Paraburkholderia phenazinia (DSM 10684, ATCC 33666, BCRC 17398)

Name: Paraburkholderia phenazinia (DSM 10684, ATCC 33666, BCRC 17398)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1937

Type strain

Strain Designation 1A

Culture col. no. DSM 10684 ATCC 33666 BCRC 17398 CCUG 20836 CCUG 46044 7 more

NCBI tax ID(s) 60549

Special Collections DSMZ CCUG JCM CIP

History <- ATCC <- NCIMB <- J. M. Turner; 1A <- S. Bell LMG 2247 <-- NCIB 11027 <-- J. Turner A1. CIP <- 2002, CCUG <- 1990, LMG <- NCIB <- J.M. Turner: strain 1A

Links

Paraburkholderia phenazinia 1A is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4170

LMG 2247,CCUG 20836,JCM 10564,NCIB 11027,CCUG 46044,ATCC 33666,DSM 10684,NCIMB 11027,KCTC 2971,CIP 106502,CFBP 4793,BCRC 17398,CCRC 17398

@ref 20215

Last LPSN update 2026-02-09 11:18:13

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Paraburkholderia

Species Paraburkholderia phenazinia

Full scientific name Paraburkholderia phenazinia corrig. (Bell and Turner 1973) Sawana et al. 2015

Synonyms (5)

Paraburkholderia phenazinium
Pseudomonas phenazinium
Burkholderia phenazinia
Pseudomonas phenazinia
Burkholderia phenazinium

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121794	negative	rod-shaped
125438	negative			94

Colony morphology

4036

Incubation period1-2 days

Pigmentation

@ref	Production	Name
121794		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4036	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41969	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121794	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4036	positive	growth	30
41969	positive	growth	30
67770	positive	growth	28
121794	positive	growth	25-30
121794	negative	growth	5
121794	negative	growth	10
121794	negative	growth	37
121794	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121794	obligate aerobe
125439	obligate aerobe	95.7

Spore formation

@ref	Spore formation	Confidence
125439		95.6

Compound production

@ref	Compound
4036	phenazine
4036	iodinin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121794	NaCl	positive	growth	0 %
121794	NaCl		growth	2 %
121794	NaCl		growth	4 %
121794	NaCl		growth	6 %
121794	NaCl		growth	8 %
121794	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
121794	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
121794	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
121794	17632 ChEBI	nitrate	-	reduction
121794	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121794	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121794	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
121794	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121794	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121794	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
121794	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121794	caseinase	-	3.4.21.50
121794	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121794	DNase	+
68382	esterase (C 4)	+		from API zym
121794	gelatinase	-
68369	gelatinase	-		from API 20NE
121794	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121794	lipase	-
68382	lipase (C 14)	-		from API zym
121794	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121794	ornithine decarboxylase	-	4.1.1.17
121794	oxidase	-
121794	phenylalanine ammonia-lyase	-	4.3.1.24
121794	protease	-
68382	trypsin	-	3.4.21.4	from API zym
121794	tryptophan deaminase	-
121794	tween esterase	+
121794	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	propanol degradation	100	7 of 7
66794	4-hydroxymandelate degradation	100	9 of 9
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	3-chlorocatechol degradation	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	starch degradation	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	gallate degradation	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	octane oxidation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	acetate fermentation	100	4 of 4
66794	resorcinol degradation	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	ketogluconate metabolism	100	8 of 8
66794	quinate degradation	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	phenol degradation	90	18 of 20
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	vitamin B12 metabolism	85.29	29 of 34
66794	purine metabolism	85.11	80 of 94
66794	vitamin B1 metabolism	84.62	11 of 13
66794	pyrimidine metabolism	84.44	38 of 45
66794	degradation of sugar acids	84	21 of 25
66794	cysteine metabolism	83.33	15 of 18
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	alanine metabolism	82.76	24 of 29
66794	degradation of pentoses	82.14	23 of 28
66794	proline metabolism	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	tryptophan metabolism	81.58	31 of 38
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	myo-inositol biosynthesis	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-phenylpropionate degradation	80	12 of 15
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	arginine metabolism	79.17	19 of 24
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	lysine metabolism	78.57	33 of 42
66794	d-mannose degradation	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	androgen and estrogen metabolism	75	12 of 16
66794	isoleucine metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	d-xylose degradation	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	tyrosine metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	urea cycle	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	oxidative phosphorylation	69.23	63 of 91
66794	methane metabolism	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	IAA biosynthesis	66.67	2 of 3
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	glycine metabolism	60	6 of 10
66794	vitamin K metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	elloramycin biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	54.55	12 of 22
66794	cholesterol biosynthesis	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	bile acid biosynthesis, neutral pathway	52.94	9 of 17
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	carnitine metabolism	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	polyamine pathway	47.83	11 of 23
66794	dolichyl-diphosphooligosaccharide biosynthesis	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	enterobactin biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	catecholamine biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
65628	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-
121794	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
65628	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	+	+	+
4036	-	-	-	-	-	-	-	+	+	+/-	+	+	+	-	+	+/-	+/-	+	+	+	-
4036	-	-	-	-	-	-	-	+	+	-	+	+	+	-	+	-	-	+	-	-	+
4036	-	-	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	+	-	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121794	not determinedn.d.	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	+	+	+	-	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	+	-	+	+	-	+	+	+	+	+	-	+	-	-	-	-	-	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4036	soil	United Kingdom	GBR	Europe
67770	Soil
121794	Environment, Soil enriched with threonine

