Brevibacterium luteolum (DSM 15022, CCUG 46604, CIP 108129)

Name: Brevibacterium luteolum (DSM 15022, CCUG 46604, CIP 108129)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1856

Type strain

Strain Designation CF87

Culture col. no. DSM 15022 CCUG 46604 CIP 108129 JCM 12367 CCM 7149 1 more

NCBI tax ID(s) 199591

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- G. Wauters; CF87 (Brevibacterium lutescens) <- B. van Bosterhaut JCM <-- CCUG 46604 <-- G. Wauters CF87 <-- B. Van Bosterhaut. CIP <- 2003, CCUG <- G. Wauters, UCL, Brussels, Belgium: strain CF87

Links

Brevibacterium luteolum CF87 is an aerobe, Gram-positive, flask-shaped bacterium that was isolated from human peritoneal fluid.

Gram-positive flask-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 126463

DSM 15022,CCUG 46604,CCM 7149,CIP 108129,JCM 12367

@ref 20215

Last LPSN update 2026-05-29 08:25:21

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Brevibacteriaceae

Genus Brevibacterium

Species Brevibacterium luteolum

Full scientific name Brevibacterium luteolum corrig. Wauters et al. 2003

Synonyms (1)

Brevibacterium lutescens

BacDive ID	Other strains from **Brevibacterium luteolum** (6)	Type strain
1857	B. luteolum CF32, CCUG 46605, DSM 15023
1858	B. luteolum CF60, DSM 15024, CCUG 46606
1859	B. luteolum CF100, CCUG 46607, DSM 15025
151592	B. luteolum CCUG 44399
156922	B. luteolum CCUG 67077
157200	B. luteolum CCUG 70462

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120691	positive	flask-shaped
125438			91.5
125438	positive		92.683
125439	positive		94.332

Colony morphology

@ref	Incubation period	Hemolysis ability
57282	1 day
120691		1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5673	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
5673	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
32888	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120691	CIP Medium 72	Medium recipe at CIP
120691	CIP Medium 6	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5673	positive	growth	37
32888	positive	growth	37
57282	positive	growth	37-42
67770	positive	growth	37
120691	positive	growth	25-41
120691	negative	growth	10
120691	negative	growth	15
120691	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57282	aerobe
120691	obligate aerobe
125439	obligate aerobe	98.668

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120691	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120691	16947 ChEBI	citrate	-	carbon source
120691	4853 ChEBI	esculin	-	hydrolysis
120691	606565 ChEBI	hippurate	-	hydrolysis
120691	17632 ChEBI	nitrate	-	reduction
120691	17632 ChEBI	nitrate	-	respiration
120691	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
120691	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120691	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120691	15688 ChEBI	acetoin	-
120691	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120691	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120691	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120691	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120691	caseinase	+	3.4.21.50
120691	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120691	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120691	gamma-glutamyltransferase	-	2.3.2.2
120691	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
120691	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120691	ornithine decarboxylase	-	4.1.1.17
120691	oxidase	-
120691	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
120691	tryptophan deaminase	-
120691	tween esterase	-
120691	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	propanol degradation	100	7 of 7
66794	ethanol fermentation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	allantoin degradation	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	threonine metabolism	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	flavin biosynthesis	86.67	13 of 15
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	proline metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	purine metabolism	71.28	67 of 94
66794	arginine metabolism	70.83	17 of 24
66794	glycolysis	70.59	12 of 17
66794	phenol degradation	70	14 of 20
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	pyrimidine metabolism	66.67	30 of 45
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	gluconeogenesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	oxidative phosphorylation	61.54	56 of 91
66794	cysteine metabolism	61.11	11 of 18
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	Entner Doudoroff pathway	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	lipid metabolism	58.06	18 of 31
66794	non-pathway related	57.89	22 of 38
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	d-mannose degradation	55.56	5 of 9
66794	CMP-KDO biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	vitamin B6 metabolism	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	tyrosine metabolism	42.86	6 of 14
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	factor 420 biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	degradation of sugar acids	40	10 of 25
66794	starch degradation	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	glycogen metabolism	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	degradation of hexoses	38.89	7 of 18
66794	chlorophyll metabolism	38.89	7 of 18
66794	ketogluconate metabolism	37.5	3 of 8
66794	carnitine metabolism	37.5	3 of 8
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carotenoid biosynthesis	36.36	8 of 22
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120691	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Fluids	-
#Host Body-Site	#Other	#Abdomen

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
5673	human peritoneal fluid	Homo sapiens		Belgium	BEL	Europe
57282	Human peritoneal fluid,patient undergoing dialysis	Homo sapiens	1999	Belgium	BEL	Europe
67770	Peritoneal fluid of a patient undergoing dialysis	Homo sapiens
120691	Human, Peritoneal fluid	Homo sapiens		Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ488509 (>99% sequence identity) for Brevibacterium luteolum from Microbeatlas

Aquatic Samples	3023
Soil Samples	2899
Animal Samples	16149
Plant Samples	2049
Total Samples	24120

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
5673	yes, in single cases	1	Risk group (German classification) According to TRBA 466
120691		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690741v1 assembly for Brevibacterium luteolum DSM 15022	contig	GCA_016907415	199591.12	2893558195	199591	70.69
67770	ASM1300459v1 assembly for Brevibacterium luteolum CCUG 46604	contig	GCA_013004595	199591.9	8110791486	199591	66.81
124043	ASM3952765v1 assembly for Brevibacterium luteolum JCM 12367	scaffold	GCA_039527655			199591	52.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Brevibacterium lutescens partial 16S rRNA gene, type strain CF87T	AJ488509	1498		199591

GC content

5673

GC-content (mol%)68.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1690741v1 assembly for Brevibacterium luteolum DSM 15022
NCBI: GCA_016907415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.67	no
125439	gram_stain	BacteriaNetⓘ	positive	94.33	no
125439	motility	BacteriaNetⓘ	no	76.95	no
125439	spore_formation	BacteriaNetⓘ	no	87.52	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brevibacterium luteolum strain CCUG 46604
PATRIC: 199591.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.68	no
125438	anaerobic	anaerobicⓘ	no	96.75	no
125438	spore-forming	spore-formingⓘ	no	75.35	no
125438	aerobic	aerobicⓘ	yes	86.31	no
125438	thermophilic	thermophileⓘ	no	96.11	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of a new carotenoid-producing strain Brevibacterium sp. XU54, isolated from radioactive soil in Xinjiang, China.	Zhang Z, Huang C, Du B, Xie C, Jiang L, Tang S, Xu X.	3 Biotech	10.1007/s13205-022-03366-1	2022
Genetics	Comprehensive Genome Analysis of Two Bioactive Brevibacterium Strains Isolated from Marine Sponges from the Red Sea.	Mohamed YS, Solyman SM, Sedeek AM, Kamel HL, El Samak M.	Biology (Basel)	10.3390/biology14091271	2025
Phylogeny	Brevibacterium lutescens sp. nov., from human and environmental samples.	Wauters G, Avesani V, Laffineur K, Charlier J, Janssens M, Van Bosterhaut B, Delmee M	Int J Syst Evol Microbiol	10.1099/ijs.0.02513-0	2003

References

#5673	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15022
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32888	; Curators of the CIP;
#57282	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46604
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120691	Collection of Institut Pasteur ; Curators of the CIP; CIP 108129
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacterium luteolum (DSM 15022, CCUG 46604, CIP 108129)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016907415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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