Strain identifier
BacDive ID: 1960
Type strain:
Species: Paraburkholderia phymatum
Strain Designation: 815
Strain history: CIP <- 2004, CCUG <- 2002, LMG <- C. Boivin, LSTM, Montpellier, France: strain 815
NCBI tax ID(s): 148447 (species)
General
@ref: 6802
BacDive-ID: 1960
DSM-Number: 17167
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Paraburkholderia phymatum 815 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodule of Machaerium lunatum.
NCBI tax id
- NCBI tax id: 148447
- Matching level: species
strain history
@ref | history |
---|---|
6802 | <- CCUG <- P. Vandamme, Ghent <- C. Boivin, Montpellier |
121817 | CIP <- 2004, CCUG <- 2002, LMG <- C. Boivin, LSTM, Montpellier, France: strain 815 |
doi: 10.13145/bacdive1960.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia phymatum
- full scientific name: Paraburkholderia phymatum (Vandamme et al. 2003) Sawana et al. 2015
synonyms
- @ref: 20215
- synonym: Burkholderia phymatum
@ref: 6802
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia phymatum
full scientific name: Paraburkholderia phymatum (Vandamme et al. 2003) Sawana et al. 2015
strain designation: 815
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.877 | ||
121817 | negative | oval-shaped | no |
colony morphology
- @ref: 6802
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6802 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
6802 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
41976 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
121817 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6802 | positive | growth | 28 | mesophilic |
41976 | positive | growth | 30 | mesophilic |
57560 | positive | growth | 30 | mesophilic |
121817 | positive | growth | 10-37 | |
121817 | no | growth | 5 | psychrophilic |
121817 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
57560 | aerobe |
121817 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.966 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
121817 | NaCl | positive | growth | 0-6 % |
121817 | NaCl | no | growth | 8 % |
121817 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
121817 | 4853 | esculin | - | hydrolysis |
121817 | 17632 | nitrate | + | reduction |
121817 | 16301 | nitrite | - | reduction |
121817 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 121817
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
121817 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
6802 | catalase | + | 1.11.1.6 |
6802 | cytochrome-c oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
121817 | oxidase | + | |
121817 | beta-galactosidase | + | 3.2.1.23 |
121817 | alcohol dehydrogenase | - | 1.1.1.1 |
121817 | gelatinase | +/- | |
121817 | amylase | - | |
121817 | DNase | - | |
121817 | caseinase | + | 3.4.21.50 |
121817 | catalase | + | 1.11.1.6 |
121817 | tween esterase | + | |
121817 | lecithinase | + | |
121817 | lipase | + | |
121817 | lysine decarboxylase | - | 4.1.1.18 |
121817 | ornithine decarboxylase | - | 4.1.1.17 |
121817 | protease | + | |
121817 | tryptophan deaminase | - | |
121817 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6802 | - | + | +/- | +/- | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
121817 | - | + | + | + | + | + | + | + | - | - | + | + | - | + | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6802 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | - | + | + | + | - |
6802 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | - | + | +/- | + | + |
6802 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | - | + | + | + | + |
6802 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | - | + | + | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121817 | + | + | + | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | + | + | - | + | + | + | - | - | + | + | + | - | - | + | + | - | - | - | - | - | + | + | - | - | - | + | + | + | + | + | + | + | + | + | - | - | + | + | + | + | + | + | - | + | + | - | + | - | + | - | + | - | + | + | + | - | + | + | - | - | - | - | - | + | - | + | + | + | + | + | + | - | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent | geographic location |
