden PJ, Cooper VL, Phillips GJ, Plummer PJ.},    
    journal = {Infect Immun},    
    year    = {2014},    
    doi     = {10.1128/iai.02077-14},    
    pmid    = {24866801}        
    }
    @article{lin93215,
    title   = {Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).},    
    author  = {Koziel M, O'Doherty P, Vandamme P, Corcoran GD, Sleator RD, Lucey B.},    
    journal = {Int J Syst Evol Microbiol},    
    year    = {2014},    
    doi     = {10.1099/ijs.0.063867-0},    
    pmid    = {24876239}        
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    @article{lin93285,
    title   = {Social networks predict gut microbiome composition in wild baboons.},    
    author  = {Tung J, Barreiro LB, Burns MB, Grenier JC, Lynch J, Grieneisen LE, Altmann J, Alberts SC, Blekhman R, Archie EA.},    
    journal = {Elife},    
    year    = {2015},    
    doi     = {10.7554/elife.05224},    
    pmid    = {25774601}        
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    @article{lin93286,
    title   = {Global Epidemiology of Campylobacter Infection.},    
    author  = {Kaakoush NO, Castano-Rodriguez N, Mitchell HM, Man SM.},    
    journal = {Clin Microbiol Rev},    
    year    = {2015},    
    doi     = {10.1128/cmr.00006-15},    
    pmid    = {26062576}        
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    @article{lin93211,
    title   = {Complete Genome Sequence of the Campylobacter ureolyticus Clinical Isolate RIGS 9880.},    
    author  = {Miller WG, Yee E, On SL, Andersen LP, Bono JL.},    
    journal = {Genome Announc},    
    year    = {2015},    
    doi     = {10.1128/genomea.01291-15},    
    pmid    = {26543122}        
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    @article{lin93272,
    title   = {Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers.},    
    author  = {Friis-Nielsen J, Kjartansdottir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Ponten T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S.},    
    journal = {Viruses},    
    year    = {2016},    
    doi     = {10.3390/v8020053},    
    pmid    = {26907326}        
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    @article{lin93231,
    title   = {Genital Anaerobic Bacterial Overgrowth and the PrePex Male Circumcision Device, Rakai, Uganda.},    
    author  = {Liu CM, Prodger JL, Tobian AA, Serwadda D, Galiwango RM, Nalugoda F, Kighoma N, Mwinike J, Anyokorit M, Price LB, Wawer MJ, Kigozi G, Gray RH.},    
    journal = {J Infect Dis},    
    year    = {2016},    
    doi     = {10.1093/infdis/jiw182},    
    pmid    = {27190185}        
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    @article{lin93142,
    title   = {Zonula occludens toxins and their prophages in Campylobacter species.},    
    author  = {Liu F, Lee H, Lan R, Zhang L.},    
    journal = {Gut Pathog},    
    year    = {2016},    
    doi     = {10.1186/s13099-016-0125-1},    
    pmid    = {27651834}        
    }
    @article{lin93265,
    title   = {Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization.},    
    author  = {Wang Y, Tao XF, Su ZX, Liu AK, Liu TL, Sun L, Yao Q, Chen KP, Gu X.},    
    journal = {Evol Bioinform Online},    
    year    = {2016},    
    doi     = {10.4137/ebo.s40703},    
    pmid    = {27980385}        
    }
    @article{lin93185,
    title   = {High Prevalence of Campylobacter ureolyticus in Stool Specimens of Children with Diarrhea in Japan.},    
    author  = {Hatanaka N, Shimizu A, Somroop S, Li Y, Asakura M, Nagita A, Prasad Awasthi S, Hinenoya A, Yamasaki S.},    
    journal = {Jpn J Infect Dis},    
    year    = {2017},    
    doi     = {10.7883/yoken.jjid.2016.428},    
    pmid    = {28250261}        
    }
    @article{lin93148,
    title   = {An oral multispecies biofilm model for high content screening applications.},    
    author  = {Kommerein N, Stumpp SN, Musken M, Ehlert N, Winkel A, Haussler S, Behrens P, Buettner FF, Stiesch M.},    
    journal = {PLoS One},    
    year    = {2017},    
    doi     = {10.1371/journal.pone.0173973},    
    pmid    = {28296966}        
    }
    @article{lin93147,
    title   = {Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.},    
    author  = {Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.},    
    journal = {Sci Rep},    
    year    = {2017},    
    doi     = {10.1038/s41598-017-10369-z},    
    pmid    = {28887494}        
    }
    @article{lin93278,
    title   = {Inquiring into the Gaps of Campylobacter Surveillance Methods.},    
    author  = {Magana M, Chatzipanagiotou S, Burriel AR, Ioannidis A.},    
    journal = {Vet Sci},    
    year    = {2017},    
    doi     = {10.3390/vetsci4030036},    
    pmid    = {29056694}        
    }
    @article{lin93258,
    title   = {The direct and indirect association of cervical microbiota with the risk of cervical intraepithelial neoplasia.},    
    author  = {Zhang C, Liu Y, Gao W, Pan Y, Gao Y, Shen J, Xiong H.},    
    journal = {Cancer Med},    
    year    = {2018},    
    doi     = {10.1002/cam4.1471},    
    pmid    = {29608253}        
    }
    @article{lin93202,
    title   = {Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).},    
    author  = {Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-Garcia A, Rossen JW, Duim B, Wagenaar JA.},    
    journal = {Int J Syst Evol Microbiol},    
    year    = {2018},    
    doi     = {10.1099/ijsem.0.002742},    
    pmid    = {29624164}        
    }
    @article{lin93254,
    title   = {Limb salvage and reconstruction following a zebra attack.},    
    author  = {Carlson JT, Yuen JC, Smeds MR.},    
    journal = {Trauma Case Rep},    
    year    = {2017},    
    doi     = {10.1016/j.tcr.2017.01.009},    
    pmid    = {29644315}        
    }
    @article{lin93283,
    title   = {Pathogens transmitted in animal feces in low- and middle-income countries.},    
    author  = {Delahoy MJ, Wodnik B, McAliley L, Penakalapati G, Swarthout J, Freeman MC, Levy K.},    
    journal = {Int J Hyg Environ Health},    
    year    = {2018},    
    doi     = {10.1016/j.ijheh.2018.03.005},    
    pmid    = {29729998}        
    }
    @article{lin93153,
    title   = {Rapid urease test (RUT) for evaluation of urease activity in oral bacteria in vitro and in supragingival dental plaque ex vivo.},    
    author  = {Dahlen G, Hassan H, Blomqvist S, Carlen A.},    
    journal = {BMC Oral Health},    
    year    = {2018},    
    doi     = {10.1186/s12903-018-0541-3},    
    pmid    = {29776416}        
    }
    @article{lin93276,
    title   = {Diversity of macaque microbiota compared to the human counterparts.},    
