Name: Daeguia caeni K107
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1904

Type strain:

Species: Daeguia caeni

Strain Designation: K107

Culture col. no.: DSM 21779, CCUG 54520, KCTC 12981

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 439612 (species)

Section

Daeguia caeni K107 is a facultative aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sludge from a textile dye works.

colony-forming
Gram-negative
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Daeguia*
	Species	**Daeguia caeni**
	Full Scientific Name (PNU)	Daeguia caeni Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #23349]	Gram stain	negative
[Ref.: #23349]	Cell length	0.7-2.0 µm
[Ref.: #23349]	Cell width	0.4-0.6 µm
[Ref.: #23349]	Cell shape	rod-shaped

[Ref.: #67771]	Gram stain	negative

[Ref.: #23349]	Colony size	1.0-1.5 mm
[Ref.: #23349]	Colony color	greyish yellow
[Ref.: #23349]	Colony shape	circular
[Ref.: #23349]	Incubation period	2 days
[Ref.: #23349]	Cultivation medium used	TSA

[Ref.: #60210]	Incubation period	2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15944]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15944]

Culture medium growth

[Ref.: #15944]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #15944]

Culture medium composition

expand / minimize

[Ref.: #23349]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #23349]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #15944]		growth	37 °C
[Ref.: #23349]		growth	15-55 °C
[Ref.: #23349]	no	growth	10 °C
[Ref.: #23349]	no	growth	56 °C
[Ref.: #23349]		growth	45 °C
[Ref.: #23349]		optimum	30-37 °C
[Ref.: #60210]		growth	30-42 °C
[Ref.: #67771]		growth	37 °C

