Paraburkholderia sacchari (DSM 17165, CCT 6771, CCUG 46043)

Name: Paraburkholderia sacchari (DSM 17165, CCT 6771, CCUG 46043)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1959

Type strain

Strain Designation R-10964

Culture col. no. DSM 17165 CCT 6771 CCUG 46043 LMG 19450 R-10964 2 more

NCBI tax ID(s) 159450

Special Collections DSMZ CCUG CIP

History <- CCUG <- P. Vandamme, Ghent <- A. Steinbüchel, Univ. Münster <- L. da Silva, IPT Sao Paolo, Brazil <- J. Gomez, IPT, Brazil; IPT 101 2001, A. Steinbüchel, Munster, Germany: strain IPT 101 CIP <- 2001, A. Steinbüchel, Munster, Germany: strain IPT 101

Links

Paraburkholderia sacchari R-10964 is an aerobe, Gram-negative, motile bacterium that was isolated from soil of sugar cane plantation.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13280

LMG 19450,CCT 6771,CCUG 46043,KCTC 12954,DSM 17165,CIP 107211,NCPPB 4422

@ref 20215

Last LPSN update 2026-02-09 11:18:13

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia sacchari

Full scientific name Paraburkholderia sacchari (Brämer et al. 2001) Sawana et al. 2015

Synonyms (1)

Burkholderia sacchari

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122332	negative	rod-shaped
125438	negative		98
125439	negative		97.8

Pigmentation

@ref	Production	Name
122332		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6800	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41982	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122332	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6800	positive	growth	28
41982	positive	growth	30
57036	positive	growth	30
122332	positive	growth	30-41
122332	negative	growth	5
122332	negative	growth	10
122332	negative	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57036	aerobe
122332	facultative anaerobe
125439	aerobe	92.4

Spore formation

@ref	Spore formation	Confidence
125438		90.354
125439		98.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122332	NaCl	positive	growth	0-4 %
122332	NaCl		growth	6 %
122332	NaCl		growth	8 %
122332	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
122332	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
122332	17632 ChEBI	nitrate	+	reduction
122332	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
122332	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122332	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
122332	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122332	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122332	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
122332	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122332	caseinase	-	3.4.21.50
6800	catalase	+	1.11.1.6
122332	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
6800	cytochrome-c oxidase	+	1.9.3.1
122332	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122332	gelatinase	-
68369	gelatinase	-		from API 20NE
122332	lecithinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
122332	lipase	-
68382	lipase (C 14)	-		from API zym
122332	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122332	ornithine decarboxylase	+	4.1.1.17
122332	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122332	tryptophan deaminase	-
122332	tween esterase	+
122332	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	hydrogen production	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	photosynthesis	100	14 of 14
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	gallate degradation	100	5 of 5
66794	propanol degradation	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	cyanate degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	ceramide biosynthesis	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	pentose phosphate pathway	100	11 of 11
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	NAD metabolism	94.44	17 of 18
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	phenol degradation	90	18 of 20
66794	allantoin degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	arginine metabolism	87.5	21 of 24
66794	ketogluconate metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	vitamin B1 metabolism	84.62	11 of 13
66794	sulfate reduction	84.62	11 of 13
66794	alanine metabolism	82.76	24 of 29
66794	vitamin B6 metabolism	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	methionine metabolism	80.77	21 of 26
66794	methanofuran biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	myo-inositol biosynthesis	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	histidine metabolism	79.31	23 of 29
66794	tryptophan metabolism	78.95	30 of 38
66794	lysine metabolism	78.57	33 of 42
66794	heme metabolism	78.57	11 of 14
66794	cysteine metabolism	77.78	14 of 18
66794	urea cycle	76.92	10 of 13
66794	degradation of sugar acids	76	19 of 25
66794	biotin biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	metabolism of disaccharids	72.73	8 of 11
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	oxidative phosphorylation	70.33	64 of 91
66794	pyrimidine metabolism	68.89	31 of 45
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	sulfoquinovose degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	methanogenesis from CO2	66.67	8 of 12
66794	d-mannose degradation	66.67	6 of 9
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	lipoate biosynthesis	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	coenzyme M biosynthesis	60	6 of 10
66794	nitrate assimilation	55.56	5 of 9
66794	phenylmercury acetate degradation	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	polyamine pathway	47.83	11 of 23
66794	cholesterol biosynthesis	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	d-xylose degradation	45.45	5 of 11
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	creatinine degradation	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	degradation of hexoses	38.89	7 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	chlorophyll metabolism	27.78	5 of 18
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	daunorubicin biosynthesis	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122332	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6800	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	+	+	+
6800	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	+	+	+
6800	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	+	+	-
6800	+	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122332	not determinedn.d.	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	-	-	-	-	+	+	+	-	-	+	+	-	+	-	-	-	+	+	+	-	-	+	+	-	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	-	-	-	+	-	+	-	+	-	+	-	-	-	+	+	-	-	+	-	-	+	-	+	+	+	+	-	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Plantation
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
6800	soil of sugar cane plantation	Brazil	BRA	Middle and South America
57036	Soil,sugar cane plantation	Brazil	BRA	Middle and South America
122332	Environment, Soil	Brazil	BRA	Middle and South America	1996

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6800	1	Risk group (German classification) According to TRBA 466
122332	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM94938v2 assembly for Pseudomonas sp. LFM046	scaffold	GCA_000949385	1608357.5	2651869743	1608357	76.99
66792	ASM78543v2 assembly for Paraburkholderia sacchari LMG 19450	contig	GCA_000785435	159450.116	2627854119	159450	74.87
66792	ASM90283371v1 assembly for Paraburkholderia sacchari LMG 19450	scaffold	GCA_902833715	159450.111		159450	68.82
66792	Burkholderia sacchari LMG 19450	contig		159450.34		159450	56.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Burkholderia sacchari strain LMG 19450 16S ribosomal RNA gene, partial sequence	HQ849100	1124		159450
6800	Burkholderia sacchari 16S ribosomal RNA gene, partial sequence	AF263278	1523		159450

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paraburkholderia sacchari LMG 19450
NCBI: GCA_902833715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.20	no
125439	motility	BacteriaNetⓘ	yes	74.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia sacchari LMG 19450
NCBI: GCA_902833715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	94.64	no
125438	aerobic	aerobicⓘ	yes	89.84	no
125438	spore-forming	spore-formingⓘ	no	90.35	no
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	81.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Production and characterization of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymers from a pre- fermented hardwood hydrolysate.	Blunt W, Shah P, Vasquez V, Ye M, Doyle C, Liu Y, Saeidlou S, Monteil-Rivera F.	Bioprocess Biosyst Eng	10.1007/s00449-025-03203-8	2025
	Biotransformation of d-Xylose-Rich Rice Husk Hydrolysate by a Rice Paddy Soil Bacterium, Priestia sp. Strain JY310, to Low Molecular Weight Poly(3-hydroxybutyrate).	Lee JY, Kim MH, Kim JS, Yun BR, Kim DY, Chung CW.	Biomolecules	10.3390/biom13010131	2023
	Biosynthesis and Properties of a P(3HB-co-3HV-co-4HV) Produced by Cupriavidus necator B-10646.	Zhila NO, Sapozhnikova KY, Kiselev EG, Nemtsev IV, Lukyanenko AV, Shishatskaya EI, Volova TG.	Polymers (Basel)	10.3390/polym14194226	2022
	Economic and environmental assessment of bacterial poly(3-hydroxybutyrate) production from the organic fraction of municipal solid waste.	Izaguirre JK, Baranano L, Castanon S, Santos JAL, Cesario MT, da Fonseca MMR, Alkorta I, Garbisu C.	Bioresour Bioprocess	10.1186/s40643-021-00392-4	2021
	Extraction of Polyhydroxyalkanoates from Purple Non-Sulfur Bacteria by Non-Chlorinated Solvents.	Filippi S, Cinelli P, Mezzetta A, Carlozzi P, Seggiani M.	Polymers (Basel)	10.3390/polym13234163	2021
	A sustainable synthesis of polyhydroxyalkanoate from stubble waste as a carbon source using Pseudomonas putida MTCC 2475.	Kukreti N, Kumar P, Kataria R.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1343579	2024
	Recent updates to microbial production and recovery of polyhydroxyalkanoates.	de Melo RN, de Souza Hassemer G, Steffens J, Junges A, Valduga E.	3 Biotech	10.1007/s13205-023-03633-9	2023