    author  = {Chen Z, Yeoh YK, Hui M, Wong PY, Chan MCW, Ip M, Yu J, Burk RD, Chan FKL, Chan PKS.},    
    journal = {Sci Rep},    
    year    = {2018},    
    doi     = {10.1038/s41598-018-33950-6},    
    pmid    = {30349024}        
    }
    @article{lin93280,
    title   = {PhasomeIt: an 'omics' approach to cataloguing the potential breadth of phase variation in the genus Campylobacter.},    
    author  = {Aidley J, Wanford JJ, Green LR, Sheppard SK, Bayliss CD.},    
    journal = {Microb Genom},    
    year    = {2018},    
    doi     = {10.1099/mgen.0.000228},    
    pmid    = {30351264}        
    }
    @article{lin93223,
    title   = {Presence of <i>Helicobacter pylori</i> and <i>Campylobacter ureolyticus</i> in the oral cavity of a Northern Thailand population that experiences stomach pain.},    
    author  = {Basic A, Enerback H, Waldenstrom S, Ostgard E, Suksuart N, Dahlen G.},    
    journal = {J Oral Microbiol},    
    year    = {2018},    
    doi     = {10.1080/20002297.2018.1527655},    
    pmid    = {30357014}        
    }
    @article{lin93194,
    title   = {[Associations of Socioeconomic Factors,Nutrients Intake,and Gut Microbiota of Healthy Pregnant Women in the Third Trimester with Gestational Weight Gain].},    
    author  = {Ma LK, Xue Y, He TC, Zhang YM.},    
    journal = {Zhongguo Yi Xue Ke Xue Yuan Xue Bao},    
    year    = {2018},    
    doi     = {10.3881/j.issn.1000-503x.10505},    
    pmid    = {30404694}        
    }
    @article{lin93271,
    title   = {MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations.},    
    author  = {Perz AI, Giles CB, Brown CA, Porter H, Roopnarinesingh X, Wren JD.},    
    journal = {BMC Bioinformatics},    
    year    = {2019},    
    doi     = {10.1186/s12859-019-2623-x},    
    pmid    = {30871469}        
    }
    @article{lin93146,
    title   = {Pathogenomics of Emerging <i>Campylobacter</i> Species.},    
    author  = {Costa D, Iraola G.},    
    journal = {Clin Microbiol Rev},    
    year    = {2019},    
    doi     = {10.1128/cmr.00072-18},    
    pmid    = {31270126}        
    }
    @article{lin93219,
    title   = {Characterization and Analysis of the Skin Microbiota in Rosacea: A Case-Control Study.},    
    author  = {Rainer BM, Thompson KG, Antonescu C, Florea L, Mongodin EF, Bui J, Fischer AH, Pasieka HB, Garza LA, Kang S, Chien AL.},    
    journal = {Am J Clin Dermatol},    
    year    = {2020},    
    doi     = {10.1007/s40257-019-00471-5},    
    pmid    = {31502207}        
    }
    @article{lin93246,
    title   = {SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines.},    
    author  = {Gihawi A, Rallapalli G, Hurst R, Cooper CS, Leggett RM, Brewer DS.},    
    journal = {Genome Biol},    
    year    = {2019},    
    doi     = {10.1186/s13059-019-1819-8},    
    pmid    = {31639030}        
    }
    @article{lin93261,
    title   = {Successful Fecal Microbiota Transplantation in a Patient Suffering From Irritable Bowel Syndrome and Recurrent Urinary Tract Infections.},    
    author  = {Hocquart M, Pham T, Kuete E, Tomei E, Lagier JC, Raoult D.},    
    journal = {Open Forum Infect Dis},    
    year    = {2019},    
    doi     = {10.1093/ofid/ofz398},    
    pmid    = {31660360}        
    }
    @article{lin93277,
    title   = {Antimicrobial Resistance Gene Prevalence in a Population of Patients with Advanced Dementia Is Related to Specific Pathobionts.},    
    author  = {Rowan-Nash AD, Araos R, D'Agata EMC, Belenky P.},    
    journal = {iScience},    
    year    = {2020},    
    doi     = {10.1016/j.isci.2020.100905},    
    pmid    = {32106056}        
    }
    @article{lin93273,
    title   = {Composition of fecal microbiota in low-set rectal cancer patients treated with FOLFOX.},    
    author  = {Li J, Li J, Lyu N, Ma Y, Liu F, Feng Y, Yao L, Hou Z, Song X, Zhao H, Li X, Wang Y, Xiao C, Zhu B.},    
    journal = {Ther Adv Chronic Dis},    
    year    = {2020},    
    doi     = {10.1177/2040622320904293},    
    pmid    = {32153743}        
    }
    @article{lin93180,
    title   = {The Surface Microbiome of Clinically Unaffected Skinfolds in Hidradenitis Suppurativa: A Cross-Sectional Culture-Based and 16S rRNA Gene Amplicon Sequencing Study in 60 Patients.},    
    author  = {Riverain-Gillet E, Guet-Revillet H, Jais JP, Ungeheuer MN, Duchatelet S, Delage M, Lam T, Hovnanian A, Nassif A, Join-Lambert O.},    
    journal = {J Invest Dermatol},    
    year    = {2020},    
    doi     = {10.1016/j.jid.2020.02.046},    
    pmid    = {32339539}        
    }
    @article{lin93274,
    title   = {The neovaginal microbiome of transgender women post-gender reassignment surgery.},    
    author  = {Birse KD, Kratzer K, Zuend CF, Mutch S, Noel-Romas L, Lamont A, Abou M, Jalil E, Veloso V, Grinsztejn B, Friedman RK, Broliden K, Bradley F, Poliquin V, Li F, Yanavich C, Burgener A, Aldrovandi G.},    
    journal = {Microbiome},    
    year    = {2020},    
    doi     = {10.1186/s40168-020-00804-1},    
    pmid    = {32370783}        
    }
    @article{lin93270,
    title   = {Indonesian children fecal microbiome from birth until weaning was different from microbiomes of their mothers.},    
    author  = {Khine WWT, Rahayu ES, See TY, Kuah S, Salminen S, Nakayama J, Lee YK.},    
    journal = {Gut Microbes},    
    year    = {2020},    
    doi     = {10.1080/19490976.2020.1761240},    
    pmid    = {32453977}        
    }
    @article{lin93183,
    title   = {Rapid Reduction of <i>Campylobacter</i> Species in the Gut Microbiome of Preschool Children after Oral Azithromycin: A Randomized Controlled Trial.},    
    author  = {Hinterwirth A, Sie A, Coulibaly B, Ouermi L, Dah C, Tapsoba C, Zhong L, Chen C, Lietman TM, Keenan JD, Doan T, Oldenburg CE.},    
    journal = {Am J Trop Med Hyg},    
    year    = {2020},    
    doi     = {10.4269/ajtmh.19-0940},    
    pmid    = {32524948}        
    }
    @article{lin93175,
    title   = {Dysbiosis of salivary microbiome and cytokines influence oral squamous cell carcinoma through inflammation.},    
    author  = {Rai AK, Panda M, Das AK, Rahman T, Das R, Das K, Sarma A, Kataki AC, Chattopadhyay I.},    
    journal = {Arch Microbiol},    
    year    = {2021},    
    doi     = {10.1007/s00203-020-02011-w},    
    pmid    = {32783067}        
    }
    @article{lin93256,
    title   = {Microbiota in Rosacea.},    
    author  = {Kim HS.},    
    journal = {Am J Clin Dermatol},    
    year    = {2020},    
    doi     = {10.1007/s40257-020-00546-8},    
    pmid    = {32914214}        
    }
    @article{lin93239,
    title   = {Diversity and Composition of the Skin, Blood and Gut Microbiome in Rosacea-A Systematic Review of the Literature.},    