[Ref.: #15944]	Temperature range	mesophilic
[Ref.: #23349]	Temperature range	psychrophilic
[Ref.: #23349]	Temperature range	thermophilic
[Ref.: #23349]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH	pH range
[Ref.: #23349]		optimum	7.0-8.0
[Ref.: #23349]		growth	5.0-9.0	alkaliphile
[Ref.: #23349]	no	growth	4.5
[Ref.: #23349]	no	growth	9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23349]	Oxygen tolerance	facultative aerobe
[Ref.: #23349]	Oxygen tolerance	aerobe
[Ref.: #60210]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #23349]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23349]		NaCl		growth	0-4	%
[Ref.: #23349]		NaCl		optimum	0.5-1.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23349]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23349]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #23349]	adipate ChEBI	+/-	assimilation
[Ref.: #23349]	amygdalin ChEBI	-	assimilation
[Ref.: #23349]	arbutin ChEBI	-	assimilation
[Ref.: #23349]	casein	-	hydrolysis
[Ref.: #23349]	cellobiose ChEBI	-	assimilation
[Ref.: #23349]	citrate ChEBI	-	assimilation
[Ref.: #23349]	D-arabinose ChEBI	-	assimilation
[Ref.: #23349]	D-arabitol ChEBI	-	assimilation
[Ref.: #23349]	D-fructose ChEBI	-	assimilation
[Ref.: #23349]	D-fucose ChEBI	-	assimilation
[Ref.: #23349]	D-galactose ChEBI	-	assimilation
[Ref.: #23349]	D-glucose ChEBI	+	assimilation
[Ref.: #23349]	D-lyxose ChEBI	-	assimilation
[Ref.: #23349]	D-mannitol ChEBI	-	assimilation
[Ref.: #23349]	D-sorbitol ChEBI	-	assimilation
[Ref.: #23349]	D-tagatose ChEBI	-	assimilation
[Ref.: #23349]	D-xylose ChEBI	-	assimilation
[Ref.: #23349]	decanoate ChEBI	-	assimilation
[Ref.: #23349]	erythritol ChEBI	-	assimilation
[Ref.: #23349]	esculin ChEBI	-	assimilation
[Ref.: #23349]	esculin ChEBI	-	hydrolysis
[Ref.: #23349]	galactitol ChEBI	-	assimilation
[Ref.: #23349]	gelatin ChEBI	-	hydrolysis
[Ref.: #23349]	gentiobiose ChEBI	-	assimilation
[Ref.: #23349]	gluconate ChEBI	-	assimilation
[Ref.: #23349]	glycerol ChEBI	-	assimilation
[Ref.: #23349]	glycogen ChEBI	-	assimilation
[Ref.: #23349]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #23349]	inulin ChEBI	-	assimilation
[Ref.: #23349]	L-arabinose ChEBI	-	assimilation
[Ref.: #23349]	L-arabitol ChEBI	-	assimilation
[Ref.: #23349]	L-fucose ChEBI	-	assimilation
[Ref.: #23349]	L-xylose ChEBI	-	assimilation
[Ref.: #23349]	lactose ChEBI	-	assimilation
[Ref.: #23349]	malate ChEBI	-	assimilation
[Ref.: #23349]	maltose ChEBI	-	assimilation
[Ref.: #23349]	mannose ChEBI	+	assimilation
[Ref.: #23349]	melezitose ChEBI	-	assimilation
[Ref.: #23349]	melibiose ChEBI	-	assimilation
[Ref.: #23349]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #23349]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #23349]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #23349]	myo-inositol ChEBI	+	assimilation
[Ref.: #23349]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #23349]	nitrate ChEBI	-	reduction
[Ref.: #23349]	phenylacetate ChEBI	+	assimilation
[Ref.: #23349]	raffinose ChEBI	-	assimilation
[Ref.: #23349]	rhamnose ChEBI	-	assimilation
[Ref.: #23349]	ribitol ChEBI	+	assimilation
[Ref.: #23349]	ribose ChEBI	-	assimilation
[Ref.: #23349]	salicin ChEBI	-	assimilation
[Ref.: #23349]	sorbose ChEBI	-	assimilation
[Ref.: #23349]	starch ChEBI	-	assimilation
[Ref.: #23349]	starch ChEBI	-	hydrolysis
[Ref.: #23349]	sucrose ChEBI	-	assimilation
[Ref.: #23349]	trehalose ChEBI	-	assimilation
[Ref.: #23349]	turanose ChEBI	-	assimilation
[Ref.: #23349]	tween 20 ChEBI	-	hydrolysis
[Ref.: #23349]	tween 40 ChEBI	-	hydrolysis
[Ref.: #23349]	tween 60 ChEBI	-	hydrolysis
[Ref.: #23349]	tween 80 ChEBI	-	hydrolysis
[Ref.: #23349]	tyrosine ChEBI	-	hydrolysis
[Ref.: #23349]	urea ChEBI	-	hydrolysis
[Ref.: #23349]	xanthine ChEBI	-	hydrolysis
[Ref.: #23349]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #23349]	ampicillin ChEBI		yes
[Ref.: #23349]	carbenicillin ChEBI	yes
[Ref.: #23349]	cephalothin ChEBI	yes
[Ref.: #23349]	chloramphenicol ChEBI	yes
[Ref.: #23349]	gentamicin ChEBI	yes
[Ref.: #23349]	kanamycin ChEBI	yes
[Ref.: #23349]	lincomycin ChEBI		yes
[Ref.: #23349]	neomycin ChEBI	yes
[Ref.: #23349]	novobiocin ChEBI	yes
[Ref.: #23349]	oleandomycin ChEBI		yes
[Ref.: #23349]	penicillin g ChEBI		yes
[Ref.: #23349]	polymyxin b ChEBI		yes
[Ref.: #23349]	streptomycin ChEBI	yes
[Ref.: #23349]	tetracycline ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #23349]		hydrogen sulfide ChEBI
[Ref.: #23349]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #23349]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #23349]	acid phosphatase	+	3.1.3.2
[Ref.: #23349]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23349]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23349]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23349]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23349]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23349]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23349]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23349]	beta-glucosidase	-	3.2.1.21
[Ref.: #23349]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23349]	cystine arylamidase	-	3.4.11.3
[Ref.: #23349]	esterase (C 4)	+
[Ref.: #23349]	esterase lipase (C 8)	+
[Ref.: #23349]	leucine arylamidase	+	3.4.11.1
[Ref.: #23349]	lipase (C 14)	-
[Ref.: #23349]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23349]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23349]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23349]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #23349]	trypsin	-	3.4.21.4
[Ref.: #23349]	tryptophan deaminase	-	4.1.99.1
[Ref.: #23349]	urease	-	3.5.1.5
[Ref.: #23349]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15944]	Sample type/isolated from	sludge from a textile dye works
[Ref.: #15944]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #15944]	Country	Republic of Korea
[Ref.: #15944]	Country ISO 3 Code	KOR
[Ref.: #15944]	Continent	Asia

[Ref.: #60210]	Sample type/isolated from	Sludge of a dye-works
[Ref.: #60210]	Sampling date	2004-04-01
[Ref.: #60210]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #60210]	Country	Republic of Korea
[Ref.: #60210]	Country ISO 3 Code	KOR
[Ref.: #60210]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From wastewater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daegu
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15944]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15944]	Daeguia caeni strain K107 16S ribosomal RNA gene, partial sequence	EF532794	1441	ENA	439612 tax ID

[Ref.: #15944]	GC-content	57 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23349]	GC-content	57.0 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15944]

Culture collection no.

DSM 21779, CCUG 54520, KCTC 12981

[Ref.: #20218]

Associated Passport(s) in StrainInfo

766127, 766128

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Daeguia caeni gen. nov., sp. nov., isolated from sludge of a textile dye works.	Yoon JH, Kang SJ, Park S, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65483-0	2008	*

References

#15944

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21779

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23349

Jung-Hoon Yoon, So-Jung Kang, Sooyeon Park, Tae-Kwang Oh: Daeguia caeni gen. nov., sp. nov., isolated from sludge of a textile dye works. IJSEM 58: 168 - 172 2008 ( DOI 10.1099/ijs.0.65483-0 , PubMed 18175704 )

#60210 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54520
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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