Daeguia caeni K107 | Type strain | DSM 21779, CCUG 54520, KCTC 12981

Strain identifier

BacDive ID: 1904

Type strain:

Species: Daeguia caeni

Strain Designation: K107

Culture col. no.: DSM 21779, CCUG 54520, KCTC 12981

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #15944]	Domain	Bacteria
[Ref.: #15944]	Phylum	Proteobacteria
[Ref.: #15944]	Class	Alphaproteobacteria
[Ref.: #15944]	Order	Rhizobiales
[Ref.: #15944]	Family	Brucellaceae
[Ref.: #15944]	Genus	Daeguia
[Ref.: #15944]	Species	Daeguia caeni
[Ref.: #15944]	Full Scientific Name	Daeguia caeni Yoon et al. 2008
[Ref.: #15944]	Strain Designation	K107
[Ref.: #15944]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	25-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Alphaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Brucellaceae		Int. J. Syst. Bacteriol. 30:235
[Ref.: #20215]	Genus	Daeguia	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 58:168*
[Ref.: #20215]	Species	Daeguia caeni	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 58:168*
[Ref.: #20215]	Full Scientific Name	Daeguia caeni Yoon et al. 2008

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #23349]	Gram stain	negative
[Ref.: #23349]	Cell length	0.7-2.0 µm
[Ref.: #23349]	Cell width	0.4-0.6 µm
[Ref.: #23349]	Cell shape	rod-shaped

[Ref.: #23349]	Colony size	1.0-1.5 mm
[Ref.: #23349]	Colony color	greyish yellow
[Ref.: #23349]	Colony shape	circular
[Ref.: #23349]	Incubation period	2 days
[Ref.: #23349]	Cultivation medium used	TSA

[Ref.: #60210]	Incubation period	2 days

	Enzyme	Enzyme activity	EC number
[Ref.: #23349]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #23349]	acid phosphatase	+	3.1.3.2
[Ref.: #23349]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23349]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23349]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23349]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23349]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23349]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23349]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23349]	beta-glucosidase	-	3.2.1.21
[Ref.: #23349]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23349]	cystine arylamidase	-	3.4.11.3
[Ref.: #23349]	esterase (C 4)	+
[Ref.: #23349]	esterase lipase (C 8)	+
[Ref.: #23349]	leucine arylamidase	+	3.4.11.1
[Ref.: #23349]	lipase (C 14)	-
[Ref.: #23349]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23349]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23349]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23349]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #23349]	trypsin	-	3.4.21.4
[Ref.: #23349]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23349]	urease	-	3.5.1.5
[Ref.: #23349]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23349]		NaCl		growth	0-4	%
[Ref.: #23349]		NaCl		optimum	0.5-1.0	%

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #23349]	Ampicillin		yes
[Ref.: #23349]	Carbenicillin	yes
[Ref.: #23349]	Cephalothin	yes
[Ref.: #23349]	Chloramphenicol	yes
[Ref.: #23349]	Gentamicin	yes
[Ref.: #23349]	Kanamycin	yes
[Ref.: #23349]	Lincomycin		yes
[Ref.: #23349]	Neomycin	yes
[Ref.: #23349]	Novobiocin	yes
[Ref.: #23349]	Oleandomycin		yes
[Ref.: #23349]	Penicillin G		yes
[Ref.: #23349]	Polymyxin B		yes
[Ref.: #23349]	Streptomycin	yes
[Ref.: #23349]	Tetracycline	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23349]		Hydrogen sulfide	no
[Ref.: #23349]		Indole	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23349]	2-Dehydro-D-gluconate	-	assimilation
[Ref.: #23349]	5-Dehydro-D-gluconate	-	assimilation
[Ref.: #23349]	Adipic acid	+/-	assimilation
[Ref.: #23349]	Adonitol	+	assimilation
[Ref.: #23349]	Amygdalin	-	assimilation
[Ref.: #23349]	Arbutin	-	assimilation
[Ref.: #23349]	Caprate	-	assimilation
[Ref.: #23349]	Casein	-	hydrolysis
[Ref.: #23349]	Cellobiose	-	assimilation
[Ref.: #23349]	Citric acid	-	assimilation
[Ref.: #23349]	D-Arabinose	-	assimilation
[Ref.: #23349]	D-Arabitol	-	assimilation
[Ref.: #23349]	D-Fructose	-	assimilation
[Ref.: #23349]	D-Fucose	-	assimilation
[Ref.: #23349]	D-Galactose	-	assimilation
[Ref.: #23349]	D-Glucose	+	assimilation
[Ref.: #23349]	D-Lyxose	-	assimilation
[Ref.: #23349]	D-Mannitol	-	assimilation
[Ref.: #23349]	D-Sorbitol	-	assimilation
[Ref.: #23349]	D-Tagatose	-	assimilation
[Ref.: #23349]	D-Xylose	-	assimilation
[Ref.: #23349]	Erythritol	-	assimilation
[Ref.: #23349]	Esculin	-	assimilation
[Ref.: #23349]	Esculin	-	hydrolysis
[Ref.: #23349]	Galactitol	-	assimilation
[Ref.: #23349]	Gelatin	-	hydrolysis
[Ref.: #23349]	Gentiobiose	-	assimilation
[Ref.: #23349]	Gluconate	-	assimilation
[Ref.: #23349]	Glycerol	-	assimilation
[Ref.: #23349]	Glycogen	-	assimilation
[Ref.: #23349]	Hypoxanthine	+	hydrolysis
[Ref.: #23349]	Inositol	+	assimilation
[Ref.: #23349]	Inulin	-	assimilation
[Ref.: #23349]	L-Arabinose	-	assimilation
[Ref.: #23349]	L-Arabitol	-	assimilation
[Ref.: #23349]	L-Fucose	-	assimilation
[Ref.: #23349]	L-Xylose	-	assimilation
[Ref.: #23349]	Lactose	-	assimilation
[Ref.: #23349]	Malic acid	-	assimilation
[Ref.: #23349]	Maltose	-	assimilation
[Ref.: #23349]	Mannose	+	assimilation
[Ref.: #23349]	Melezitose	-	assimilation
[Ref.: #23349]	Melibiose	-	assimilation
[Ref.: #23349]	Methyl alpha-D-mannoside	-	assimilation
[Ref.: #23349]	methyl beta-D-glucopyranoside	-	assimilation
[Ref.: #23349]	Methyl beta-D-xylopyranoside	-	assimilation
[Ref.: #23349]	N-Acetylglucosamine	+	assimilation
[Ref.: #23349]	Nitrate	-	reduction
[Ref.: #23349]	Phenylacetic acid	+	assimilation
[Ref.: #23349]	Raffinose	-	assimilation
[Ref.: #23349]	Rhamnose	-	assimilation
[Ref.: #23349]	Ribose	-	assimilation
[Ref.: #23349]	Salicin	-	assimilation
[Ref.: #23349]	Sorbose	-	assimilation
[Ref.: #23349]	Starch	-	assimilation
[Ref.: #23349]	Starch	-	hydrolysis
[Ref.: #23349]	Sucrose	-	assimilation
[Ref.: #23349]	Trehalose	-	assimilation
[Ref.: #23349]	Turanose	-	assimilation
[Ref.: #23349]	Tween 20	-	hydrolysis
[Ref.: #23349]	Tween 40	-	hydrolysis
[Ref.: #23349]	Tween 60	-	hydrolysis
[Ref.: #23349]	Tween 80	-	hydrolysis
[Ref.: #23349]	Tyrosine	-	hydrolysis
[Ref.: #23349]	Urea	-	hydrolysis
[Ref.: #23349]	Xanthine	-	hydrolysis
[Ref.: #23349]	Xylitol	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