Genetics	Genome-Wide Metabolic Reconstruction of the Synthesis of Polyhydroxyalkanoates from Sugars and Fatty Acids by Burkholderia Sensu Lato Species.	Alvarez-Santullano N, Villegas P, Mardones MS, Duran RE, Donoso R, Gonzalez A, Sanhueza C, Navia R, Acevedo F, Perez-Pantoja D, Seeger M.	Microorganisms	10.3390/microorganisms9061290	2021
	Recent Advances in the Biosynthesis of Polyhydroxyalkanoates from Lignocellulosic Feedstocks.	Vigneswari S, Noor MSM, Amelia TSM, Balakrishnan K, Adnan A, Bhubalan K, Amirul AA, Ramakrishna S.	Life (Basel)	10.3390/life11080807	2021
	Emergent Approaches to Efficient and Sustainable Polyhydroxyalkanoate Production.	Bedade DK, Edson CB, Gross RA.	Molecules	10.3390/molecules26113463	2021
	Production of Polyhydroxyalkanoates Using Hydrolyzates of Spruce Sawdust: Comparison of Hydrolyzates Detoxification by Application of Overliming, Active Carbon, and Lignite.	Kucera D, Benesova P, Ladicky P, Pekar M, Sedlacek P, Obruca S.	Bioengineering (Basel)	10.3390/bioengineering4020053	2017
	PHA Production and PHA Synthases of the Halophilic Bacterium Halomonas sp. SF2003.	Thomas T, Sudesh K, Bazire A, Elain A, Tan HT, Lim H, Bruzaud S.	Bioengineering (Basel)	10.3390/bioengineering7010029	2020
	Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species.	Sawana A, Adeolu M, Gupta RS.	Front Genet	10.3389/fgene.2014.00429	2014
Genetics	Versatile sugar and valerate metabolic pathways in Paraburkholderia xenovorans LB400 enable tailored poly(3-hydroxybutyrate-co-3-hydroxyvalerate) production.	Sepulveda MI, Urtuvia V, Alvarez-Santullano N, Villegas P, Vasquez-Navarrete J, Saffirio V, Diaz-Barrera A, Gonzalez M, Gomez JGC, Mendez V, Seeger M.	Appl Microbiol Biotechnol	10.1007/s00253-025-13599-8	2025
	Increasing PHB production with an industrially scalable hardwood hydrolysate as a carbon source	Dietrich K, Oliveira-Filho ER, Dumont MJ, Gomez JGC, Taciro MK, Silva LFd, Orsat V, Rio LFD.	Industrial crops and products.		2020
	Regulation of tricarboxylate transport and metabolism in Acinetobacter baylyi ADP1.	Baugh AC, Defalco JB, Duscent-Maitland CV, Tumen-Velasquez MP, Laniohan NS, Figatner K, Hoover TR, Karls AC, Elliott KT, Neidle EL.	Appl Environ Microbiol	10.1128/aem.02111-23	2024
	Application of qPCR assays based on haloacids transporter gene dehp2 for discrimination of Burkholderia and Paraburkholderia.	Su X, Shi Y, Li R, Lu ZN, Zou X, Wu JX, Han ZG.	BMC Microbiol	10.1186/s12866-019-1411-0	2019
Metabolism	Engineering xylose metabolism for production of polyhydroxybutyrate in the non-model bacterium Burkholderia sacchari.	Guaman LP, Barba-Ostria C, Zhang F, Oliveira-Filho ER, Gomez JGC, Silva LF.	Microb Cell Fact	10.1186/s12934-018-0924-9	2018
	Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery.	Mullins AJ, Jones C, Bull MJ, Webster G, Parkhill J, Connor TR, Murray JAH, Challis GL, Mahenthiralingam E.	Microbiol Resour Announc	10.1128/mra.00485-20	2020
	Cultivation of Cupriavidus necatorstrains on hydrolyzed lignocellulosic feedstocks widely available in Europe.	Alhafiz HA, Longus K, Verlinden RAJ, Lambauer V, Kruschitz A, Kratzer R.	Biotechnol Rep (Amst)	10.1016/j.btre.2025.e00899	2025
	Utilization of Sugarcane Bagasse by Halogeometricum borinquense Strain E3 for Biosynthesis of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate).	Salgaonkar BB, Braganca JM.	Bioengineering (Basel)	10.3390/bioengineering4020050	2017