    author  = {Tutka K, Zychowska M, Reich A.},    
    journal = {Microorganisms},    
    year    = {2020},    
    doi     = {10.3390/microorganisms8111756},    
    pmid    = {33171692}        
    }
    @article{lin93267,
    title   = {Acquisition, Divergence, and Personalization of the Female Perineal Microbiomes Are Driven by Developmental Milestones and Disrupted by Urinary Tract Infection: A Pilot Study.},    
    author  = {Lucas EJ, Ching CB, Saraswat S, Dabdoub SM, Kumar PP, Justice SS.},    
    journal = {Front Pediatr},    
    year    = {2020},    
    doi     = {10.3389/fped.2020.542413},    
    pmid    = {33364220}        
    }
    @article{lin93264,
    title   = {A systematic review and meta-analysis reveal that Campylobacter spp. and antibiotic resistance are widespread in humans in sub-Saharan Africa.},    
    author  = {Hlashwayo DF, Sigauque B, Noormahomed EV, Afonso SMS, Mandomando IM, Bila CG.},    
    journal = {PLoS One},    
    year    = {2021},    
    doi     = {10.1371/journal.pone.0245951},    
    pmid    = {33503068}        
    }
    @article{lin93260,
    title   = {Clinical Characteristics, Risk Factors, and Population Attributable Fraction for Campylobacteriosis in a Nicaraguan Birth Cohort.},    
    author  = {St Jean DT, Herrera R, Perez C, Gutierrez L, Vielot NA, Gonzalez F, Reyes Y, Toval-Ruiz C, Blandon P, Kharabora O, Bowman NM, Bucardo F, Becker-Dreps S, Vilchez S.},    
    journal = {Am J Trop Med Hyg},    
    year    = {2021},    
    doi     = {10.4269/ajtmh.20-1317},    
    pmid    = {33534747}        
    }
    @article{lin93206,
    title   = {Identification of Lung and Blood Microbiota Implicated in COVID-19 Prognosis.},    
    author  = {Dereschuk K, Apostol L, Ranjan I, Chakladar J, Li WT, Rajasekaran M, Chang EY, Ongkeko WM.},    
    journal = {Cells},    
    year    = {2021},    
    doi     = {10.3390/cells10061452},    
    pmid    = {34200572}        
    }
    @article{lin93240,
    title   = {How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?-A Study by 16S-RNA Sequencing.},    
    author  = {Al-Ahmad A, Wollensak K, Rau S, Guevara Solarte DL, Paschke S, Lienkamp K, Staszewski O.},    
    journal = {Microorganisms},    
    year    = {2021},    
    doi     = {10.3390/microorganisms9071427},    
    pmid    = {34361863}        
    }
    @article{lin93253,
    title   = {Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.},    
    author  = {Armstrong G, Cantrell K, Huang S, McDonald D, Haiminen N, Carrieri AP, Zhu Q, Gonzalez A, McGrath I, Beck KL, Hakim D, Havulinna AS, Meric G, Niiranen T, Lahti L, Salomaa V, Jain M, Inouye M, Swafford AD, Kim HC, Parida L, Vazquez-Baeza Y, Knight R.},    
    journal = {Genome Res},    
    year    = {2021},    
    doi     = {10.1101/gr.275777.121},    
    pmid    = {34479875}        
    }
    @article{lin93166,
    title   = {Dysbiosis of Gut Microbiome Is Associated With Rupture of Cerebral Aneurysms.},    
    author  = {Kawabata S, Takagaki M, Nakamura H, Oki H, Motooka D, Nakamura S, Nishida T, Terada E, Izutsu N, Takenaka T, Matsui Y, Yamada S, Asai K, Tateishi A, Umehara T, Yano Y, Bamba Y, Matsumoto K, Kishikawa T, Okada Y, Iida T, Kishima H.},    
    journal = {Stroke},    
    year    = {2022},    
    doi     = {10.1161/strokeaha.121.034792},    
    pmid    = {34727738}        
    }
    @article{lin93226,
    title   = {A New PNA-FISH Probe Targeting <i>Fannyhessea vaginae</i>.},    
    author  = {Sousa LGV, Castro J, Franca A, Almeida C, Muzny CA, Cerca N.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2021},    
    doi     = {10.3389/fcimb.2021.779376},    
    pmid    = {34869078}        
    }
    @article{lin93188,
    title   = {Polymicrobial anaerobic bacterial meningitis secondary to dermal sinus: a case report.},    
    author  = {Luo L, Wang C, Shen N, Zhao R, Tao Y, Mo X, Cao Q.},    
    journal = {Transl Pediatr},    
    year    = {2021},    
    doi     = {10.21037/tp-21-210},    
    pmid    = {34976779}        
    }
    @article{lin93145,
    title   = {Probiotics-Containing Mucoadhesive Gel for Targeting the Dysbiosis Associated with Periodontal Diseases.},    
    author  = {Giannini G, Ragusa I, Nardone GN, Soldi S, Elli M, Valenti P, Rosa L, Marra E, Stoppoloni D, Merlo Pich E.},    
    journal = {Int J Dent},    
    year    = {2022},    
    doi     = {10.1155/2022/5007930},    
    pmid    = {35265133}        
    }
    @article{lin93266,
    title   = {Persistent, Asymptomatic Colonization with <i>Candida</i> is Associated with Elevated Frequencies of Highly Activated Cervical Th17-Like Cells and Related Cytokines in the Reproductive Tract of South African Adolescents.},    
    author  = {Happel AU, Gasper M, Balle C, Konstantinus I, Gamieldien H, Dabee S, Gill K, Bekker LG, Passmore JS, Jaspan HB.},    
    journal = {Microbiol Spectr},    
    year    = {2022},    
    doi     = {10.1128/spectrum.01626-21},    
    pmid    = {35348351}        
    }
    @article{lin93186,
    title   = {Gut bacteriobiota and mycobiota are both associated with Day-28 mortality among critically ill patients.},    
    author  = {Prevel R, Enaud R, Orieux A, Camino A, Berger P, Boyer A, Delhaes L, Gruson D.},    
    journal = {Crit Care},    
    year    = {2022},    
    doi     = {10.1186/s13054-022-03980-8},    
    pmid    = {35418098}        
    }
    @article{lin93243,
    title   = {Effects of wearing personal protective equipment during COVID-19 pandemic on composition and diversity of skin bacteria and fungi of medical workers.},    
    author  = {Lin X, Li YZ, Chen T, Min SH, Wang DF, Ding MM, Jiang G.},    
    journal = {J Eur Acad Dermatol Venereol},    
    year    = {2022},    
    doi     = {10.1111/jdv.18216},    
    pmid    = {35538594}        
    }
    @article{lin93155,
    title   = {Identification of Therapeutic Targets in an Emerging Gastrointestinal Pathogen <i>Campylobacter ureolyticus</i> and Possible Intervention through Natural Products.},    
    author  = {Khan K, Basharat Z, Jalal K, Mashraqi MM, Alzamami A, Alshamrani S, Uddin R.},    
    journal = {Antibiotics (Basel)},    
    year    = {2022},    
    doi     = {10.3390/antibiotics11050680},    
    pmid    = {35625323}        
    }
    @article{lin93250,
    title   = {Colonic mucosal microbiota is associated with bowel habit subtype and abdominal pain in patients with irritable bowel syndrome.},    
    author  = {Choo C, Mahurkar-Joshi S, Dong TS, Lenhart A, Lagishetty V, Jacobs JP, Labus JS, Jaffe N, Mayer EA, Chang L.},    
    journal = {Am J Physiol Gastrointest Liver Physiol},    
    year    = {2022},    
