Name: Actinomyces oris W1053
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 191

Type strain:

Species: Actinomyces oris

Strain Designation: W1053

Culture col. no.: DSM 23056, ATCC 27044, CCUG 34288, WVU 474, JCM 16131

Strain history: CCUG 34288 <-- ATCC 27044 <-- L. K. Georg CDC W1053 <-- New York City Dept. Health, USA; WVU 474.

NCBI tax ID(s): 544580 (species)

SI-ID 38771

ATCC 27044, CCUG 34288, CCUG 35335, JCM 16131

Other strains from Actinomyces oris

A. oris Ny 334, DSM 43798
A. oris CIP 102340
A. oris 371, CIP 100655, ATCC 19246
A. oris CCUG 32894
A. oris CCUG 33516
A. oris CCUG 33589
A. oris CCUG 33707
A. oris CCUG 33708
A. oris CCUG 34209
A. oris CCUG 37856
A. oris CCUG 47315
A. oris CCUG 54866
A. oris CCUG 56934 A
A. oris CCUG 59654
A. oris CCUG 60842, JCM 8352, ATCC 43146
A. oris CCUG 62100
A. oris CCUG 64609
A. oris CCUG 64961
A. oris CCUG 65932
A. oris CCUG 66038
A. oris CCUG 67812
A. oris CCUG 67859 B
A. oris CCUG 68389
A. oris CCUG 68874
A. oris CCUG 69305
A. oris CCUG 70054

Section

Actinomyces oris W1053 is a mesophilic human pathogen that was isolated from human sputum.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Actinomyces*
	Species	**Actinomyces oris**
	Full Scientific Name (LPSN)	Actinomyces oris Henssge et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16679]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

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Culture medium growth

[Ref.: #16679]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16679]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16679]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #16679]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #16679]	13046	-	-	-	+	-	+	+	-	-	-	+	+	-	-	+	-	-	-	+	-	+	+	-	+	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16679]	Sample type/isolated from	human sputum

[Ref.: #67770]	Sample type/isolated from	Human sputum
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16679]	Pathogenicity (human)	yes
[Ref.: #16679]	Pathogenicity (animal)	yes
[Ref.: #16679]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16679]	Actinomyces oris strain ATCC 27044 16S ribosomal RNA gene, partial sequence	EU667403	481	ENA	544580 tax ID
[Ref.: #67770]	Actinomyces oris gene for 16S ribosomal RNA, partial sequence	AB545935	1517	ENA	544580 tax ID
[Ref.: #20218]	Actinomyces oris partial 16S rRNA gene, strain WVU 474	HF558379	1494	ENA	544580 tax ID	*
[Ref.: #20218]	Actinomyces viscosus 16S rRNA gene, strain CCUG 34288	AJ234053	1371	ENA	1656 tax ID	*
[Ref.: #20218]	Actinomyces oris strain ATCC 27044 16S ribososmal RNA gene, partial sequence	GQ421308	1475	ENA	544580 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomyces oris CCUG 34288	GCA_006546825	scaffold	GenBank	544580 tax ID
[Ref.: #66792]	Actinomyces oris strain CCUG 34288	544580.476	wgs	PATRIC	544580 tax ID	*
[Ref.: #66792]	Actinomyces oris strain FDAARGOS_1051	544580.571	complete	PATRIC	544580 tax ID	*

[Ref.: #16679]	GC-content	66.0 mol%
[Ref.: #67770]	GC-content	66 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomyces oris strain FDAARGOS_1051 strain Not applicable PATRIC: 544580.571
[Ref.: #69480]	gram-positive	yes	95.663	no
[Ref.: #69480]	anaerobic	no	83.93	no
[Ref.: #69480]	halophile	no	86.111	no
[Ref.: #69480]	spore-forming	no	94.512	no
[Ref.: #69480]	glucose-util	yes	88.905	no
[Ref.: #69480]	thermophile	no	95.258	no
[Ref.: #69480]	aerobic	no	90.309	no
[Ref.: #69480]	motile	no	91.511	no
[Ref.: #69480]	flagellated	no	97.172	no
[Ref.: #69480]	glucose-ferment	yes	79.084	no

Availability in culture collections External links

[Ref.: #16679]

Culture collection no.

DSM 23056, ATCC 27044, CCUG 34288, WVU 474, JCM 16131

[Ref.: #69873]

SI-ID 38771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pathogenicity of exopolysaccharide-producing Actinomyces oris isolated from an apical abscess lesion.	Yamane K, Nambu T, Yamanaka T, Ishihara K, Tatami T, Mashimo C, Walker CB, Leung KP, Fukushima H	Int Endod J	10.1111/j.1365-2591.2012.02099.x	2012	*
Phylogeny	Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963.	Henssge U, Do T, Radford DR, Gilbert SC, Clark D, Beighton D	Int J Syst Evol Microbiol	10.1099/ijs.0.000950-0	2009	*

References

#16679

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23056

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69873

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38771.1 )

* These data were automatically processed and therefore are not curated

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Actinomyces oris strain FDAARGOS_1051 strain Not applicable

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