Biotechnology	Use of agro-industrial residue from the canned pineapple industry for polyhydroxybutyrate production by Cupriavidus necator strain A-04.	Sukruansuwan V, Napathorn SC.	Biotechnol Biofuels	10.1186/s13068-018-1207-8	2018
	A New Wave of Industrialization of PHA Biopolyesters.	Koller M, Mukherjee A.	Bioengineering (Basel)	10.3390/bioengineering9020074	2022
Biotechnology	Engineering Burkholderia sacchari to enhance poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) [P(3HB-co-3HHx)] production from xylose and hexanoate.	Oliveira-Filho ER, de Macedo MA, Lemos ACC, Adams F, Merkel OM, Taciro MK, Gomez JGC, Silva LF	Int J Biol Macromol	10.1016/j.ijbiomac.2022.06.024	2022
Metabolism	Fed-batch polyhydroxybutyrate production by Paraburkholderia sacchari from a ternary mixture of glucose, xylose and arabinose.	Li M, Wilkins MR	Bioprocess Biosyst Eng	10.1007/s00449-020-02434-1	2020
	Investigating Nutrient Limitation Role on Improvement of Growth and Poly(3-Hydroxybutyrate) Accumulation by Burkholderia sacchari LMG 19450 From Xylose as the Sole Carbon Source.	Oliveira-Filho ER, Silva JGP, de Macedo MA, Taciro MK, Gomez JGC, Silva LF	Front Bioeng Biotechnol	10.3389/fbioe.2019.00416	2020
	Upgrading the organic fraction of municipal solid waste to poly(3-hydroxybutyrate).	Izaguirre JK, da Fonseca MMR, Fernandes P, Villaran MC, Castanon S, Cesario MT	Bioresour Technol	10.1016/j.biortech.2019.121785	2019
Biotechnology	Optimization of polyhydroxybutyrate production by experimental design of combined ternary mixture (glucose, xylose and arabinose) and process variables (sugar concentration, molar C:N ratio).	Li M, Eskridge KM, Wilkins MR	Bioprocess Biosyst Eng	10.1007/s00449-019-02146-1	2019
Proteome	Burkholderia sacchari DSM 17165: A source of compositionally-tunable block-copolymeric short-chain poly(hydroxyalkanoates) from xylose and levulinic acid.	Ashby RD, Solaiman DKY, Nunez A, Strahan GD, Johnston DB	Bioresour Technol	10.1016/j.biortech.2017.12.045	2017
Metabolism	Model Study To Assess Softwood Hemicellulose Hydrolysates as the Carbon Source for PHB Production in Paraburkholderia sacchari IPT 101.	Dietrich K, Dumont MJ, Schwinghamer T, Orsat V, Del Rio LF	Biomacromolecules	10.1021/acs.biomac.7b01446	2017
	Fed-Batch Synthesis of Poly(3-Hydroxybutyrate) and Poly(3-Hydroxybutyrate-co-4-Hydroxybutyrate) from Sucrose and 4-Hydroxybutyrate Precursors by Burkholderia sacchari Strain DSM 17165.	Miranda De Sousa Dias M, Koller M, Puppi D, Morelli A, Chiellini F, Braunegg G	Bioengineering (Basel)	10.3390/bioengineering4020036	2017
Metabolism	Use of a mannitol rich ensiled grass press juice (EGPJ) as a sole carbon source for polyhydroxyalkanoates (PHAs) production through high cell density cultivation.	Cerrone F, Davis R, Kenny ST, Woods T, O'Donovan A, Gupta VK, Tuohy M, Babu RP, O'Kiely P, O'Connor K	Bioresour Technol	10.1016/j.biortech.2015.04.128	2015
