[Ref.: #4416]
Sample type/isolated from
soybean Glycine max
[Ref.: #4416]
Host species
Glycine max
[Ref.: #4416]
Country
USA
[Ref.: #4416]
Country ISO 3 Code
USA
[Ref.: #4416]
Continent
North America
* marker position based on {}
Isolation sources categories
#Host
#Plants
#Herbaceous plants (Grass,Crops)
#Host Body-Site
#Plant
#Fruit (Seed)
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence
AF362942
1042
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii strain LMG 6134 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence
AF345254
854
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii gene for 16S ribosomal RNA, partial sequence, strain: NBRC 14791
AB509378
1414
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii genes for 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile, tRNA-Ala, partial and complete sequence, strain: NBRC 14791
AB509379
833
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii DNA, 16S-23S ITS1 region, tRNA-Ile, tRNA-Ala, strain: USDA 76
AB100747
809
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii strain USDA 76 16S ribosomal RNA gene, partial sequence
HQ233240
1340
29448 tax ID
*
[Ref.: #20218]
Bradyrhizobium japonicum (USDA 76) 16S ribosomal RNA (partial)
M55490
264
375 tax ID
*
[Ref.: #20218]
Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, complete sequence
U35000
5136
29448 tax ID
*
Availability in culture collections External links
[Ref.: #4416]
Culture collection no.
DSM 11554 , ATCC 49852 , USDA 76, JCM 20971 , IAM 13629
[Ref.: #20218]
Associated Passport(s) in StrainInfo
162736 , 5815
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Genetics
Common soybean inoculant strains in Brazil are members of Bradyrhizobium elkanii.
Rumjanek NG, Dobert RC, van Berkum P, Triplett EW
Appl Environ Microbiol
10.1128/aem.59.12.4371-4373.1993
1993
*
Phylogeny
Phylogenetic analyses of Bradyrhizobium strains nodulating soybean (Glycine max) in Thailand with reference to the USDA strains of Bradyrhizobium.
Ando S, Yokoyama T
Can J Microbiol
10.1139/w99-061
1999
*
Phylogeny
Case of localized recombination in 23S rRNA genes from divergent bradyrhizobium lineages associated with neotropical legumes.
Parker MA
Appl Environ Microbiol
10.1128/AEM.67.5.2076-2082.2001
2001
*
Phylogeny
rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin.
Qian J, Kwon SW, Parker MA
FEMS Microbiol Lett
10.1016/S0378-1097(03)00043-0
2003
*
Phylogeny
RFLP analysis of the rRNA operon of a Brazilian collection of bradyrhizobial strains from 33 legume species.
Germano MG, Menna P, Mostasso FL, Hungria M
Int J Syst Evol Microbiol
10.1099/ijs.0.02917-0
2006
*
Phylogeny
Bradyrhizobium pachyrhizi sp. nov. and Bradyrhizobium jicamae sp. nov., isolated from effective nodules of Pachyrhizus erosus.
Ramirez-Bahena MH, Peix A, Rivas R, Camacho M, Rodriguez-Navarro DN, Mateos PF, Martinez-Molina E, Willems A, Velazquez E
Int J Syst Evol Microbiol
10.1099/ijs.0.006320-0
2009
*
Phylogeny
Phylogeny and taxonomy of a diverse collection of Bradyrhizobium strains based on multilocus sequence analysis of the 16S rRNA gene, ITS region and glnII, recA, atpD and dnaK genes.
Menna P, Barcellos FG, Hungria M
Int J Syst Evol Microbiol
10.1099/ijs.0.009779-0
2009
*
Genetics
The structure of a novel neutral lipid A from the lipopolysaccharide of Bradyrhizobium elkanii containing three mannose units in the backbone.
Komaniecka I, Choma A, Lindner B, Holst O
Chemistry
10.1002/chem.200902390
2010
*
Phylogeny
Bradyrhizobium lablabi sp. nov., isolated from effective nodules of Lablab purpureus and Arachis hypogaea.
Chang YL, Wang JY, Wang ET, Liu HC, Sui XH, Chen WX
Int J Syst Evol Microbiol
10.1099/ijs.0.027110-0
2010
*
Enzymology
Changes in population occupancy of Bradyrhizobia under different temperature regimes.
Saeki Y, Ozumi S, Yamamoto A, Umehara Y, Hayashi M, Sigua GC
Microbes Environ
10.1264/jsme2.me10128
2010
*
Phylogeny
Bradyrhizobium valentinum sp. nov., isolated from effective nodules of Lupinus mariae-josephae, a lupine endemic of basic-lime soils in Eastern Spain.
Duran D, Rey L, Navarro A, Busquets A, Imperial J, Ruiz-Argueso T
Syst Appl Microbiol
10.1016/j.syapm.2014.05.002
2014
*
Phylogeny
Bradyrhizobium erythrophlei sp. nov. and Bradyrhizobium ferriligni sp. nov., isolated from effective nodules of Erythrophleum fordii.
Yao Y, Sui XH, Zhang XX, Wang ET, Chen WX
Int J Syst Evol Microbiol
10.1099/ijs.0.000183
2015
*
Genetics
High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76(T), isolated from Glycine max (L.) Merr.
Reeve W, van Berkum P, Ardley J, Tian R, Gollagher M, Marinova D, Elia P, Reddy TBK, Pillay M, Varghese N, Seshadri R, Ivanova N, Woyke T, Baeshen MN, Baeshen NA, Kyrpides N
Stand Genomic Sci
10.1186/s40793-017-0238-2
2017
*
Metabolism
A Proteomic Network for Symbiotic Nitrogen Fixation Efficiency in Bradyrhizobium elkanii.
Cooper B, Campbell KB, Beard HS, Garrett WM, Mowery J, Bauchan GR, Elia P
Mol Plant Microbe Interact
10.1094/MPMI-10-17-0243-R
2018
*
Enzymology
Bacterial exopolysaccharides as a modern biotechnological tool for modification of fungal laccase properties and metal ion binding.
Osinska-Jaroszuk M, Jaszek M, Starosielec M, Sulej J, Matuszewska A, Janczarek M, Bancerz R, Wydrych J, Wiater A, Jarosz-Wilkolazka A
Bioprocess Biosyst Eng
10.1007/s00449-018-1928-x
2018
*
Phylogeny
Bradyrhizobium ripae sp. nov., a nitrogen-fixing symbiont isolated from nodules of wild legumes in Namibia.
Bunger W, Gronemeyer JL, Sarkar A, Reinhold-Hurek B
Int J Syst Evol Microbiol
10.1099/ijsem.0.002955
2018
*
References
#4416
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 11554
#66794
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
* These data were automatically processed and therefore are not curated
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