Robbsia andropogonis (DSM 9511, ATCC 23061, CCUG 32772)

Name: Robbsia andropogonis (DSM 9511, ATCC 23061, CCUG 32772)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1935

Type strain

Culture col. no. DSM 9511 ATCC 23061 CCUG 32772 CFBP 2421 CIP 105771 9 more

NCBI tax ID(s) 28092

Special Collections DSMZ CCUG JCM KCTC CIP

Links

Robbsia andropogonis DSM 9511 is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Sorghum vulgare.

Gram-negative motile rod-shaped obligate aerobe mesophilic plant pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 3922

LMG 2129,ATCC 23061,ICMP 2807,JCM 10487,NCPPB 934,PDDCC 2807,CIP 105771,CCUG 32772,CFBP 2421,DSM 9511,KCTC 2963,CCUG 41876,BCRC 12861,CCRC 12861,KACC 10474,NRRL B-14296

@ref 20215

Last LPSN update 2025-12-16 09:47:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Robbsia

Species Robbsia andropogonis

Full scientific name Robbsia andropogonis (Smith 1911) Lopes-Santos et al. 2017

Synonyms (6)

Paraburkholderia andropogonis
Pseudomonas andropogonis
Burkholderia andropogonis
Pseudomonas woodsii
"Bacterium woodsii"
"Bacterium andropogoni"

BacDive ID	Other strains from **Robbsia andropogonis** (12)	Type strain
1936	R. andropogonis PW 102, 0153A2, DSM 9884, ATCC 19311, NCPPB ...
100222	R. andropogonis ST033341(HKI),
100223	R. andropogonis SF006120(FSU),
100224	R. andropogonis SF006047(FSU),
100225	R. andropogonis SF001573(FSU),
100226	R. andropogonis SF002329(FSU),
100227	R. andropogonis SF002331(FSU),
100228	R. andropogonis SF002395(FSU),
100229	R. andropogonis SF008705(FSU),
143231	R. andropogonis CCUG 17909, NCPPB 2441, LMG 1279
147063	R. andropogonis CCUG 32771, NCPPB 450, LMG 2126
157310	R. andropogonis IMI 347457

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116378	negative	rod-shaped
125438	negative		97.719
125439	negative		98

Pigmentation

@ref	Production	Name
116378		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3623	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41960	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116378	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3623	positive	growth	28	mesophilic
41960	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
116378	positive	growth	25-41
116378	negative	growth	5
116378	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116378	obligate aerobe
125439	aerobe	92.3

Spore formation

@ref	Spore formation	Confidence
125438		90.867
125439		98.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116378	NaCl	positive	growth	0-2 %
116378	NaCl		growth	4 %
116378	NaCl		growth	6 %
116378	NaCl		growth	8 %
116378	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
116378	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
116378	4853 ChEBI	esculin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116378	17632 ChEBI	nitrate	-	reduction
116378	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116378	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
116378	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116378	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116378	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116378	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
116378	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116378	caseinase	-	3.4.21.50
116378	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
116378	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116378	gelatinase	-
68369	gelatinase	-		from API 20NE
116378	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116378	lipase	-
68382	lipase (C 14)	-		from API zym
116378	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116378	ornithine decarboxylase	-	4.1.1.17
116378	oxidase	-
116378	protease	-
68382	trypsin	-	3.4.21.4	from API zym
116378	tryptophan deaminase	-
116378	tween esterase	-
116378	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	propanol degradation	100	7 of 7
66794	acetate fermentation	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	quinate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	phenol degradation	90	18 of 20
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	photosynthesis	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	purine metabolism	81.91	77 of 94
66794	vitamin B6 metabolism	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	3-phenylpropionate degradation	80	12 of 15
66794	myo-inositol biosynthesis	80	8 of 10
66794	3-chlorocatechol degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	chorismate metabolism	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	degradation of sugar acids	76	19 of 25
66794	ketogluconate metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	tryptophan metabolism	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	non-pathway related	68.42	26 of 38
66794	degradation of pentoses	67.86	19 of 28
66794	vitamin B12 metabolism	67.65	23 of 34
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	histidine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	tyrosine metabolism	64.29	9 of 14
66794	oxidative phosphorylation	62.64	57 of 91
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	starch degradation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	peptidoglycan biosynthesis	60	9 of 15
66794	vitamin K metabolism	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	allantoin degradation	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	carotenoid biosynthesis	54.55	12 of 22
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	resorcinol degradation	50	1 of 2
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	metabolism of disaccharids	45.45	5 of 11
66794	cholesterol biosynthesis	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	glycogen metabolism	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4

Fatty acid profile

Metadata FA analysis

@ref

65614

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	24.3	17.824
C16:1 ω7c	18.5	15.819
C16:0	14.2	16
C19:0 CYCLO ω8c	10.8	18.9
C17:0 CYCLO	6	16.888
C16:0 3OH	5.1	17.52
C16:0 2OH	4.9	17.233
C14:0	4.8	14
C16:1 2OH	3.6	17.047
C14:0 3OH/C16:1 ISO I	3.6	15.485
C18:1 2OH	1.6	19.088
Unidentified	0.7	18.834
C16:1 ω5c	0.5	15.908
Unidentified	0.5	18.066
Unidentified	0.4	19.596
Unidentified	0.3	17.984
C18:2 ω6,9c/C18:0 ANTE	0.2	17.724

