Cupriavidus pauculus (DSM 17313, CCM 4867, CCUG 12507)

Name: Cupriavidus pauculus (DSM 17313, CCM 4867, CCUG 12507)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2043

Type strain

Strain Designation E6793

Culture col. no. DSM 17313 CCM 4867 CCUG 12507 CDC E6793 CIP 105943 6 more

NCBI tax ID(s) 82633

Special Collections DSMZ CCUG JCM CIP

Links

Cupriavidus pauculus E6793 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from human, respiratory tract.

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1696

LMG 3244,ATCC 700817,CCUG 12507,JCM 11286,CIP 105943,CCM 4867,DSM 17313,BCRC 17496,CCRC 17496

@ref 20215

Last LPSN update 2025-12-16 09:47:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Cupriavidus

Species Cupriavidus pauculus

Full scientific name Cupriavidus pauculus (Vandamme et al. 1999) Vandamme and Coenye 2004

Synonyms (2)

Ralstonia paucula
Wautersia paucula

BacDive ID	Other strains from **Cupriavidus pauculus** (27)	Type strain
134523	C. pauculus 7892/75, CIP 105944, CCUG 4424, LMG 3320
136319	C. pauculus G608, CIP 104523
137630	C. pauculus CIP 102485
137670	C. pauculus G3900, CIP 104522
137831	C. pauculus 38043, CIP 101080
138069	C. pauculus G6817, CIP 104521
138070	C. pauculus F4862, CIP 104524
138275	C. pauculus CIP 105945, CCUG 11264, LMG 3319
138404	C. pauculus 1885, CIP 100008
138422	C. pauculus CIP 62.31, IAM 12592, CCUG 13723, LMG 3413, ...
142420	C. pauculus CCUG 12442
142421	C. pauculus CCUG 12443, LMG 3318
142422	C. pauculus CCUG 12444
142423	C. pauculus CCUG 12446, LMG 3317
142544	C. pauculus CCUG 12925
142548	C. pauculus CCUG 12942
144222	C. pauculus CCUG 23700
144354	C. pauculus CCUG 24723, LMG 15544
144473	C. pauculus CCUG 25099
146465	C. pauculus CCUG 31221
146707	C. pauculus CCUG 31999
151065	C. pauculus CCUG 43196
151134	C. pauculus CCUG 43343
152145	C. pauculus CCUG 45888
153977	C. pauculus CCUG 51824
156338	C. pauculus CCUG 61205
156769	C. pauculus CCUG 65026

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121637	negative	rod-shaped
125439	negative		98.3
125438	negative		97.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6891	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38594	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
121637	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6891	positive	growth	37	mesophilic
38594	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
121637	positive	growth	15-45
121637	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121637	obligate aerobe
125438	aerobe	91.153
125439	aerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121637	NaCl	positive	growth	0-2 %
121637	NaCl		growth	4 %
121637	NaCl		growth	6 %
121637	NaCl		growth	8 %
121637	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
121637	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	-	builds acid from	from API ID32E
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68374	16899 ChEBI	D-mannitol	-	builds acid from	from API ID32E
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
121637	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
121637	606565 ChEBI	hippurate	+	hydrolysis
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68374	15792 ChEBI	malonate	+	assimilation	from API ID32E
121637	15792 ChEBI	malonate	+	assimilation
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
121637	17632 ChEBI	nitrate	-	builds gas from
121637	17632 ChEBI	nitrate	-	reduction
121637	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121637	16301 ChEBI	nitrite	-	builds gas from
121637	16301 ChEBI	nitrite	-	reduction
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68374	17992 ChEBI	sucrose	-	builds acid from	from API ID32E
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68374	27082 ChEBI	trehalose	-	builds acid from	from API ID32E
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68374	27897 ChEBI	tryptophan	-	energy source	from API ID32E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68374	16199 ChEBI	urea	+	hydrolysis	from API ID32E
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121637	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68374	35581 ChEBI	indole	from API ID32E
121637	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
121637	15688 ChEBI	acetoin		-
121637	17234 ChEBI	glucose			-
68374	35581 ChEBI	indole	-			from API ID32E
68369	35581 ChEBI	indole	-			from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121637	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121637	amylase	-
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
121637	beta-galactosidase	-	3.2.1.23
68374	beta-galactosidase	-	3.2.1.23	from API ID32E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
121637	caseinase	-	3.4.21.50
121637	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
121637	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121637	gamma-glutamyltransferase	-	2.3.2.2
121637	gelatinase	-
68369	gelatinase	-		from API 20NE
68374	L-aspartate arylamidase	+	3.4.11.21	from API ID32E
121637	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
121637	lipase	+
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
121637	lysine decarboxylase	-	4.1.1.18
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121637	ornithine decarboxylase	-	4.1.1.17
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
121637	oxidase	+
121637	phenylalanine ammonia-lyase	-	4.3.1.24
121637	protease	-
68382	trypsin	-	3.4.21.4	from API zym
121637	tryptophan deaminase	-
121637	tween esterase	+
121637	urease	+	3.5.1.5
68374	urease	+	3.5.1.5	from API ID32E
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121637	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6891	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121637	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
45728	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121637	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	+	+	+	+	+	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	-	-	-	-	+	+	+	+	+	-	+	-	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Trachea

