Name: Paraburkholderia phymatum 815
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1960

Type strain:

Species: Paraburkholderia phymatum

Strain Designation: 815

Culture col. no.: DSM 17167, CCUG 47179, CIP 108236, LMG 21445, STM 815

Strain history: CIP <- 2004, CCUG <- 2002, LMG <- C. Boivin, LSTM, Montpellier, France: strain 815

NCBI tax ID(s): 148447 (species)

SI-ID 94680

LMG 21445, CCUG 47179, DSM 17167, CIP 108236

Other strains from Paraburkholderia phymatum

P. phymatum SF008543(FSU),

Section

Paraburkholderia phymatum 815 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodule of Machaerium lunatum.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia phymatum**
	Full Scientific Name (LPSN)	Paraburkholderia phymatum (Vandamme et al. 2003) Sawana et al. 2015

Synonym

Burkholderia phymatum

Information on morphological and physiological properties Morphology

[Ref.: #121817]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.877

[Ref.: #121817]	Cell shape	oval-shaped

[Ref.: #121817]	Motility	no

[Ref.: #6802]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6802]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6802]

Culture medium growth

[Ref.: #6802]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6802]

Culture medium composition

expand / minimize

[Ref.: #6802]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6802]

Culture medium growth

[Ref.: #6802]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6802]

Culture medium composition

expand / minimize

[Ref.: #41976]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41976]

Culture medium growth

[Ref.: #41976]

Culture medium composition

expand / minimize

[Ref.: #121817]

Culture medium

CIP Medium 72

[Ref.: #121817]

Culture medium growth

[Ref.: #121817]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6802]		growth	28 °C
[Ref.: #41976]		growth	30 °C
[Ref.: #57560]		growth	30 °C
[Ref.: #121817]		growth	10-37 °C
[Ref.: #121817]	no	growth	5 °C
[Ref.: #121817]	no	growth	41 °C

[Ref.: #6802]	Temperature range	mesophilic
[Ref.: #41976]	Temperature range	mesophilic
[Ref.: #57560]	Temperature range	mesophilic
[Ref.: #121817]	Temperature range	psychrophilic
[Ref.: #121817]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57560]	Oxygen tolerance	aerobe
[Ref.: #121817]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.966

	Salt	Tested relation		Salt conc.
[Ref.: #121817]	NaCl		growth	0-6	%
[Ref.: #121817]	NaCl	no	growth	8	%
[Ref.: #121817]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #121817]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #121817]	nitrate ChEBI	+	reduction
[Ref.: #121817]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #121817]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121817]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #121817]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121817]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121817]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #121817]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121817]	caseinase	+	3.4.21.50
[Ref.: #6802]	catalase	+	1.11.1.6
[Ref.: #121817]	catalase	+	1.11.1.6
[Ref.: #6802]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #121817]	DNase	-
[Ref.: #121817]	gelatinase	+/-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #121817]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121817]	lipase	+
[Ref.: #121817]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121817]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121817]	oxidase	+
[Ref.: #121817]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121817]	tryptophan deaminase	-
[Ref.: #121817]	tween esterase	+
[Ref.: #121817]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6802]	23778	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+	+	-
[Ref.: #6802]	23777	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+/-	+	+
[Ref.: #6802]	23776	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+	+	+
[Ref.: #6802]	23775	+	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+	+	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121817]	2663	not determinedn.d.	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+	+	+	-	-	+	+	+	-	-	+	+	-	-	-	-	-	+	+	-	-	-	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	-	+	+	-	+	-	+	-	+	-	+	+	+	-	+	+	-	-	-	-	-	+	-	+	+	+	+	+	+	-	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #6802]	13993	-	+	+/-	+/-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-
[Ref.: #121817]	11012	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6802]	Sample type/isolated from	root nodule of Machaerium lunatum
[Ref.: #6802]	Host species	Machaerium lunatum
[Ref.: #6802]	Country	French Guiana
[Ref.: #6802]	Country ISO 3 Code	FRA
[Ref.: #6802]	Continent	Middle and South America

[Ref.: #57560]	Sample type/isolated from	Root nodule of Machaerium lunatum
[Ref.: #57560]	Country	French Guiana
[Ref.: #57560]	Country ISO 3 Code	FRA
[Ref.: #57560]	Continent	Middle and South America

[Ref.: #121817]	Sample type/isolated from	Plant, Root nodule of Machaerium lunatum
[Ref.: #121817]	Geographic location (country and/or sea, region)	Guyana
[Ref.: #121817]	Country	France
[Ref.: #121817]	Country ISO 3 Code	FRA
[Ref.: #121817]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6802]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121817]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6802]	Burkholderia sp. STM815 partial 16S rRNA gene, strain STM815	AJ302312	1435	ENA	391038 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia phymatum STM815 LMG 21445	GCA_902833665	scaffold	GenBank	391038 tax ID	*
[Ref.: #66792]	Paraburkholderia phymatum STM815 strain LMG 21445	391038.42	wgs	PATRIC	391038 tax ID	*

[Ref.: #6802]

GC-content

62.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraburkholderia phymatum STM815 strain LMG 21445 PATRIC: 391038.42
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia phymatum STM815 LMG 21445 NCBI: GCA_902833665.1
[Ref.: #69480]	flagellated	no	83.379	no
[Ref.: #69480]	gram-positive	no	98.231	no
[Ref.: #69480]	anaerobic	no	98.586	yes
[Ref.: #69480]	aerobic	yes	87.732	no
[Ref.: #69480]	halophile	no	95.464	no
[Ref.: #69480]	spore-forming	no	93.309	no
[Ref.: #69480]	thermophile	no	99.63	yes
[Ref.: #69480]	glucose-util	yes	90.577	yes
[Ref.: #69480]	motile	yes	87.677	no
[Ref.: #69480]	glucose-ferment	no	88.006	no

Availability in culture collections External links

[Ref.: #6802]

Culture collection no.

