Name: Burkholderia sp. SJ98
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1934

Type strain:

Species: Burkholderia sp.

Strain Designation: SJ98

Culture col. no.: DSM 23195, MTCC 10105, JCM 16861

Strain history: R. K. Jain strain SJ98.

NCBI tax ID(s): 36773 (species)

SI-ID 403441

DSM 23195

Other strains from Burkholderia sp.

B. sp. DSM 9242, IPT 64
B. sp. DSM 9243, IPT 77 B
B. sp. R-711, DSM 13785
B. sp. ICD, DSM 15090
B. sp. N-APS2, DSM 19529
B. sp. JS872, DSM 22944
B. sp. DSM 50401, ICPB 2436, NRRL B-1683
B. sp. BB1a, ID 99-544, DSM 28455, CN ...
B. sp. 597-05-1, ID 98-272, PB1, DSM 28456, ...
B. sp. A9, DSM 101989
B. sp. Leaf177, DSM 102584
B. sp. CCUG 18424
B. sp. CCUG 28388
B. sp. CCUG 30784
B. sp. CCUG 31959
B. sp. CCUG 32541
B. sp. CCUG 34407
B. sp. CCUG 34408
B. sp. CCUG 34409
B. sp. CCUG 34410
B. sp. CCUG 34412
B. sp. CCUG 34414
B. sp. CCUG 34418
B. sp. CCUG 35664
B. sp. CCUG 54996
B. sp. CCUG 57241
B. sp. CCUG 58370
B. sp. CCUG 59675
B. sp. CCUG 61816 Q
B. sp. MAK1, DSM 102049
B. sp. ST 111, DSM 106080
B. sp. JCM 15050
B. sp. JCM 18069, KEMC 7302-068
B. sp. JCM 20553, IAM 12403, NBRC 103046
B. sp. JCM 30421

Section

Burkholderia sp. SJ98 is a mesophilic bacterium that was isolated from soil from pesticide-contaminated site.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Burkholderia*
	Full Scientific Name (LPSN)	Burkholderia Yabuuchi et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #16746]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16746]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16746]

Culture medium growth

[Ref.: #16746]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16746]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16746]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #16746]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #16746]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #16746]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #16746]	23859	-	-	-	-	-	-	-	-	+	+	+	+	+	-	+	+	-	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16746]	Sample type/isolated from	soil from pesticide-contaminated site
[Ref.: #16746]	Geographic location (country and/or sea, region)	Assam
[Ref.: #16746]	Country	India
[Ref.: #16746]	Country ISO 3 Code	IND
[Ref.: #16746]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Pesticide contaminated soil from Assam agricultural fields
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ986324 (>99% sequence identity) for Burkholderia from Microbeatlas

Aquatic Samples	545
Soil Samples	6263
Animal Samples	1567
Plant Samples	3060
Total Samples	11435

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16746]	Burkholderia sp. SJ98 16S ribosomal RNA gene, partial sequence	DQ986324	1449	ENA	406819 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Burkholderia sp. SJ98	GCA_000256585	contig	GenBank	406819 tax ID
[Ref.: #66792]	Burkholderia sp. SJ98	406819.9	wgs	PATRIC	406819 tax ID	*
[Ref.: #66792]	Burkholderia sp. SJ98	2531839682	draft	JGI IMG/M	406819 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia sp. SJ98 PATRIC: 406819.9
[Ref.: #69480]	gram-positive	no	98.115	no
[Ref.: #69480]	anaerobic	no	98.399	no
[Ref.: #69480]	halophile	no	93.809	no
[Ref.: #69480]	spore-forming	no	92.465	no
[Ref.: #69480]	glucose-util	yes	88.727	yes
[Ref.: #69480]	aerobic	yes	89.775	no
[Ref.: #69480]	flagellated	no	82.064	no
[Ref.: #69480]	thermophile	no	99.336	no
[Ref.: #69480]	motile	yes	87.535	no
[Ref.: #69480]	glucose-ferment	no	90.462	yes

Availability in culture collections External links

[Ref.: #16746]

Culture collection no.

DSM 23195, MTCC 10105, JCM 16861

[Ref.: #71579]

SI-ID 403441

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The gene cluster for para-nitrophenol catabolism is responsible for 2-chloro-4-nitrophenol degradation in Burkholderia sp. strain SJ98.	Min J, Zhang JJ, Zhou NY	Appl Environ Microbiol	10.1128/AEM.02093-14	2014	*
Metabolism	Reductive dehalogenation mediated initiation of aerobic degradation of 2-chloro-4-nitrophenol (2C4NP) by Burkholderia sp. strain SJ98.	Pandey J, Heipieper HJ, Chauhan A, Arora PK, Prakash D, Takeo M, Jain RK	Appl Microbiol Biotechnol	10.1007/s00253-011-3254-y	2011	*

References

#16746

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23195

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71579

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403441.1 )

* These data were automatically processed and therefore are not curated

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