    doi     = {10.1152/ajpgi.00352.2021},    
    pmid    = {35726867}        
    }
    @article{lin93241,
    title   = {Genital Microbiota of Women From Six Ethnic Groups With and Without Human Papillomavirus Infection in Shangri-La, China.},    
    author  = {Liu CJ, Xiao WY, Fang JF, Dong YH, Ye KF, He MP, Wang YS, Li X, Zhao ZM, Yuan T, Zhao T, He CY, Zhang SM, Yang E, Wu XM, Li XR.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2022},    
    doi     = {10.3389/fcimb.2022.935068},    
    pmid    = {35873154}        
    }
    @article{lin93140,
    title   = {Silver Nanoparticles Produced by Laser Ablation and Re-Irradiation Are Effective Preventing Peri-Implantitis Multispecies Biofilm Formation.},    
    author  = {Perez-Tanoira R, Fernandez-Arias M, Potel C, Carballo-Fernandez R, Perez-Castro S, Boutinguiza M, Gorgolas M, Lusquinos F, Pou J.},    
    journal = {Int J Mol Sci},    
    year    = {2022},    
    doi     = {10.3390/ijms231912027},    
    pmid    = {36233328}        
    }
    @article{lin93141,
    title   = {Adhesion Forces of Oral Bacteria to Titanium and the Correlation with Biophysical Cellular Characteristics.},    
    author  = {Doll-Nikutta K, Winkel A, Yang I, Grote AJ, Meier N, Habib M, Menzel H, Behrens P, Stiesch M.},    
    journal = {Bioengineering (Basel)},    
    year    = {2022},    
    doi     = {10.3390/bioengineering9100567},    
    pmid    = {36290534}        
    }
    @article{lin93225,
    title   = {Genomic Diversity of Campylobacter lari Group Isolates from Europe and Australia in a One Health Context.},    
    author  = {Gourmelon M, Boukerb AM, Nabi N, Banerji S, Joensen KG, Serghine J, Cormier A, Megraud F, Lehours P, Alter T, Ingle DJ, Kirk MD, Nielsen EM.},    
    journal = {Appl Environ Microbiol},    
    year    = {2022},    
    doi     = {10.1128/aem.01368-22},    
    pmid    = {36354326}        
    }
    @article{lin93213,
    title   = {Urinary Microbiome of Reproductive-Age Asymptomatic European Women.},    
    author  = {Ugarcina Perovic S, Ksiezarek M, Rocha J, Cappelli EA, Sousa M, Ribeiro TG, Grosso F, Peixe L.},    
    journal = {Microbiol Spectr},    
    year    = {2022},    
    doi     = {10.1128/spectrum.01308-22},    
    pmid    = {36383025}        
    }
    @article{lin93234,
    title   = {A signature of <i>Prevotella copri</i> and <i>Faecalibacterium prausnitzii</i> depletion, and a link with bacterial glutamate degradation in the Kenyan colorectal cancer patients.},    
    author  = {Obuya S, Elkholy A, Avuthu N, Behring M, Bajpai P, Agarwal S, Kim HG, El-Nikhely N, Akinyi P, Orwa J, Afaq F, Abdalla M, Michael A, Farouk M, Bateman LB, Fouad M, Saleh M, Guda C, Manne U, Arafat W.},    
    journal = {J Gastrointest Oncol},    
    year    = {2022},    
    doi     = {10.21037/jgo-22-116},    
    pmid    = {36388691}        
    }
    @article{lin93207,
    title   = {Exposure to bacterial and fungal bioaerosols in facilities processing biodegradable waste.},    
    author  = {Kontro MH, Kirsi M, Laitinen SK.},    
    journal = {Front Public Health},    
    year    = {2022},    
    doi     = {10.3389/fpubh.2022.789861},    
    pmid    = {36466510}        
    }
    @article{lin93248,
    title   = {Alterations of the vaginal microbiome in healthy pregnant women positive for group B Streptococcus colonization during the third trimester.},    
    author  = {Shabayek S, Abdellah AM, Salah M, Ramadan M, Fahmy N.},    
    journal = {BMC Microbiol},    
    year    = {2022},    
    doi     = {10.1186/s12866-022-02730-8},    
    pmid    = {36544085}        
    }
    @article{lin93224,
    title   = {Association between microbial composition, diversity, and function of the maternal gastrointestinal microbiome with impaired glucose tolerance on the glucose challenge test.},    
    author  = {Dreisbach C, Prescott S, Alhusen J, Dudley D, Trinchieri G, Siega-Riz AM.},    
    journal = {PLoS One},    
    year    = {2022},    
    doi     = {10.1371/journal.pone.0271261},    
    pmid    = {36584051}        
    }
    @article{lin93255,
    title   = {Cervicovaginal-Microbiome Analysis by 16S Sequencing and Real-Time PCR in Patients from Novosibirsk (Russia) with Cervical Lesions and Several Years after Cancer Treatment.},    
    author  = {Ivanov MK, Brenner EV, Hodkevich AA, Dzyubenko VV, Krasilnikov SE, Mansurova AS, Vakhturova IE, Agletdinov EF, Shumeikina AO, Chernyshova AL, Titov SE.},    
    journal = {Diagnostics (Basel)},    
    year    = {2023},    
    doi     = {10.3390/diagnostics13010140},    
    pmid    = {36611432}        
    }
    @article{lin93262,
    title   = {Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response.},    
    author  = {Asangba AE, Chen J, Goergen KM, Larson MC, Oberg AL, Casarin J, Multinu F, Kaufmann SH, Mariani A, Chia N, Walther-Antonio MRS.},    
    journal = {Sci Rep},    
    year    = {2023},    
    doi     = {10.1038/s41598-023-27555-x},    
    pmid    = {36639731}        
    }
    @article{lin93268,
    title   = {Opisthorchis viverrini, Clonorchis sinensis and Opisthorchis felineus liver flukes affect mammalian host microbiome in a species-specific manner.},    
    author  = {Pakharukova MY, Lishai EA, Zaparina O, Baginskaya NV, Hong SJ, Sripa B, Mordvinov VA.},    
    journal = {PLoS Negl Trop Dis},    
    year    = {2023},    
    doi     = {10.1371/journal.pntd.0011111},    
    pmid    = {36780567}        
    }
    @article{lin93242,
    title   = {A Healthy Vaginal Microbiota Remains Stable during Oral Probiotic Supplementation: A Randomised Controlled Trial.},    
    author  = {Lyra A, Ala-Jaakkola R, Yeung N, Datta N, Evans K, Hibberd A, Lehtinen MJ, Forssten SD, Ibarra A, Pesonen T, Junnila J, Ouwehand AC, Baranowski K, Maukonen J, Crawford G, Lehtoranta L.},    
    journal = {Microorganisms},    
    year    = {2023},    
    doi     = {10.3390/microorganisms11020499},    
    pmid    = {36838464}        
    }
    @article{lin93251,
    title   = {Urogenital tract and rectal microbiota composition and its influence on reproductive outcomes in infertile patients.},    
    author  = {Dong YH, Fu Z, Zhang NN, Shao JY, Shen J, Yang E, Sun SY, Zhao ZM, Xiao A, Liu CJ, Li XR.},    
    journal = {Front Microbiol},    
    year    = {2023},    
    doi     = {10.3389/fmicb.2023.1051437},    
    pmid    = {36846767}        
    }
    @article{lin93190,
    title   = {Vaginal and neonatal microbiota in pregnant women with preterm premature rupture of membranes and consecutive early onset neonatal sepsis.},    
    author  = {Dos Anjos Borges LG, Pastuschek J, Heimann Y, Dawczynski K, PEONS study group, Schleussner E, Pieper DH, Zollkau J.},    