DSM 17167, CCUG 47179, CIP 108236, LMG 21445, STM 815

[Ref.: #71605]

SI-ID 94680

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Paraburkholderia phymatum Homocitrate Synthase NifV Plays a Key Role for Nitrogenase Activity during Symbiosis with Papilionoids and in Free-Living Growth Conditions.	Belles-Sancho P, Lardi M, Liu Y, Hug S, Pinto-Carbo MA, Zamboni N, Pessi G	Cells	10.3390/cells10040952	2021	*
Metabolism	Linkage of the Nit1C gene cluster to bacterial cyanide assimilation as a nitrogen source.	Jones LB, Ghosh P, Lee JH, Chou CN, Kunz DA	Microbiology (Reading)	10.1099/mic.0.000668	2018	*
Metabolism	Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum sigma(54) During Symbiosis with Phaseolus vulgaris.	Lardi M, Liu Y, Giudice G, Ahrens CH, Zamboni N, Pessi G	Int J Mol Sci	10.3390/ijms19041049	2018	*
Metabolism	Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history.	Klonowska A, Melkonian R, Miche L, Tisseyre P, Moulin L	BMC Genomics	10.1186/s12864-018-4487-2	2018	*
Metabolism	Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis.	Esmaeel Q, Pupin M, Kieu NP, Chataigne G, Bechet M, Deravel J, Krier F, Hofte M, Jacques P, Leclere V	Microbiologyopen	10.1002/mbo3.347	2016	*
Genetics	Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species.	Moulin L, Klonowska A, Caroline B, Booth K, Vriezen JA, Melkonian R, James EK, Young JP, Bena G, Hauser L, Land M, Kyrpides N, Bruce D, Chain P, Copeland A, Pitluck S, Woyke T, Lizotte-Waniewski M, Bristow J, Riley M	Stand Genomic Sci	10.4056/sigs.4861021	2014	*
Genetics	Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster.	Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar EJ, Halliday N, James EK, Camara M, Venturi V	Appl Environ Microbiol	10.1128/AEM.00635-13	2013	*
Metabolism	Enhanced degradation of haloacid by heterologous expression in related Burkholderia species.	Su X, Deng L, Kong KF, Tsang JS	Biotechnol Bioeng	10.1002/bit.24917	2013	*
Metabolism	Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica.	Chen WM, Prell J, James EK, Sheu DS, Sheu SY	Microbiology (Reading)	10.1099/mic.0.058370-0	2012	*
Phylogeny	Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp.	Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, Dos Reis Junior FB, Melkonian R, Moulin L, James EK, Sprent JI, Young JPW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.039859-0	2012	*
Metabolism	Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on symbiotic Burkholderia phymatum.	Chen WM, Prell J, James EK, Sheu DS, Sheu SY	Microbiology (Reading)	10.1099/mic.0.055095-0	2012	*
Metabolism	Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil.	Dos Reis FB Jr, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, de Fatima Loureiro M, de Queiroz LP, Scotti MR, Chen WM, Noren A, Rubio MC, de Faria SM, Bontemps C, Goi SR, Young JPW, Sprent JI, James EK	New Phytol	10.1111/j.1469-8137.2010.03267.x	2010	*
Phylogeny	Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov.	Anandham R, Indira Gandhi P, Kwon SW, Sa TM, Kim YK, Jee HJ	Arch Microbiol	10.1007/s00203-009-0517-4	2009	*
Phylogeny	Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta.	Elliott GN, Chen WM, Chou JH, Wang HC, Sheu SY, Perin L, Reis VM, Moulin L, Simon MF, Bontemps C, Sutherland JM, Bessi R, de Faria SM, Trinick MJ, Prescott AR, Sprent JI, James EK	New Phytol	10.1111/j.1469-8137.2006.01894.x	2007	*
Phylogeny	Burkholderia terrae sp. nov., isolated from a forest soil.	Yang HC, Im WT, Kim KK, An DS, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.63968-0	2006	*
Phylogeny	Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America.	Chen WM, de Faria SM, Straliotto R, Pitard RM, Simoes-Araujo JL, Chou JH, Chou YJ, Barrios E, Prescott AR, Elliott GN, Sprent JI, Young JP, James EK	Appl Environ Microbiol	10.1128/AEM.71.11.7461-7471.2005	2005	*
Phylogeny	Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes.	Vandamme P, Goris J, Chen WM, de Vos P, Willems A	Syst Appl Microbiol	10.1078/07232020260517634	2002	*
	Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction.	Hug S, Liu Y, Heiniger B, Bailly A, Ahrens CH, Eberl L, Pessi G	Front Plant Sci	10.3389/fpls.2021.699590	2021	*
	Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA.	Belles-Sancho P, Lardi M, Liu Y, Eberl L, Zamboni N, Bailly A, Pessi G	Metabolites	10.3390/metabo11070455	2021	*
	A novel function of the key nitrogen-fixation activator NifA in beta-rhizobia: Repression of bacterial auxin synthesis during symbiosis.	Belles-Sancho P, Liu Y, Heiniger B, von Salis E, Eberl L, Ahrens CH, Zamboni N, Bailly A, Pessi G	Front Plant Sci	10.3389/fpls.2022.991548	2022	*

References

#6802

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17167

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41976 ; Curators of the CIP;
#57560 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47179

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71605

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID94680.1 )

#121817 Collection of Institut Pasteur ; Curators of the CIP; CIP 108236
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paraburkholderia phymatum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Paraburkholderia phymatum STM815 strain LMG 21445

Paraburkholderia phymatum STM815 LMG 21445

Change proposal

Change proposal