Strain identifier

BacDive ID: 2043

Type strain: Yes

Species: Cupriavidus pauculus

Culture col. no.: DSM 17313, CCM 4867, CCUG 12507, CDC E6793, CIP 105943, LMG 3244

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6891

BacDive-ID: 2043

DSM-Number: 17313

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Cupriavidus pauculus DSM 17313 is a mesophilic bacterium that was isolated from human endotrachea.

strain history: <- CCUG <- K. Kersters, LMG Gent <-R. E. Weaver, CDC Atlanta

doi: 10.13145/bacdive2043.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Cupriavidus
  • species: Cupriavidus pauculus
  • full scientific name: Cupriavidus pauculus (Vandamme et al. 1999) Vandamme and Coenye 2004
  • synonyms

    @refsynonym
    20215Ralstonia paucula
    20215Wautersia paucula

@ref: 6891

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Cupriavidus

species: Cupriavidus pauculus

full scientific name: Cupriavidus pauculus (Vandamme et al. 1999) Vandamme and Coenye 2004

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6891CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
38594MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
6891positivegrowth37mesophilic
38594positivegrowth30mesophilic

Physiology and metabolism

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6891----+----------++++-+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45728---+----+------+---------------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
6891human endotracheaUSAUSANorth America
45728Human respiratory tract (endotrachea)USAUSANorth AmericaOregon

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Trachea

Safety information

risk assessment

  • @ref: 6891
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Cupriavidus pauculus strain CIP 105943 16S ribosomal RNA gene, partial sequence
  • accession: EU024165
  • length: 1315
  • database: ena
  • NCBI tax ID: 82633

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cupriavidus pauculus KF709GCA_000974605contigncbi82633
66792Cupriavidus pauculus FDAARGOS_664GCA_008693385completencbi82633
66792Cupriavidus pauculus FDAARGOS_614GCA_003854935completencbi82633
66792Cupriavidus pauculus CCUG 12507GCA_008801835contigncbi82633
66792Cupriavidus pauculus UM1GCA_002858765scaffoldncbi82633
66792Cupriavidus pauculus strain CCUG 1250782633.14wgspatric82633
66792Cupriavidus pauculus strain FDAARGOS_614 strain Not applicable82633.11completepatric82633
66792Cupriavidus pauculus strain FDAARGOS_664 strain Not applicable82633.13completepatric82633
66792Cupriavidus pauculus strain KF709 (=NBRC 110672)82633.5wgspatric82633
66792Cupriavidus pauculus strain UM182633.8patric82633

External links

@ref: 6891

culture collection no.: DSM 17313, CCM 4867, CCUG 12507, CDC E6793, CIP 105943, LMG 3244

straininfo link

@refpassport
20218http://www.straininfo.net/strains/620850
20218http://www.straininfo.net/strains/323206
20218http://www.straininfo.net/strains/52023
20218http://www.straininfo.net/strains/52024
20218http://www.straininfo.net/strains/154444
20218http://www.straininfo.net/strains/52021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6891Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17313)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17313
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38594Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18018
45728Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 12507)https://www.ccug.se/strain?id=12507
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)