    journal = {BMC Med},    
    year    = {2023},    
    doi     = {10.1186/s12916-023-02805-x},    
    pmid    = {36907851}        
    }
    @article{lin93200,
    title   = {Bridging gut microbiota composition with extended-spectrum beta-lactamase Enterobacteriales faecal carriage in critically ill patients (microbe cohort study).},    
    author  = {Prevel R, Enaud R, Orieux A, Camino A, Sioniac P, M'Zali F, Dubois V, Berger P, Boyer A, Delhaes L, Gruson D.},    
    journal = {Ann Intensive Care},    
    year    = {2023},    
    doi     = {10.1186/s13613-023-01121-0},    
    pmid    = {37014580}        
    }
    @article{lin93154,
    title   = {Species Delineation and Comparative Genomics within the <i>Campylobacter ureolyticus</i> Complex.},    
    author  = {Maki JJ, Howard M, Connelly S, Pettengill MA, Hardy DJ, Cameron A.},    
    journal = {J Clin Microbiol},    
    year    = {2023},    
    doi     = {10.1128/jcm.00046-23},    
    pmid    = {37129508}        
    }
    @article{lin93138,
    title   = {Bioinformatics of cyanophycin metabolism genes and characterization of promiscuous isoaspartyl dipeptidases that catalyze the final step of cyanophycin degradation.},    
    author  = {Sharon I, Schmeing TM.},    
    journal = {Sci Rep},    
    year    = {2023},    
    doi     = {10.1038/s41598-023-34587-w},    
    pmid    = {37221236}        
    }
    @article{lin93237,
    title   = {Newly identified pathogens in periodontitis: evidence from an association and an elimination study.},    
    author  = {Veras EL, Castro Dos Santos N, Souza JGS, Figueiredo LC, Retamal-Valdes B, Barao VAR, Shibli J, Bertolini M, Faveri M, Teles F, Duarte P, Feres M.},    
    journal = {J Oral Microbiol},    
    year    = {2023},    
    doi     = {10.1080/20002297.2023.2213111},    
    pmid    = {37261036}        
    }
    @article{lin93199,
    title   = {Development of a Prevotella bivia PNA probe and a multiplex approach to detect three relevant species in bacterial vaginosis-associated biofilms.},    
    author  = {Sousa LGV, Almeida C, Muzny CA, Cerca N.},    
    journal = {NPJ Biofilms Microbiomes},    
    year    = {2023},    
    doi     = {10.1038/s41522-023-00411-6},    
    pmid    = {37353508}        
    }
    @article{lin93252,
    title   = {The microbiota of pregnant women with SARS-CoV-2 and their infants.},    
    author  = {Leftwich HK, Vargas-Robles D, Rojas-Correa M, Yap YR, Bhattarai S, Ward DV, Fujimori G, Forconi CS, Yeboah T, Carter A, Kastrinakis A, Asirwatham AM, Bucci V, Moormann AM, Maldonado-Contreras A.},    
    journal = {Microbiome},    
    year    = {2023},    
    doi     = {10.1186/s40168-023-01577-z},    
    pmid    = {37365606}        
    }
    @article{lin93247,
    title   = {Impact of antibiotics on gut microbiome composition and resistome in the first years of life in low- to middle-income countries: A systematic review.},    
    author  = {Luchen CC, Chibuye M, Spijker R, Simuyandi M, Chisenga C, Bosomprah S, Chilengi R, Schultsz C, Mende DR, Harris VC.},    
    journal = {PLoS Med},    
    year    = {2023},    
    doi     = {10.1371/journal.pmed.1004235},    
    pmid    = {37368871}        
    }
    @article{lin93259,
    title   = {Oral and anal microbiome from HIV-exposed individuals: role of host-associated factors in taxa composition and metabolic pathways.},    
    author  = {Lacunza E, Fink V, Salas ME, Canzoneri R, Naipauer J, Williams S, Coso O, Sued O, Cahn P, Mesri EA, Abba MC.},    
    journal = {NPJ Biofilms Microbiomes},    
    year    = {2023},    
    doi     = {10.1038/s41522-023-00413-4},    
    pmid    = {37438354}        
    }
    @article{lin93209,
    title   = {Genetic Causal Association Between the Gut Microbiome and Intracranial Aneurysm and Subarachnoid Hemorrhage: A Two-Sample Mendelian Randomization Study.},    
    author  = {He M, Wang W, He Q, Dai H, Han J, Cui W.},    
    journal = {Neurol Ther},    
    year    = {2023},    
    doi     = {10.1007/s40120-023-00525-1},    
    pmid    = {37440166}        
    }
    @article{lin93229,
    title   = {Young-onset Rectal Cancer: Unique Tumoral Microbiome and Correlation With Response to Neoadjuvant Therapy.},    
    author  = {White MG, Damania A, Alshenaifi J, Sahasrabhojane P, Peacock O, Losh J, Wong MC, Lutter-Berkova Z, Chang GJ, Futreal A, Wargo JA, Ajami NJ, Kopetz S, You YN.},    
    journal = {Ann Surg},    
    year    = {2023},    
    doi     = {10.1097/sla.0000000000006015},    
    pmid    = {37465976}        
    }
    @article{lin93233,
    title   = {Anti-<i>Vibrio parahaemolyticus</i> compounds from <i>Streptomyces parvus</i> based on Pan-genome and subtractive proteomics.},    
    author  = {Liu W, Ou P, Tian F, Liao J, Ma Y, Wang J, Jin X.},    
    journal = {Front Microbiol},    
    year    = {2023},    
    doi     = {10.3389/fmicb.2023.1218176},    
    pmid    = {37485508}        
    }
    @article{lin93244,
    title   = {Taxonomic and functional profiling of fecal metagenomes for the early detection of colorectal cancer.},    
    author  = {Wu X, Tang Z, Zhao R, Wang Y, Wang X, Liu S, Zou H.},    
    journal = {Front Oncol},    
    year    = {2023},    
    doi     = {10.3389/fonc.2023.1218056},    
    pmid    = {37601681}        
    }
    @article{lin93144,
    title   = {Tau-Marin Mucoadhesive Gel for Prevention and Treatment of Gum Diseases.},    
    author  = {Giannini G, Ragusa I, Nardone GN, Soldi S, Elli M, Valenti P, Rosa L.},    
    journal = {Gels},    
    year    = {2023},    
    doi     = {10.3390/gels9080607},    
    pmid    = {37623062}        
    }
    @article{lin93222,
    title   = {Investigating the Significance of Non-<i>jejuni</i>/<i>coli Campylobacter</i> Strains in Patients with Diarrhea.},    
    author  = {Teksoy N, Ilktac M, Ilktac M, Ongen B.},    
    journal = {Healthcare (Basel)},    
    year    = {2023},    
    doi     = {10.3390/healthcare11182562},    
    pmid    = {37761759}        
    }
    @article{lin93203,
    title   = {The Human Ocular Surface Microbiome and Its Associations with the Tear Proteome in Dry Eye Disease.},    
    author  = {Schlegel I, De Gouyon Matignon de Pontourade CMF, Lincke JB, Keller I, Zinkernagel MS, Zysset-Burri DC.},    
    journal = {Int J Mol Sci},    
    year    = {2023},    
    doi     = {10.3390/ijms241814091},    
    pmid    = {37762390}        
    }
    @article{lin93195,
    title   = {Higher abundance of Campylobacter in the oral microbiome of Japanese patients with moyamoya disease.},    
    author  = {Takayanagi K, Kanamori F, Ishii K, Yokoyama K, Araki Y, Sumitomo M, Maeda S, Goto S, Ota S, Nagata Y, Nishihori M, Maesawa S, Izumi T, Takasu S, Saito R.},    
