Name: Pseudochrobactrum lubricantis DSM 23782
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1903

Type strain:

Species: Pseudochrobactrum lubricantis

Culture col. no.: DSM 23782, CCM 7581, CCUG 56963, KSS 7.8

Strain history: <- CCUG <- P. Kämpfer, Univ. Giessen, Germany <- K. Nehrenheim, Germany

NCBI tax ID(s): 558172 (species)

SI-ID 396774

DSM 23782, CCUG 56963

Section

Pseudochrobactrum lubricantis DSM 23782 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water mixed metal working fluid.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Pseudochrobactrum*
	Species	**Pseudochrobactrum lubricantis**
	Full Scientific Name (LPSN)	Pseudochrobactrum lubricantis Kämpfer et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #23348]	Gram stain	negative

[Ref.: #23348]	Cell shape	rod-shaped

[Ref.: #23348]	Motility	no

[Ref.: #17372]	Type of hemolysis	gamma

[Ref.: #23348]	Colony size	2 mm
[Ref.: #23348]	Colony color	beige, translucent
[Ref.: #23348]	Colony shape	circular
[Ref.: #23348]	Incubation period	1 day

[Ref.: #61143]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17372]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17372]

Culture medium growth

[Ref.: #17372]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17372]

Culture medium composition

expand / minimize

[Ref.: #23348]

Culture medium

MacConkey

[Ref.: #23348]

Culture medium growth

[Ref.: #23348]

Culture medium

Nutrient agar (NA)

[Ref.: #23348]

Culture medium growth

[Ref.: #23348]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #23348]

Culture medium growth

[Ref.: #23348]

Culture medium

Tryptone soy agar

[Ref.: #23348]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #17372]			growth	30 °C
[Ref.: #61143]			growth	30 °C

[Ref.: #17372]	Temperature range	mesophilic
[Ref.: #61143]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61143]

Oxygen tolerance

aerobe

[Ref.: #23348]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23348]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23348]	beta-alanine ChEBI	+	assimilation
[Ref.: #23348]	cis-aconitate ChEBI	+/-	assimilation
[Ref.: #23348]	D-fructose ChEBI	+	assimilation
[Ref.: #23348]	D-galactose ChEBI	+	assimilation
[Ref.: #23348]	D-glucose ChEBI	+	assimilation
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #23348]	D-mannose ChEBI	+	assimilation
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #23348]	D-ribose ChEBI	+	assimilation
[Ref.: #23348]	D-xylose ChEBI	-	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #23348]	fumarate ChEBI	+	assimilation
[Ref.: #23348]	gamma-aminobutyric acid ChEBI	+	assimilation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #23348]	glutaric acid ChEBI	+	assimilation
[Ref.: #23348]	L-arabinose ChEBI	-	assimilation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23348]	L-aspartate ChEBI	+	assimilation
[Ref.: #23348]	L-histidine ChEBI	+	assimilation
[Ref.: #23348]	L-malate ChEBI	+	assimilation
[Ref.: #23348]	L-rhamnose ChEBI	-	assimilation
[Ref.: #23348]	lactate ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #23348]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #23348]	ornithine ChEBI	+	assimilation
[Ref.: #23348]	propionate ChEBI	+	assimilation
[Ref.: #23348]	pyruvate ChEBI	+	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #17372]	catalase	+	1.11.1.6
[Ref.: #23348]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #17372]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17372]	23873	-	-	-	-	+	-	-	-	+	-	+	-	+	-	-	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17372]	Sample type/isolated from	water mixed metal working fluid
[Ref.: #17372]	Country	Germany
[Ref.: #17372]	Country ISO 3 Code	DEU
[Ref.: #17372]	Continent	Europe

[Ref.: #61143]	Sample type/isolated from	Water mixed metal working fluid
[Ref.: #61143]	Sampling date	2000
[Ref.: #61143]	Country	Germany
[Ref.: #61143]	Country ISO 3 Code	DEU
[Ref.: #61143]	Continent	Europe

[Ref.: #23348]	Enrichment culture	tryptone soy agar
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FM209496 (>99% sequence identity) for Pseudochrobactrum from Microbeatlas

Aquatic Samples	437
Soil Samples	281
Animal Samples	988
Plant Samples	67
Total Samples	1773

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17372]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17372]	Pseudochrobactrum sp. KSS 7.8 partial 16S rRNA gene, type strain KSS 7.8T	FM209496	1401	ENA	558172 tax ID

Availability in culture collections External links

[Ref.: #17372]

Culture collection no.

DSM 23782, CCM 7581, CCUG 56963, KSS 7.8

[Ref.: #71547]

SI-ID 396774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudochrobactrum lubricantis sp. nov., isolated from a metal-working fluid.	Kampfer P, Huber B, Lodders N, Warfolomeow I, Busse HJ, Scholz HC	Int J Syst Evol Microbiol	10.1099/ijs.0.008540-0	2009	*

References

#17372

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23782

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23348

Peter Kämpfer, Birgit Huber, Nicole Lodders, Isabel Warfolomeow, Hans-Jürgen Busse, Holger C. Scholz: Pseudochrobactrum lubricantis sp. nov., isolated from a metal-working fluid. IJSEM 59: 2464 - 2467 2009 ( DOI 10.1099/ijs.0.008540-0 , PubMed 19622660 )

#61143 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56963

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71547

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396774.1 )

* These data were automatically processed and therefore are not curated

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