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4036	1	Risk group (German classification) According to TRBA 466
121794	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2651870170 annotated assembly for Paraburkholderia phenazinium LMG 2247	scaffold	GCA_900100735	60549.3	2651870170	60549	67.11

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Burkholderia phenazinium gene for 16S rRNA, strain: ATCC 33666	AB021394	1514	60549
20218	Burkholderia phenazinium strain LMG2247 16S ribosomal RNA gene, partial sequence; and tRNA-Ile and tRNA-Ala genes, complete sequence	EF552067	692	60549
20218	Burkholderia phenazinium strain LMG 2247 16S ribosomal RNA gene, partial sequence	HQ849093	1124	60549
4036	Burkholderia phenazinium 16S ribosomal RNA gene, partial sequence	U96936	1522	60549

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paraburkholderia phenazinium LMG 2247
NCBI: GCA_900100735

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.60	no
125439	motility	BacteriaNetⓘ	yes	63.20	no
125439	gram_stain	BacteriaNetⓘ	negative	88.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paraburkholderia phenazinium LMG 2247
NCBI: GCA_900100735.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.00	no
125438	anaerobic	anaerobicⓘ	no	96.92	yes
125438	aerobic	aerobicⓘ	yes	86.84	yes
125438	spore-forming	spore-formingⓘ	no	86.77	no
125438	thermophilic	thermophileⓘ	no	97.44	yes
125438	flagellated	motile2+ⓘ	yes	81.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraburkholderia telluris sp. nov., isolated from subtropical forest soil.	Xiao SY, Gao ZH, Yang Z, Bi JY, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003302	2019
Phylogeny	Paraburkholderiapallidirosea sp. nov., isolated from a monsoon evergreen broad-leaved forest soil.	Lv YY, Chen MH, Xia F, Wang J, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001387	2016
Phylogeny	Burkholderia soli sp. nov., isolated from soil cultivated with Korean ginseng.	Yoo SH, Kim BY, Weon HY, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64471-0	2007

References

#4036	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10684
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41969	; Curators of the CIP;
#65628	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46044
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#121794	Collection of Institut Pasteur ; Curators of the CIP; CIP 106502
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paraburkholderia phenazinia (DSM 10684, ATCC 33666, BCRC 17398)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900100735

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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