    journal = {Sci Rep},    
    year    = {2023},    
    doi     = {10.1038/s41598-023-45755-3},    
    pmid    = {37899472}        
    }
    @article{lin93208,
    title   = {Gut microbiome in intracranial aneurysm growth, subarachnoid hemorrhage, and cerebral vasospasm: a systematic review with a narrative synthesis.},    
    author  = {Klepinowski T, Skonieczna-Zydecka K, Pala B, Stachowska E, Sagan L.},    
    journal = {Front Neurosci},    
    year    = {2023},    
    doi     = {10.3389/fnins.2023.1247151},    
    pmid    = {37928732}        
    }
    @article{lin93156,
    title   = {Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.},    
    author  = {Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.},    
    journal = {Saudi J Biol Sci},    
    year    = {2023},    
    doi     = {10.1016/j.sjbs.2023.103869},    
    pmid    = {38058762}        
    }
    @article{lin93164,
    title   = {VIBES: A consensus subtyping of the vaginal microbiota reveals novel classification criteria.},    
    author  = {Fernandez-Edreira D, Linares-Blanco J, V-Del-Rio P, Fernandez-Lozano C.},    
    journal = {Comput Struct Biotechnol J},    
    year    = {2024},    
    doi     = {10.1016/j.csbj.2023.11.050},    
    pmid    = {38144944}        
    }
    @article{lin93176,
    title   = {The Role of Gut and Oral Microbiota in the Formation and Rupture of Intracranial Aneurysms: A Literature Review.},    
    author  = {Joerger AK, Albrecht C, Rothhammer V, Neuhaus K, Wagner A, Meyer B, Wostrack M.},    
    journal = {Int J Mol Sci},    
    year    = {2023},    
    doi     = {10.3390/ijms25010048},    
    pmid    = {38203219}        
    }
    @article{lin93230,
    title   = {Rosacea, microbiome and probiotics: the gut-skin axis.},    
    author  = {Sanchez-Pellicer P, Eguren-Michelena C, Garcia-Gavin J, Llamas-Velasco M, Navarro-Moratalla L, Nunez-Delegido E, Aguera-Santos J, Navarro-Lopez V.},    
    journal = {Front Microbiol},    
    year    = {2023},    
    doi     = {10.3389/fmicb.2023.1323644},    
    pmid    = {38260914}        
    }
    @article{lin93217,
    title   = {Two-sample Mendelian randomization to study the causal association between gut microbiota and atherosclerosis.},    
    author  = {Jiang S, Yu C, Lv B, He S, Zheng Y, Yang W, Wang B, Li D, Lin J.},    
    journal = {Front Immunol},    
    year    = {2023},    
    doi     = {10.3389/fimmu.2023.1282072},    
    pmid    = {38283337}        
    }
    @article{lin93137,
    title   = {Colorimetric detection of oral bacteria using functionalized gold nanoparticles as a plasmonic biosensor array.},    
    author  = {Wenck C, Leopoldt D, Habib M, Hegermann J, Stiesch M, Doll-Nikutta K, Heisterkamp A, Torres-Mapa ML.},    
    journal = {Nanoscale Adv},    
    year    = {2024},    
    doi     = {10.1039/d3na00477e},    
    pmid    = {38419865}        
    }
    @article{lin93216,
    title   = {Uncovering the boundaries of <i>Campylobacter</i> species through large-scale phylogenetic and nucleotide identity analyses.},    
    author  = {Wu R, Payne M, Zhang L, Lan R.},    
    journal = {mSystems},    
    year    = {2024},    
    doi     = {10.1128/msystems.01218-23},    
    pmid    = {38530055}        
    }
    @article{lin93205,
    title   = {Prevalence, Diversity, and Virulence of <i>Campylobacter</i> Carried by Migratory Birds at Four Major Habitats in China.},    
    author  = {Wu S, Jia R, Wang Y, Li J, Li Y, Wang L, Wang Y, Liu C, Jia EM, Wang Y, Zhang G, Liu J.},    
    journal = {Pathogens},    
    year    = {2024},    
    doi     = {10.3390/pathogens13030230},    
    pmid    = {38535573}        
    }
    @article{lin93191,
    title   = {Causal relationship between gut microbiota and rosacea: a two-sample Mendelian randomization study.},    
    author  = {Li J, Yang F, Liu Y, Jiang X.},    
    journal = {Front Med (Lausanne)},    
    year    = {2024},    
    doi     = {10.3389/fmed.2024.1322685},    
    pmid    = {38585146}        
    }
    @article{lin93158,
    title   = {Cardiac Tamponade Caused by Campylobacter ureolyticus Purulent Effusion.},    
    author  = {Obregon M, Khan A.},    
    journal = {Cureus},    
    year    = {2024},    
    doi     = {10.7759/cureus.56051},    
    pmid    = {38618454}        
    }
    @article{lin93157,
    title   = {Using 16s rRNA sequencing to characterize the microbiome of tropical cutaneous ulcer disease: insights into the microbial landscape and implications for diagnosis and treatment.},    
    author  = {Handley BL, Sokana O, Addo KK, Wagner J, Fookes M, Harding-Esch E, Marks M, Thomson NR, Doyle RM.},    
    journal = {Microb Genom},    
    year    = {2024},    
    doi     = {10.1099/mgen.0.001234},    
    pmid    = {38739120}        
    }
    @article{lin93135,
    title   = {Effect of Dentifrice Ingredients on Volume and Vitality of a Simulated Periodontal Multispecies Biofilm.},    
    author  = {Karacic J, Ruf M, Herzog J, Astasov-Frauenhoffer M, Sahrmann P.},    
    journal = {Dent J (Basel)},    
    year    = {2024},    
    doi     = {10.3390/dj12050141},    
    pmid    = {38786539}        
    }
    @article{lin93245,
    title   = {Anaerobes in diabetic foot infections: pathophysiology, epidemiology, virulence, and management.},    
    author  = {Villa F, Marchandin H, Lavigne J-P, Schuldiner S, Cellier N, Sotto A, Loubet P.},    
    journal = {Clin Microbiol Rev},    
    year    = {2024},    
    doi     = {10.1128/cmr.00143-23},    
    pmid    = {38819166}        
    }
    @article{lin93168,
    title   = {In-depth Microbiological Characterization of Urine From Subjects With Type 2 Diabetes.},    
    author  = {Calvigioni M, Biancalana E, Mazzantini D, Celandroni F, Rossi C, Mengozzi A, Ghelardi E, Solini A.},    
    journal = {J Clin Endocrinol Metab},    
    year    = {2024},    
    doi     = {10.1210/clinem/dgae389},    
    pmid    = {38870276}        
    }
    @article{lin93189,
    title   = {Association of Weather Variables With Pathogens Contributing to Conjunctivitis Worldwide.},    
    author  = {Yan D, Prajna NV, Lalitha P, Sansanayudh W, Satitpitakul V, Laovirojjanakul W, Chaudhary M, Bountogo M, Sie A, Coulibaly B, Amza A, Nassirou B, Almou I, Tran H, Tran Y, Tsui E, Onclinx T, Sella R, Goren L, McClean E, Tham V, Chen C, Ouimette K, Zhong L, Liu Y, Yu D, Abraham T, Lebas E, Arnold BF, McLeod SD, Deiner MS, Porco TC, Seitzman GD, Lietman TM, Shantha J, Hinterwirth A, Doan T.},    
    journal = {Clin Infect Dis},    
    year    = {2025},    
    doi     = {10.1093/cid/ciae417},    
    pmid    = {39158989}        
    }
    @article{lin93204,