---|---|---|---|---|---|---|
6802 | root nodule of Machaerium lunatum | Machaerium lunatum | French Guiana | FRA | Middle and South America | |
57560 | Root nodule of Machaerium lunatum | French Guiana | FRA | Middle and South America | ||
121817 | Plant, Root nodule of Machaerium lunatum | France | FRA | Europe | Guyana |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Shrub (Scrub) |
#Host Body-Site | #Plant | #Root nodule |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6802 | 1 | Risk group (German classification) |
121817 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6802
- description: Burkholderia sp. STM815 partial 16S rRNA gene, strain STM815
- accession: AJ302312
- length: 1435
- database: ena
- NCBI tax ID: 391038
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paraburkholderia phymatum STM815 LMG 21445 | GCA_902833665 | scaffold | ncbi | 391038 |
66792 | Paraburkholderia phymatum STM815 strain LMG 21445 | 391038.42 | wgs | patric | 391038 |
GC content
- @ref: 6802
- GC-content: 62.1
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 83.379 | no |
gram-positive | no | 98.231 | no |
anaerobic | no | 98.586 | yes |
aerobic | yes | 87.732 | no |
halophile | no | 95.464 | no |
spore-forming | no | 93.309 | no |
thermophile | no | 99.63 | yes |
glucose-util | yes | 90.577 | yes |
motile | yes | 87.677 | no |
glucose-ferment | no | 88.006 | no |
External links
@ref: 6802
culture collection no.: DSM 17167, CCUG 47179, CIP 108236, LMG 21445, STM 815
straininfo link
- @ref: 71605
- straininfo: 94680
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12583710 | Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., nodulate the roots of tropical legumes. | Vandamme P, Goris J, Chen WM, de Vos P, Willems A | Syst Appl Microbiol | 10.1078/07232020260517634 | 2002 | Base Sequence, Burkholderia/*classification/cytology/genetics/isolation & purification, Fabaceae/*microbiology, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, Plant Roots/metabolism/microbiology, RNA, Ribosomal, 16S, Soil Microbiology, Tropical Climate | Genetics |
Phylogeny | 16269788 | Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South America. | Chen WM, de Faria SM, Straliotto R, Pitard RM, Simoes-Araujo JL, Chou JH, Chou YJ, Barrios E, Prescott AR, Elliott GN, Sprent JI, Young JP, James EK | Appl Environ Microbiol | 10.1128/AEM.71.11.7461-7471.2005 | 2005 | Acyltransferases/genetics, Bacterial Proteins/genetics, Base Sequence, Brazil, Burkholderia/*classification/growth & development, Mimosa/*microbiology, Molecular Sequence Data, *Nitrogen Fixation, Oxidoreductases/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNA, South America, *Symbiosis, Venezuela | Genetics |
Phylogeny | 16449457 | Burkholderia terrae sp. nov., isolated from a forest soil. | Yang HC, Im WT, Kim KK, An DS, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.63968-0 | 2006 | Bacterial Typing Techniques, Burkholderia/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/*microbiology | Genetics |
Phylogeny | 17176403 | Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta. | Elliott GN, Chen WM, Chou JH, Wang HC, Sheu SY, Perin L, Reis VM, Moulin L, Simon MF, Bontemps C, Sutherland JM, Bessi R, de Faria SM, Trinick MJ, Prescott AR, Sprent JI, James EK | New Phytol | 10.1111/j.1469-8137.2006.01894.x | 2007 | Bacterial Proteins/classification/genetics, Bacteriological Techniques, Burkholderia/genetics/isolation & purification/*metabolism, Cupriavidus/genetics/isolation & purification/metabolism, DNA, Ribosomal/chemistry/classification, Fabaceae/microbiology, Green Fluorescent Proteins/analysis, Mimosa/*microbiology, Nitrogenase/metabolism, Phylogeny, Root Nodules, Plant/growth & development/metabolism/microbiology, Species Specificity, *Symbiosis | Metabolism |
Phylogeny | 19841903 | Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov. | Anandham R, Indira Gandhi P, Kwon SW, Sa TM, Kim YK, Jee HJ | Arch Microbiol | 10.1007/s00203-009-0517-4 | 2009 | Burkholderia/*classification/genetics/growth & development/*metabolism, Chemoautotrophic Growth/*physiology, DNA, Bacterial/chemistry/genetics, Nucleic Acid Hybridization, Oxidation-Reduction, Phenotype, Phylogeny, Soil Microbiology, Thiosulfates/*metabolism | Metabolism |
