Campylobacter ureolyticus (CCUG 18470)

Name: Campylobacter ureolyticus (CCUG 18470)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 143334

Type strain

Culture col. no. CCUG 18470

NCBI tax ID(s) 827

Special Collections CCUG

Links

Campylobacter ureolyticus CCUG 18470 is an anaerobe, mesophilic prokaryote that was isolated from Human urine,81-yr-old man,bladder stone.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 51895

CCUG 18470

@ref 20215

Last LPSN update 2025-12-16 10:04:20

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter ureolyticus

Full scientific name Campylobacter ureolyticus (Jackson and Goodman 1978) Vandamme et al. 2010

Synonyms (1)

Bacteroides ureolyticus

BacDive ID	Other strains from **Campylobacter ureolyticus** (35)	Type strain
2102	C. ureolyticus EDMH-1, DSM 20703, ATCC 33387, CCUG 7319, ... (type strain)
141784	C. ureolyticus CCUG 6738
141987	C. ureolyticus CCUG 9510 D
141995	C. ureolyticus CCUG 9596 B
141997	C. ureolyticus CCUG 9666 C
142025	C. ureolyticus CCUG 10017 B
142335	C. ureolyticus CCUG 11762
142881	C. ureolyticus CCUG 15536 D
143421	C. ureolyticus CCUG 19065
143826	C. ureolyticus CCUG 21314
144599	C. ureolyticus CCUG 25886
144696	C. ureolyticus CCUG 26306
145128	C. ureolyticus CCUG 27722
145129	C. ureolyticus CCUG 27723
145752	C. ureolyticus CCUG 29476
146428	C. ureolyticus CCUG 31113
146491	C. ureolyticus CCUG 31312
146889	C. ureolyticus CCUG 32378, LMG 11766
148133	C. ureolyticus CCUG 34880
149021	C. ureolyticus CCUG 36739 A
149583	C. ureolyticus CCUG 38011
150127	C. ureolyticus CCUG 39053 A
150197	C. ureolyticus CCUG 39261 A
151385	C. ureolyticus CCUG 44020 B
151553	C. ureolyticus CCUG 44295
151554	C. ureolyticus CCUG 44296
152135	C. ureolyticus CCUG 45874
153131	C. ureolyticus CCUG 48545
153380	C. ureolyticus CCUG 49390
153983	C. ureolyticus CCUG 51835 B
154032	C. ureolyticus CCUG 52055
155273	C. ureolyticus CCUG 57163
155778	C. ureolyticus CCUG 59288
155848	C. ureolyticus CCUG 59468
155986	C. ureolyticus CCUG 59897

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.3
125438	negative	97.983

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
46841	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

46841

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		93.606

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	+	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	+	3.5.1.5	from API rID32A

Fatty acid profile

Metadata FA analysis

@ref

46841

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	55.7	17.824
C16:0	12.1	16
C14:0	6.1	14
C14:0 3OH/C16:1 ISO I	5.7	15.485
C12:0	5.6	12
C18:0	3.3	18
C16:0 3OH	2.9	17.52
C13:1 at 12-13	2.2	12.931
C18:2 ω6,9c/C18:0 ANTE	1.9	17.724
C16:1 ω7c	1.7	15.819
C12:0 ALDE ?	1.6	10.915
C18:1 ω9c	0.6	17.769
unknown 14.503	0.6	14.503

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
46841	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Fluids	#Urine
#Host Body Product	#Urogenital tract	#Bladder stone
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
46841	Human urine,81-yr-old man,bladder stone	1986-01-29	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2472355v1 assembly for Campylobacter ureolyticus CCUG 18470	contig	GCA_024723555	827.163	827	71.69

Genome browser: GCA_024723555

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter ureolyticus CCUG 18470
NCBI: GCA_024723555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	89.70	no
125439	motility	BacteriaNetⓘ	no	62.20	no
125439	gram_stain	BacteriaNetⓘ	negative	95.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	74.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter ureolyticus CCUG 18470
NCBI: GCA_024723555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	yes	58.78	yes
125438	aerobic	aerobicⓘ	no	85.25	yes
125438	spore-forming	spore-formingⓘ	no	93.61	no
125438	thermophilic	thermophileⓘ	no	91.62	no
125438	flagellated	motile2+ⓘ	no	69.73	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#46841	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18470
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter ureolyticus (CCUG 18470)

Name and taxonomic classification