    title   = {Isolation, characterization, and antimicrobial resistance profiles of <i>Campylobacter jejuni</i> and <i>Campylobacter coli</i> from raw meat of large livestock in Shahrekord, Iran.},    
    author  = {Rahimi E, Mousavinafchi SB, Shakerian A.},    
    journal = {Arch Razi Inst},    
    year    = {2024},    
    doi     = {10.32592/ari.2024.79.1.41},    
    pmid    = {39192957}        
    }
    @article{lin93249,
    title   = {Helicobacter pylori in oral cavity: current knowledge.},    
    author  = {Costa LCMC, Carvalho MDG, Vale FF, Marques AT, Rasmussen LT, Chen T, Barros-Pinheiro M.},    
    journal = {Clin Exp Med},    
    year    = {2024},    
    doi     = {10.1007/s10238-024-01474-1},    
    pmid    = {39230790}        
    }
    @article{lin93220,
    title   = {Legendary fermented herbs: an ethnobotanical study of the traditional fermentation starter of the Chuanqing people in Northwestern Guizhou, China.},    
    author  = {Zhao J, Wang Q, Ren Z, Yang C, Guan S, Wang X, Huang Y, Yao R, Yin H.},    
    journal = {J Ethnobiol Ethnomed},    
    year    = {2024},    
    doi     = {10.1186/s13002-024-00708-6},    
    pmid    = {39252023}        
    }
    @article{lin93173,
    title   = {Describing the Reproductive Microbiome of <i>Tritrichomonas foetus</i> Chronically Infected Bulls and Diagnostic Collection Device Performance.},    
    author  = {Boggan S, Awosile B, Koziol J.},    
    journal = {Animals (Basel)},    
    year    = {2024},    
    doi     = {10.3390/ani14182689},    
    pmid    = {39335278}        
    }
    @article{lin93165,
    title   = {Follicular Skin Disorders, Inflammatory Bowel Disease, and the Microbiome: A Systematic Review.},    
    author  = {Fleshner L, Roster K, Farabi B, Hirani R, Tepper K, Pitchumoni CS, Safai B, Marmon S.},    
    journal = {Int J Mol Sci},    
    year    = {2024},    
    doi     = {10.3390/ijms251810203},    
    pmid    = {39337688}        
    }
    @article{lin93193,
    title   = {Visceral adiposity in postmenopausal women is associated with a pro-inflammatory gut microbiome and immunogenic metabolic endotoxemia.},    
    author  = {Gaber M, Wilson AS, Millen AE, Hovey KM, LaMonte MJ, Wactawski-Wende J, Ochs-Balcom HM, Cook KL.},    
    journal = {Microbiome},    
    year    = {2024},    
    doi     = {10.1186/s40168-024-01901-1},    
    pmid    = {39367431}        
    }
    @article{lin93177,
    title   = {Multi-year comparison of VITEK MS performance for identification of rarely encountered pathogenic Gram-negative organisms (GNOs) in a large integrated Canadian healthcare region.},    
    author  = {Church DL, Griener T, Gregson D.},    
    journal = {Microbiol Spectr},    
    year    = {2024},    
    doi     = {10.1128/spectrum.02276-24},    
    pmid    = {39436124}        
    }
    @article{lin93214,
    title   = {Differential Urinary Microbiome and Its Metabolic Footprint in Bladder Cancer Patients Following BCG Treatment.},    
    author  = {Min K, Zheng CM, Kim S, Kim H, Lee M, Piao XM, Byun YJ, Kim Y, Joo Y, Cho B, Moon S, Kim WT, Kang HW, Park H, Yun SJ.},    
    journal = {Int J Mol Sci},    
    year    = {2024},    
    doi     = {10.3390/ijms252011157},    
    pmid    = {39456941}        
    }
    @article{lin93171,
    title   = {<i>Streptococcus dysgalactiae subsp.-equisimilis</i> as an emerging secondary pathogen in leprosy foot ulcers.},    
    author  = {Ebineshan K, Pallapati MS, Srikantam A.},    
    journal = {Iran J Microbiol},    
    year    = {2024},    
    doi     = {10.18502/ijm.v16i5.16795},    
    pmid    = {39534289}        
    }
    @article{lin93170,
    title   = {<i>Campylobacter sputorum</i> subsp. <i>bovis</i> subsp. nov., isolated from cattle, and an emended description of <i>Campylobacter sputorum</i>.},    
    author  = {Miller WG, Williams TG, Wood DF, Chapman MH.},    
    journal = {Int J Syst Evol Microbiol},    
    year    = {2024},    
    doi     = {10.1099/ijsem.0.006571},    
    pmid    = {39535936}        
    }
    @article{lin93182,
    title   = {Optimizing microbiome reference databases with PacBio full-length 16S rRNA sequencing for enhanced taxonomic classification and biomarker discovery.},    
    author  = {Han H, Choi YH, Kim SY, Park JH, Chung J, Na HS.},    
    journal = {Front Microbiol},    
    year    = {2024},    
    doi     = {10.3389/fmicb.2024.1485073},    
    pmid    = {39654676}        
    }
    @article{lin93210,
    title   = {Geospatial Analysis of Multilevel Socioenvironmental Factors Impacting the Campylobacter Burden among Infants in Rural Eastern Ethiopia: A One Health Perspective.},    
    author  = {Li X, Chen D, Liang S, Hassen JY, McKune SL, Havelaar AH, Blackburn JK.},    
    journal = {Am J Trop Med Hyg},    
    year    = {2025},    
    doi     = {10.4269/ajtmh.24-0401},    
    pmid    = {39742520}        
    }
    @article{lin93201,
    title   = {Exploring the Link Between Infections and Primary Osteoarthritis: A Next-Generation Metagenomic Sequencing Approach.},    
    author  = {Niecwietajewa I, Banasiewicz J, Zaremba-Wroblewski G, Majewska A.},    
    journal = {Int J Mol Sci},    
    year    = {2024},    
    doi     = {10.3390/ijms26010020},    
    pmid    = {39795878}        
    }
    @article{lin93169,
    title   = {Causal relationship between skin microbiota and Hidradenitis suppurativa: a two-sample Mendelian randomization study.},    
    author  = {Guo S, Li P, Lu J, Zhou P, Sun B, Wang J.},    
    journal = {Arch Dermatol Res},    
    year    = {2025},    
    doi     = {10.1007/s00403-024-03787-3},    
    pmid    = {39804488}        
    }
    @article{lin93162,
    title   = {Campylobacter fetus subsp. fetus: an unforeseen cause of abortion in regional Australia.},    
    author  = {Owusu-Ansa I, Ramadas M, Jacob N, Ayeni FE.},    
    journal = {Access Microbiol},    
    year    = {2025},    
    doi     = {10.1099/acmi.0.000889.v5},    
    pmid    = {39959469}        
    }
    @article{lin93232,
    title   = {Metabarcoding analysis of the microbiota in flocks naturally infected by <i>Coxiella burnetii</i>: First description of the global microbiota in domestic small ruminants.},    
    author  = {Toledo-Perona R, Gomez-Martin A, Contreras A, Toquet M, Quereda JJ, Esnal A, Gonzalez-Torres P, Gomis J.},    
    journal = {One Health},    
    year    = {2025},    
    doi     = {10.1016/j.onehlt.2025.100996},    
    pmid    = {40093541}        
    }
    @article{lin93160,
    title   = {Unraveling the Skin Microbiome in Hidradenitis Suppurativa: Implications for Treatment and Disease Progression.},    
    author  = {Cucu CI, Giurcaneanu C, Mihai MM, Andronic T, Ancuta I, Popa MI, Macovei IS, Popa LG.},    