Metabolism | 20456044 | Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. | Dos Reis FB Jr, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, de Fatima Loureiro M, de Queiroz LP, Scotti MR, Chen WM, Noren A, Rubio MC, de Faria SM, Bontemps C, Goi SR, Young JPW, Sprent JI, James EK | New Phytol | 10.1111/j.1469-8137.2010.03267.x | 2010 | Acetylene/metabolism, Blotting, Western, Brazil, *Ecosystem, Geography, Mimosa/cytology/microbiology/*physiology/ultrastructure, Nitrogen Fixation/*physiology, Nitrogen Isotopes, Oxidation-Reduction, Oxidoreductases/metabolism, Plant Root Nodulation/*physiology, Rhizobium/physiology, Root Nodules, Plant/cytology/enzymology/microbiology/ultrastructure, Symbiosis | Enzymology |
Metabolism | 22282515 | Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on symbiotic Burkholderia phymatum. | Chen WM, Prell J, James EK, Sheu DS, Sheu SY | Microbiology (Reading) | 10.1099/mic.0.055095-0 | 2012 | Bacterial Proteins/genetics/metabolism, Burkholderia/*enzymology/genetics, Carbohydrate Metabolism, Cloning, Molecular, Fructose-Bisphosphatase/genetics/*metabolism, Genetic Complementation Test, Mimosa/*microbiology, Mutagenesis, Nitrogen Fixation, Phosphoglycerate Mutase/genetics/*metabolism, Plant Root Nodulation, Plant Roots/microbiology, *Symbiosis | Enzymology |
Phylogeny | 22467155 | Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. | Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, Dos Reis Junior FB, Melkonian R, Moulin L, James EK, Sprent JI, Young JPW, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.039859-0 | 2012 | Bacterial Typing Techniques, Base Composition, Brazil, Burkholderia/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, Mimosa/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA | Genetics |
Metabolism | 22556357 | Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. | Chen WM, Prell J, James EK, Sheu DS, Sheu SY | Microbiology (Reading) | 10.1099/mic.0.058370-0 | 2012 | Amino Acids, Branched-Chain/*biosynthesis, Burkholderia/genetics/growth & development/metabolism/*physiology, Culture Media/chemistry, Cupriavidus/genetics/growth & development/metabolism/*physiology, DNA Transposable Elements, Gene Deletion, Genes, Bacterial, Genetic Complementation Test, Mimosa/*microbiology/*physiology, Mutagenesis, Insertional, *Symbiosis | Cultivation |
Metabolism | 23568428 | Enhanced degradation of haloacid by heterologous expression in related Burkholderia species. | Su X, Deng L, Kong KF, Tsang JS | Biotechnol Bioeng | 10.1002/bit.24917 | 2013 | Acetates/metabolism, Bacterial Proteins/genetics/*metabolism, Biodegradation, Environmental, *Burkholderia/enzymology/genetics/metabolism, Hydrolases/genetics/*metabolism, Metabolic Engineering/*methods, RNA, Messenger/analysis/genetics/metabolism, Substrate Specificity | Enzymology |
Genetics | 23686262 | Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. | Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar EJ, Halliday N, James EK, Camara M, Venturi V | Appl Environ Microbiol | 10.1128/AEM.00635-13 | 2013 | Acyl-Butyrolactones/metabolism, Burkholderia/*genetics/physiology, Chromatography, Liquid, *Genome, Bacterial, Oligonucleotide Array Sequence Analysis, Quorum Sensing, *Regulon, Reverse Transcriptase Polymerase Chain Reaction, Species Specificity, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry | Phylogeny |
Genetics | 25197461 | Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. | Moulin L, Klonowska A, Caroline B, Booth K, Vriezen JA, Melkonian R, James EK, Young JP, Bena G, Hauser L, Land M, Kyrpides N, Bruce D, Chain P, Copeland A, Pitluck S, Woyke T, Lizotte-Waniewski M, Bristow J, Riley M | Stand Genomic Sci | 10.4056/sigs.4861021 | 2014 | Pathogenicity | |
Metabolism | 27060604 | Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis. | Esmaeel Q, Pupin M, Kieu NP, Chataigne G, Bechet M, Deravel J, Krier F, Hofte M, Jacques P, Leclere V | Microbiologyopen | 10.1002/mbo3.347 | 2016 | Antifungal Agents/metabolism, Bacterial Proteins/biosynthesis, Base Sequence, Burkholderia pseudomallei/*genetics/*metabolism, DNA, Bacterial/genetics, Gene Expression Profiling, Genome, Bacterial/*genetics, Lipopeptides/*biosynthesis/chemistry, Peptide Synthases/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Siderophores/*biosynthesis/chemistry | Genetics |
Metabolism | 29378510 | Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history. | Klonowska A, Melkonian R, Miche L, Tisseyre P, Moulin L | BMC Genomics | 10.1186/s12864-018-4487-2 | 2018 | Burkholderia/*genetics/metabolism, Cupriavidus/*genetics/metabolism, Gene Expression Profiling, Genome, Bacterial, Microbial Interactions, Mimosa/*microbiology, Plant Root Nodulation/*genetics, Plant Roots/physiology, Rhizobium/*genetics/metabolism, Symbiosis/genetics | Genetics |
Metabolism | 29614780 | Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum sigma(54) During Symbiosis with Phaseolus vulgaris. | Lardi M, Liu Y, Giudice G, Ahrens CH, Zamboni N, Pessi G | Int J Mol Sci | 10.3390/ijms19041049 | 2018 | Gene Expression Regulation, Bacterial/genetics, Metabolomics/methods, Phaseolus/*metabolism/*microbiology, Promoter Regions, Genetic/genetics, Rhizobium/physiology, Root Nodules, Plant/metabolism/microbiology, Symbiosis/genetics/physiology, Transcriptome/*genetics | Genetics |
Metabolism | 29781800 | Linkage of the Nit1C gene cluster to bacterial cyanide assimilation as a nitrogen source. | Jones LB, Ghosh P, Lee JH, Chou CN, Kunz DA | Microbiology (Reading) | 10.1099/mic.0.000668 | 2018 | Aminohydrolases/*genetics/metabolism, Bacteria/*genetics/growth & development/*metabolism, Bacterial Proteins/*genetics/metabolism, Conserved Sequence, Cyanides/*metabolism, Evolution, Molecular, Gene Deletion, Genetic Linkage, Multigene Family/*genetics, Transcription, Genetic | |
Metabolism | 33924023 | Paraburkholderia phymatum Homocitrate Synthase NifV Plays a Key Role for Nitrogenase Activity during Symbiosis with Papilionoids and in Free-Living Growth Conditions. | Belles-Sancho P, Lardi M, Liu Y, Hug S, Pinto-Carbo MA, Zamboni N, Pessi G | Cells | 10.3390/cells10040952 | 2021 | Bacterial Proteins/*metabolism, Burkholderiaceae/*enzymology/genetics, Fabaceae/*microbiology, Genome, Bacterial, Green Fluorescent Proteins/metabolism, Host-Pathogen Interactions, Likelihood Functions, Metabolome, Nitrogenase/*metabolism, Oxo-Acid-Lyases/*metabolism, Phylogeny, Root Nodules, Plant/metabolism/microbiology, *Symbiosis | Genetics |
34357349 | Metabolomics and Dual RNA-Sequencing on Root Nodules Revealed New Cellular Functions Controlled by Paraburkholderia phymatum NifA. | Belles-Sancho P, Lardi M, Liu Y, Eberl L, Zamboni N, Bailly A, Pessi G | Metabolites | 10.3390/metabo11070455 | 2021 | |||
34394152 | Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction. | Hug S, Liu Y, Heiniger B, Bailly A, Ahrens CH, Eberl L, Pessi G | Front Plant Sci | 10.3389/fpls.2021.699590 | 2021 | |||
36247538 | A novel function of the key nitrogen-fixation activator NifA in beta-rhizobia: Repression of bacterial auxin synthesis during symbiosis. | Belles-Sancho P, Liu Y, Heiniger B, von Salis E, Eberl L, Ahrens CH, Zamboni N, Bailly A, Pessi G | Front Plant Sci | 10.3389/fpls.2022.991548 | 2022 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6802 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17167) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17167 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
41976 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5836 | ||
57560 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 47179) | https://www.ccug.se/strain?id=47179 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
71605 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID94680.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121817 | Curators of the CIP | Collection of Institut Pasteur (CIP 108236) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108236 |