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116378	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
3623	-	-	-	-	+	+	-	+	+	+	+	+	-	-	-	-	-	+	+/-	-	-
3623	-	-	-	-	-	-	-	+	+	+	+	+	-	-	-	-	-	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116378	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	+	+	-	+	-	-	-	+	+	-	-	-	+	+	+	-	-	+	+	+	-	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Isolation date
3623	Sorghum vulgare	Sorghum vulgare	USA	USA	North America
67770	Sorghum bicolor	Sorghum bicolor
116378	Sorghum vulgare		United States of America	USA	North America	1961

Taxonmaps

69479

Global distribution of 16S sequence JX986957 (>99% sequence identity) for Burkholderiaceae from Microbeatlas

Aquatic Samples	1003
Soil Samples	1091
Animal Samples	1710
Plant Samples	3269
Total Samples	7073

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
3623		1	Risk group (German classification) According to TRBA 466
116378		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM90283384v1 assembly for Robbsia andropogonis LMG 2129	scaffold	GCA_902833845	28092.8	8063489567	28092	58.61
67770	ASM97034v1 assembly for Robbsia andropogonis ICMP2807	contig	GCA_000970345	28092.6	2627853839	28092	18.94

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia andropogonis DNA for 16S ribosomal RNA, 23S ribosomal RNA, partial sequence	D87085	681	28092
3623	P.andropogonis 16S ribosomal RNA	X67037	1466	28092
3623	Burkholderia andropogonis 16S ribosomal RNA gene, partial sequence	JX986957	1483	28092
67770	Burkholderia andropogonis strain IBSBF199 16S ribosomal RNA gene, partial sequence	KM083264	1105	28092
124043	Burkholderia andropogonis strain LMG 2129 16S ribosomal RNA gene, partial sequence.	HQ849073	1124	28092
124043	Robbsia andropogonis strain ICMP 2807 16S ribosomal RNA gene, partial sequence.	MT759998	1354	28092
124043	Robbsia andropogonis strain ICMP 2807 16S ribosomal RNA gene, partial sequence.	MT758035	1354	28092

GC content

@ref	GC-content (mol%)	Method
3623	58.92	sequence analysis
67770	58.92	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Robbsia andropogonis LMG 2129
NCBI: GCA_902833845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.30	no
125439	motility	BacteriaNetⓘ	yes	82.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Robbsia andropogonis LMG 2129
NCBI: GCA_902833845.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.72	no
125438	anaerobic	anaerobicⓘ	no	97.26	no
125438	aerobic	aerobicⓘ	yes	86.97	no
125438	spore-forming	spore-formingⓘ	no	90.87	no
125438	thermophilic	thermophileⓘ	no	96.47	no
125438	flagellated	motile2+ⓘ	yes	83.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	List of new names and new combinations previously effectively, but not validly, published.	Oren A, Garrity GM.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002278	2017
	First Report of Bacterial Spot Caused by Robbsia andropogonis in Loropetalum chinense	Conner C, Khan A, Bocsanczy AM, Spakes-Richter B, Spakes-Richter B, Norman DJ.	Plant Dis	10.1094/pdis-11-18-1929-pdn	2019
	Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery.	Mullins AJ, Jones C, Bull MJ, Webster G, Parkhill J, Connor TR, Murray JAH, Challis GL, Mahenthiralingam E.	Microbiol Resour Announc	10.1128/mra.00485-20	2020
	First report of bacterial leaf spot disease on Pueraria montana var. thomsonii caused by Robbsia andropogonis in China.	Cui X, Cai Y, Chen R, Liu Q	Plant Dis	10.1094/PDIS-12-21-2848-PDN	2022
Genetics	Draft Genome Sequence of Burkholderia andropogonis Type Strain ICMP2807, Isolated from Sorghum bicolor.	Lopes-Santos L, Castro DB, Ottoboni LM, Park D, Weir BS, Destefano SA	Genome Announc	10.1128/genomeA.00455-15	2015
Phylogeny	Genotypic and chemotaxonomic evidence for the reclassification of Pseudomonas woodsii (Smith 1911) Stevens 1925 as Burkholderia andropogonis (Smith 1911) Gillis et al. 1995.	Coenye T, Laevens S, Gillis M, Vandamme P	Int J Syst Evol Microbiol	10.1099/00207713-51-1-183	2001
Phylogeny	Construction of species-specific primers for Pseudomonas andropogonis based on 16S rDNA sequences.	Bagsic RD, Fegan M, Li X, Hayward AC	Lett Appl Microbiol	10.1111/j.1472-765x.1995.tb01013.x	1995
	Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula).	Shi H, Ambika Manirajan B, Ratering S, Geissler-Plaum R, Schnell S.	Curr Microbiol	10.1007/s00284-023-03344-7	2023
Phylogeny	Pararobbsia silviterrae gen. nov., sp. nov., isolated from forest soil and reclassification of Burkholderia alpina as Pararobbsia alpina comb. nov.	Lin QH, Lv YY, Gao ZH, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003932	2020

References

#3623	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9511
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41960	; Curators of the CIP;
#65614	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32772
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116378	Collection of Institut Pasteur ; Curators of the CIP; CIP 105771
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Robbsia andropogonis (DSM 9511, ATCC 23061, CCUG 32772)

Name and taxonomic classification

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