    journal = {J Clin Med},    
    year    = {2025},    
    doi     = {10.3390/jcm14072424},    
    pmid    = {40217873}        
    }
    @article{lin93179,
    title   = {The clinic application of mNGS and ENA-78 assays to identify intra-amniotic infection/inflammation.},    
    author  = {Shen D, Ju H, Wang H, Wang X, Li G.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2025},    
    doi     = {10.3389/fcimb.2025.1510671},    
    pmid    = {40256453}        
    }
    @article{lin93181,
    title   = {Integrated analysis of microbiome and metabolome reveals insights into cervical neoplasia aggravation in a Chinese cohort.},    
    author  = {Zhai Q, Zhao L, Wang M, Li L, Li LA, Ye M, Li M, Xu C, Meng Y.},    
    journal = {Front Cell Infect Microbiol},    
    year    = {2025},    
    doi     = {10.3389/fcimb.2025.1556153},    
    pmid    = {40406520}        
    }
    @article{lin93178,
    title   = {Distinct Gut Microbiota Profiles in Unruptured and Ruptured Intracranial Aneurysms: Focus on Butyrate-Producing Bacteria.},    
    author  = {Csecsei P, Takacs B, Pasitka L, Varnai R, Peterfi Z, Orban B, Czabajszki M, Olah C, Schwarcz A.},    
    journal = {J Clin Med},    
    year    = {2025},    
    doi     = {10.3390/jcm14103488},    
    pmid    = {40429482}        
    }
    @article{lin93172,
    title   = {Identification of Novel Gene-Specific Markers for Differentiating Various Pathogenic <i>Campylobacter</i> Species Using a Pangenome Analysis Approach.},    
    author  = {Kuufire E, Bentum KE, Nyarku R, Osei V, Elrefaey A, James T, Woube Y, Folitse R, Samuel T, Abebe W.},    
    journal = {Pathogens},    
    year    = {2025},    
    doi     = {10.3390/pathogens14050477},    
    pmid    = {40430797}        
    }
    @article{lin93163,
    title   = {Investigating Skin Microbial Community in Malignant Melanoma Lesions.},    
    author  = {Properzi M, Dimartino V, Pietrucci D, Fontana C, Rotondo C, Lembo L, Ricci F, Scatozza F, Di Lella G, Messina F, Chillemi G, Bartolini B, Facchiano A.},    
    journal = {Microorganisms},    
    year    = {2025},    
    doi     = {10.3390/microorganisms13050992},    
    pmid    = {40431165}        
    }
    @article{lin93196,
    title   = {Toward accurate vaginal microbiome profiling: protocol, bioinformatics, and core microbiota characterisation.},    
    author  = {Davidson IM, Nikbakht E, Haupt LM, Dunn PJ.},    
    journal = {J Assist Reprod Genet},    
    year    = {2025},    
    doi     = {10.1007/s10815-025-03509-2},    
    pmid    = {40439988}        
    }
    @article{lin93159,
    title   = {Divergence in the sow vaginal microbiota is associated with fertility.},    
    author  = {Fletcher L, Zhan X, Song Y, Li J.},    
    journal = {Reproduction},    
    year    = {2025},    
    doi     = {10.1530/rep-25-0044},    
    pmid    = {40470844}        
    }
    @article{lin93221,
    title   = {Will gut, oral, and vaginal microbiota influence the outcome of FET or be influenced by FET? A pilot study.},    
    author  = {Zhang Z, Zhang Y, Wu A, Xu C, Li Z.},    
    journal = {mBio},    
    year    = {2025},    
    doi     = {10.1128/mbio.00509-25},    
    pmid    = {40525871}        
    }
    @article{lin93192,
    title   = {Heritable Tissue-Specific Gene Expression Associates With Chronic Wound Microbial Species.},    
    author  = {Omeir K, Ancira J, Gabrilska R, Tipton C, Miller C, Noe A, Subasinghe K, Rowe M, Phillips N, Wolcott J, Philips CD.},    
    journal = {Wound Repair Regen},    
    year    = {2025},    
    doi     = {10.1111/wrr.70055},    
    pmid    = {40576243}        
    }
    @article{lin93197,
    title   = {Adverse pregnancy outcomes in women with type 1 diabetes are associated with multiple alterations in the vaginal microbiome.},    
    author  = {Roth-Schulze AJ, Bandala-Sanchez E, Ngui KM, Naselli G, Oakey H, Ashwood P, Martin G, Brown JD, Zozaya-Valdes E, Thomson RL, Colman PG, Wentworth JM, Vuillermin PJ, Hunyh T, Soldatos G, Couper JJ, Penno MAS, Harrison LC, ENDIA Study Group.},    
    journal = {Diabetologia},    
    year    = {2025},    
    doi     = {10.1007/s00125-025-06509-0},    
    pmid    = {40775532}        
    }
    @article{lin93161,
    title   = {Insights into the tripartite relationship between cervical cancer, human papillomavirus, and the vaginal microbiome: a mega-analysis.},    
    author  = {Rashwan HH, Ali MH, Mostafa MM, Ramadan R, Mysara M.},    
    journal = {Hum Genomics},    
    year    = {2025},    
    doi     = {10.1186/s40246-025-00795-w},    
    pmid    = {40797356}        
    }
    @article{lin93184,
    title   = {Multi-omics analysis reveals the host-microbe interactions on the dysbiosis of tissue microbiota in male genital lichen sclerosus-induced urethral strictures.},    
    author  = {Yu Z, Wang Z, Mao G, Tang J, Zhang R, Song L, Xiu X.},    
    journal = {Microbiol Spectr},    
    year    = {2025},    
    doi     = {10.1128/spectrum.00074-25},    
    pmid    = {40823862}        
    }
    @article{lin93134,
    title   = {Influence of species composition and cultivation condition on peri-implant biofilm dysbiosis <i>in vitro</i>.},    
    author  = {Heine N, Bittroff K, Szafranski SP, Duitscher M, Behrens W, Vollmer C, Mikolai C, Kommerein N, Debener N, Frings K, Heisterkamp A, Scheper T, Torres-Mapa ML, Bahnemann J, Stiesch M, Doll-Nikutta K.},    
    journal = {Front Oral Health},    
    year    = {2025},    
    doi     = {10.3389/froh.2025.1649419},    
    pmid    = {40978156}        
    }
    @article{lin93174,
    title   = {Identification of urinary bacterial genes as biomarkers for non-invasive diagnosis of renal lupus.},    
    author  = {Perez-Carrasco V, Soriano-Lerma A, Guzzi C, Garcia-Martin ML, Tello MJ, Linde-Rodriguez A, Sanchez-Martin V, Ortiz-Gonzalez M, PRECISESADS Clinical Consortium, Gutierrez-Fernandez J, Alarcon-Riquelme ME, Soriano M, Maranon C, Garcia-Salcedo JA.},    
    journal = {Biomark Res},    
    year    = {2025},    
    doi     = {10.1186/s40364-025-00828-5},    
    pmid    = {41013652}        
    }
    @article{lin93167,
    title   = {Concentrations of ciprofloxacin in food defined as safe alter the gut microbiome and ciprofloxacin susceptibility in humans: an interventional clinical study.},    
    author  = {Manoharan-Basil S, Gestels Z, Abdellati S, Vanbaelen T, Van Den Bossche D, van Alebeek L, Van Herrewege Y, Poppe L, Vandenhove L, Bracke S, Smekens B, Jacobs B, Genbrugge E, Kenyon C.},    
    journal = {Sci Rep},    
    year    = {2025},    
    doi     = {10.1038/s41598-025-18714-3},    
    pmid    = {41057417}        
    }