[Ref.: #23349]	Oxygen tolerance	facultative aerobe
[Ref.: #23349]	Oxygen tolerance	aerobe
[Ref.: #60210]	Oxygen tolerance	aerobe

[Ref.: #23349]

Ability of spore formation

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #15944]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 37°C

[Ref.: #15944]

Culture medium growth

[Ref.: #15944]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #23349]

Culture medium

TSA

[Ref.: #23349]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #15944]		growth	37 ̊C
[Ref.: #23349]		growth	15-55 ̊C
[Ref.: #23349]	no	growth	10 ̊C
[Ref.: #23349]	no	growth	56 ̊C
[Ref.: #23349]		growth	45 ̊C
[Ref.: #23349]		optimum	30-37 ̊C
[Ref.: #60210]		growth	30-42 ̊C

[Ref.: #15944]	Temperature range	mesophilic
[Ref.: #23349]	Temperature range	psychrophilic
[Ref.: #23349]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #23349]		optimum	7.0-8.0
[Ref.: #23349]		growth	5.0-9.0
[Ref.: #23349]	no	growth	4.5
[Ref.: #23349]	no	growth	9.5

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #15944]

Sample type/isolated from

sludge from a textile dye works

[Ref.: #15944]

Geographic location (country and/or sea, region)

Daegu

[Ref.: #15944]

Country

Republic of Korea

[Ref.: #15944]

Continent

Asia

[Ref.: #60210]

Sample type/isolated from

Sludge of a dye-works

[Ref.: #60210]

Sampling date

2004-04-01

[Ref.: #60210]

Geographic location (country and/or sea, region)

Daegu

[Ref.: #60210]

Country

Republic of Korea

[Ref.: #60210]

Continent

Asia

Isolation sources categories

#Engineered	#Industrial	#Industrial production
#Environmental	#Aquatic	#Mud (Sludge)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #15944]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #15944]	GC-content	57 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23349]	GC-content	57.0 mol%	high performance liquid chromatography (HPLC)

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #15944]	GenBank Direct submission	Daeguia caeni strain K107 RecA (recA) gene, partial cds	EU022306		550	439612
[Ref.: #15944]	GenBank Direct submission	Daeguia caeni strain K107 16S ribosomal RNA gene, partial sequence	EF532794	16S	1441	439612

Availability in culture collectionsStrain availability

[Ref.: #15944]

Culture collection no.

DSM 21779, CCUG 54520, KCTC 12981

[Ref.: #15944]

Strain history

<- KCTC <- J.-H. Yoon, KRIBB

[Ref.: #20218]

Associated Passport(s) in StrainInfo

766127, 766128

References

#15944

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21779

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23349

Jung-Hoon Yoon, So-Jung Kang, Sooyeon Park, Tae-Kwang Oh: Daeguia caeni gen. nov., sp. nov., isolated from sludge of a textile dye works. IJSEM 58: 168 - 172 2008 ( DOI 10.1099/ijs.0.65483-0 )

#60210 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54520
* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Daeguia caeni in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF