Robbsia andropogonis PW 102 is an obligate aerobe, Gram-negative, motile plant pathogen that was isolated from Dianthus caryophyllus.
Gram-negative motile rod-shaped obligate aerobe plant pathogen 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Burkholderiaceae |
| Genus Robbsia |
| Species Robbsia andropogonis |
| Full scientific name Robbsia andropogonis (Smith 1911) Lopes-Santos et al. 2017 |
| Synonyms (6) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 41961 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 3748 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 3748 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 116379 | CIP Medium 72 | Medium recipe at CIP |
| 116379 | Oxygen toleranceobligate aerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 116379 | 16947 ChEBI | citrate | - | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | + | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 116379 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 116379 | 17632 ChEBI | nitrate | - | reduction | |
| 116379 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 116379 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | + | hydrolysis | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116379 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116379 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 116379 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 116379 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116379 | caseinase | - | 3.4.21.50 | |
| 116379 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 116379 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116379 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 116379 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 116379 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 116379 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116379 | ornithine decarboxylase | - | 4.1.1.17 | |
| 116379 | oxidase | - | ||
| 116379 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116379 | tryptophan deaminase | - | ||
| 116379 | tween esterase | - | ||
| 116379 | urease | + | 3.5.1.5 | |
| 68369 | urease | + | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | cyanate degradation | 100 | 3 of 3 | ||
| 66794 | propanol degradation | 100 | 7 of 7 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | quinate degradation | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | ||
| 66794 | phenol degradation | 90 | 18 of 20 | ||
| 66794 | 4-hydroxymandelate degradation | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | photosynthesis | 85.71 | 12 of 14 | ||
| 66794 | reductive acetyl coenzyme A pathway | 85.71 | 6 of 7 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | purine metabolism | 81.91 | 77 of 94 | ||
| 66794 | vitamin B6 metabolism | 81.82 | 9 of 11 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | 3-phenylpropionate degradation | 80 | 12 of 15 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | ||
| 66794 | threonine metabolism | 80 | 8 of 10 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | tetrahydrofolate metabolism | 78.57 | 11 of 14 | ||
| 66794 | chorismate metabolism | 77.78 | 7 of 9 | ||
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | ||
| 66794 | degradation of sugar acids | 76 | 19 of 25 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | glutamate and glutamine metabolism | 75 | 21 of 28 | ||
| 66794 | tryptophan metabolism | 73.68 | 28 of 38 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | methionine metabolism | 73.08 | 19 of 26 | ||
| 66794 | proline metabolism | 72.73 | 8 of 11 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | cysteine metabolism | 72.22 | 13 of 18 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | heme metabolism | 71.43 | 10 of 14 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | leucine metabolism | 69.23 | 9 of 13 | ||
| 66794 | non-pathway related | 68.42 | 26 of 38 | ||
| 66794 | degradation of pentoses | 67.86 | 19 of 28 | ||
| 66794 | vitamin B12 metabolism | 67.65 | 23 of 34 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | histidine metabolism | 65.52 | 19 of 29 | ||
| 66794 | lipid metabolism | 64.52 | 20 of 31 | ||
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | ||
| 66794 | oxidative phosphorylation | 62.64 | 57 of 91 | ||
| 66794 | androgen and estrogen metabolism | 62.5 | 10 of 16 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | lysine metabolism | 61.9 | 26 of 42 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | urea cycle | 61.54 | 8 of 13 | ||
| 66794 | sulfate reduction | 61.54 | 8 of 13 | ||
| 66794 | phenylacetate degradation (aerobic) | 60 | 3 of 5 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | starch degradation | 60 | 6 of 10 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 60 | 9 of 15 | ||
| 66794 | vitamin K metabolism | 60 | 3 of 5 | ||
| 66794 | arginine metabolism | 58.33 | 14 of 24 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 58.33 | 7 of 12 | ||
| 66794 | aspartate and asparagine metabolism | 55.56 | 5 of 9 | ||
| 66794 | allantoin degradation | 55.56 | 5 of 9 | ||
| 66794 | degradation of hexoses | 55.56 | 10 of 18 | ||
| 66794 | carotenoid biosynthesis | 54.55 | 12 of 22 | ||
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | glycolate and glyoxylate degradation | 50 | 3 of 6 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 50 | 5 of 10 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | resorcinol degradation | 50 | 1 of 2 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 47.06 | 8 of 17 | ||
| 66794 | metabolism of disaccharids | 45.45 | 5 of 11 | ||
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | factor 420 biosynthesis | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | glycogen metabolism | 40 | 2 of 5 | ||
| 66794 | O-antigen biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | arachidonic acid metabolism | 38.89 | 7 of 18 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | ||
| 66794 | carnitine metabolism | 37.5 | 3 of 8 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | vitamin E metabolism | 25 | 1 of 4 |
Global distribution of 16S sequence AB021422 (>99% sequence identity) for Burkholderiaceae from Microbeatlas ![]()
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Burkholderia andropogonis gene for 16S rRNA, strain: ATCC 19311 | AB021422 | 1449 | 28092 | ||
| 124043 | Paraburkholderia andropogonis strain NCPPB 968 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence. | KU507027 | 692 | 28092 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Genotypic and chemotaxonomic evidence for the reclassification of Pseudomonas woodsii (Smith 1911) Stevens 1925 as Burkholderia andropogonis (Smith 1911) Gillis et al. 1995. | Coenye T, Laevens S, Gillis M, Vandamme P | Int J Syst Evol Microbiol | 10.1099/00207713-51-1-183 | 2001 |
| #3748 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9884 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41961 | ; Curators of the CIP; |
| #46713 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17910 |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116379 | Collection of Institut Pasteur ; Curators of the CIP; CIP 107021 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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