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6891	human, respiratory tract		USA	USA	North America
45728	Human respiratory tract (endotrachea)	Oregon	USA	USA	North America
67770	Respiratory tract of human
121637	Human, Respiratory tract	Oregon	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence EU024165 (>99% sequence identity) for Cupriavidus from Microbeatlas

Aquatic Samples	114
Soil Samples	158
Animal Samples	238
Plant Samples	53
Total Samples	563

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6891	2	Risk group (German classification) According to TRBA 466
121637	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Cupriavidus pauculus strain FDAARGOS_1472	complete		82633.27		82633	98.8
66792	Cupriavidus pauculus strain FDAARGOS_1472	complete		82633.24		82633	98.8
66792	Cupriavidus pauculus strain FDAARGOS_1472	complete		82633.22		82633	98.8
124043	ASM1993104v1 assembly for Cupriavidus pauculus FDAARGOS_1472	complete	GCA_019931045	82633.20	8120345670	82633	97.1
67770	ASM880183v1 assembly for Cupriavidus pauculus CCUG 12507	contig	GCA_008801835	82633.14	8115756523	82633	55.92
124043	ASM3952283v1 assembly for Cupriavidus pauculus JCM 11286	scaffold	GCA_039522835			82633	51.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Cupriavidus pauculus strain CIP 105943 16S ribosomal RNA gene, partial sequence	EU024165	1315		82633

GC content

@ref	GC-content (mol%)	Method
67770	67	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cupriavidus pauculus strain FDAARGOS_1472
PATRIC: 82633.20

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	yes	71.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cupriavidus pauculus strain FDAARGOS_1472 strain Not applicable
PATRIC: 82633.20

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	98.56	yes
125438	aerobic	aerobicⓘ	yes	91.15	yes
125438	spore-forming	spore-formingⓘ	no	87.62	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	80.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil.	Ara I, Moriuchi R, Dohra H, Kimbara K, Ogawa N, Shintani M.	Microorganisms	10.3390/microorganisms11071684	2023
Phylogeny	Taxonomy of the genus Cupriavidus: a tale of lost and found.	Vandamme P, Coenye T	Int J Syst Evol Microbiol	10.1099/ijs.0.63247-0	2004
Phylogeny	Assignment of Centers for Disease Control group IVc-2 to the genus Ralstonia as Ralstonia paucula sp. nov.	Vandamme P, Goris J, Coenye T, Hoste B, Janssens D, Kersters K, De Vos P, Falsen E	Int J Syst Bacteriol	10.1099/00207713-49-2-663	1999

References

#6891	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17313
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38594	; Curators of the CIP;
#45728	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12507
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121637	Collection of Institut Pasteur ; Curators of the CIP; CIP 105943
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cupriavidus pauculus (DSM 17313, CCM 4867, CCUG 12507)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API 50CHac

API ID32E

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019931045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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