Strain identifier

BacDive ID: 191

Type strain: Yes

Species: Actinomyces oris

Strain Designation: W1053

Culture col. no.: DSM 23056, ATCC 27044, CCUG 34288, W1053 , WVU 474

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General

@ref: 16679

BacDive-ID: 191

DSM-Number: 23056

keywords: mesophilic, Bacteria, 16S sequence, genome sequence, human pathogen

description: Actinomyces oris W1053 is a mesophilic human pathogen that was isolated from human sputum.

strain history: <- CCUG <- P. Pienta, ATCC <- L. K. Georg, CDC; W1053 <- New York City Dept. Hlth.; WVU 474

doi: 10.13145/bacdive191.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces oris
  • full scientific name: Actinomyces oris Henssge et al. 2009

@ref: 16679

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces oris

full scientific name: Actinomyces oris Henssge et al. 2009

strain designation: W1053

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
16679COLUMBIA BLOOD MEDIUM (DSMZ Medium 693), anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
16679PYG MEDIUM (MODIFIED) (DSMZ Medium 104), add 0.4% glucose, 0.1% cellobiose, 0.1% maltose, and 0.1% soluble starch, anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104.pdf

culture temp

  • @ref: 16679
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
16679---+-++---++--+---+-++-+-----

Isolation, sampling and environmental information

isolation

  • @ref: 16679
  • sample type: human sputum

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Oral cavity and Airways#Sputum

Safety information

risk assessment

  • @ref: 16679
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinomyces viscosus 16S rRNA gene, strain CCUG 34288AJ2340531371ena1656
20218Actinomyces oris strain ATCC 27044 16S ribososmal RNA gene, partial sequenceGQ4213081475ena544580
20218Actinomyces oris partial 16S rRNA gene, strain WVU 474HF5583791494ena544580
16679Actinomyces oris strain ATCC 27044 16S ribosomal RNA gene, partial sequenceEU667403481ena544580

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomyces oris T14VGCA_001553935completencbi544580
66792Actinomyces oris CCUG 34288GCA_006546825scaffoldncbi544580
66792Actinomyces oris UMB0183GCA_002847555scaffoldncbi544580
66792Actinomyces oris A7A-1GCA_001937715scaffoldncbi544580
66792Actinomyces oris G53EGCA_001937555scaffoldncbi544580
66792Actinomyces oris W11-1-1GCA_001937545scaffoldncbi544580
66792Actinomyces oris F4D1GCA_001929365scaffoldncbi544580
66792Actinomyces oris R11372GCA_001937505scaffoldncbi544580
66792Actinomyces oris P6NGCA_001937665scaffoldncbi544580
66792Actinomyces oris WE8B-23GCA_001937445scaffoldncbi544580
66792Actinomyces oris CCUG 34286GCA_001937485scaffoldncbi544580
66792Actinomyces oris R21091GCA_001937365scaffoldncbi544580
66792Actinomyces oris MMRCO6-1GCA_001937385scaffoldncbi544580
66792Actinomyces oris M48-1B-1GCA_001937415scaffoldncbi544580
66792Actinomyces oris S64CGCA_001929375scaffoldncbi544580
66792Actinomyces oris R23275GCA_001937535scaffoldncbi544580
66792Actinomyces oris F28B1GCA_001937425scaffoldncbi544580
66792Actinomyces oris A19A-1GCA_001937725scaffoldncbi544580
66792Actinomyces oris S24VGCA_001937655scaffoldncbi544580
66792Actinomyces oris MG-1GCA_001682715contigncbi544580
66792Actinomyces oris strain A19A-1544580.29wgspatric544580
66792Actinomyces oris strain A7A-1544580.30wgspatric544580
66792Actinomyces oris strain CCUG 34286544580.38wgspatric544580
66792Actinomyces oris strain CCUG 34288544580.476wgspatric544580
66792Actinomyces oris strain F28B1544580.40wgspatric544580
66792Actinomyces oris strain F4D1544580.45wgspatric544580
66792Actinomyces oris strain G53E544580.34wgspatric544580
66792Actinomyces oris strain M48-1B-1544580.41wgspatric544580
66792Actinomyces oris strain MG-1544580.11wgspatric544580
66792Actinomyces oris strain MMRCO6-1544580.42wgspatric544580
66792Actinomyces oris strain P6N544580.32wgspatric544580
66792Actinomyces oris strain R11372544580.37wgspatric544580
66792Actinomyces oris strain R21091544580.43wgspatric544580
66792Actinomyces oris strain R23275544580.36wgspatric544580
66792Actinomyces oris strain S24V544580.33wgspatric544580
66792Actinomyces oris strain S64C544580.44wgspatric544580
66792Actinomyces oris strain T14V544580.10completepatric544580
66792Actinomyces oris strain UMB0183544580.128patric544580
66792Actinomyces oris strain W11-1-1544580.35wgspatric544580
66792Actinomyces oris strain WE8B-23544580.39wgspatric544580

GC content

  • @ref: 16679
  • GC-content: 66.0

External links

@ref: 16679

culture collection no.: DSM 23056, ATCC 27044, CCUG 34288, W1053, WVU 474

straininfo link

@refpassport
20218http://www.straininfo.net/strains/104805
20218http://www.straininfo.net/strains/127628
20218http://www.straininfo.net/strains/127693
20218http://www.straininfo.net/strains/104807

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16679Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23056)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23056
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)