Genetics	Draft Genome Sequence of the Polyhydroxyalkanoate-Producing Bacterium Burkholderia sacchari LMG 19450 Isolated from Brazilian Sugarcane Plantation Soil.	Alexandrino PM, Mendonca TT, Guaman Bautista LP, Cherix J, Lozano-Sakalauskas GC, Fujita A, Ramos Filho E, Long P, Padilla G, Taciro MK, Gomez JG, Silva LF	Genome Announc	10.1128/genomeA.00313-15	2015
Metabolism	Production of poly(3-hydroxybutyrate-co-4-hydroxybutyrate) by Burkholderia sacchari using wheat straw hydrolysates and gamma-butyrolactone.	Cesario MT, Raposo RS, M D de Almeida MC, van Keulen F, Ferreira BS, Telo JP, R da Fonseca MM	Int J Biol Macromol	10.1016/j.ijbiomac.2014.04.054	2014
Metabolism	Enhanced bioproduction of poly-3-hydroxybutyrate from wheat straw lignocellulosic hydrolysates.	Cesario MT, Raposo RS, de Almeida MC, van Keulen F, Ferreira BS, da Fonseca MM	N Biotechnol	10.1016/j.nbt.2013.10.004	2013
Enzymology	Cloning and overexpression of the xylose isomerase gene from Burkholderia sacchari and production of polyhydroxybutyrate from xylose.	Lopes MS, Gomez JG, Silva LF	Can J Microbiol	10.1139/w09-055	2009
Metabolism	Identification of the 2-methylcitrate pathway involved in the catabolism of propionate in the polyhydroxyalkanoate-producing strain Burkholderia sacchari IPT101(T) and analysis of a mutant accumulating a copolyester with higher 3-hydroxyvalerate content.	Bramer CO, Silva LF, Gomez JG, Priefert H, Steinbuchel A	Appl Environ Microbiol	10.1128/AEM.68.1.271-279.2002	2002
Phylogeny	Polyhydroxyalkanoate-accumulating bacterium isolated from soil of a sugar-cane plantation in Brazil.	Bramer CO, Vandamme P, da Silva LF, Gomez JG, Steinbuchel A	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1709	2001
Phylogeny	Paraburkholderia acidiphila sp. nov., Paraburkholderia acidisoli sp. nov. and Burkholderia guangdongensis sp. nov., isolated from forest soil, and reclassification of Burkholderia ultramafica as Paraburkholderia ultramafica comb. nov.	Gao ZH, Zhang QM, Lv YY, Wang YQ, Zhao BN, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004690	2021
Phylogeny	Paraburkholderia pallida sp. nov. and Paraburkholderia silviterrae sp. nov., isolated from forest soil.	Xiao SY, Gao ZH, Lin QH, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003681	2019
Phylogeny	Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula.	Jung MY, Kang MS, Lee KE, Lee EY, Park SJ	J Microbiol	10.1007/s12275-019-8500-5	2018
Phylogeny	Paraburkholderia caffeinitolerans sp. nov., a caffeine degrading species isolated from a tea plantation soil sample.	Gao ZQ, Zhao DY, Xu L, Zhao RT, Chen M, Zhang CZ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0749-7	2016
Phylogeny	Burkholderia humi sp. nov., isolated from peat soil.	Srinivasan S, Kim J, Kang SR, Jheong WH, Lee SS	Curr Microbiol	10.1007/s00284-012-0270-9	2012

References

#6800	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17165
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41982	; Curators of the CIP;
#57036	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46043
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#122332	Collection of Institut Pasteur ; Curators of the CIP; CIP 107211
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraburkholderia sacchari (DSM 17165, CCT 6771, CCUG 46043)

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