Bradyrhizobium elkanii USDA 76 | Type strain | DSM 11554, ATCC 49852

Strain identifier

BacDive ID: 1811

Type strain:

Species: Bradyrhizobium elkanii

Strain Designation: USDA 76

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Rhizobiales
	Family	Bradyrhizobiaceae
	Genus	Bradyrhizobium
	Species	Bradyrhizobium elkanii
	Full Scientific Name (PNU)	Bradyrhizobium elkanii Kuykendall et al. 1993

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4416]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98), 30°C

[Ref.: #4416]

Culture medium growth

[Ref.: #4416]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #4416]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #4416]			growth	30 ̊C

[Ref.: #4416]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4416]

Sample type/isolated from

soybean Glycine max

[Ref.: #4416]

Host species

Glycine max

[Ref.: #4416]

Country

USA

[Ref.: #4416]

Continent

North America

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4416]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence	AF362942 ENA	16S	1042	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain ICMP 13638 AtpD (atpD) gene, partial cds	AY493446 ENA		455	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii ICMP 13638 glutamine synthetase II (glnII) gene, partial cds	AY494804 ENA		828	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nifH gene for dinitrogen reductase, partial cds	AB094963 ENA		783	398525 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodC gene for N-acetylglucosaminyltransferase, partial cds, strain: IFO 14791T	AB354631 ENA		747	398525 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain LMG 6134 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence	AF345254 ENA	16S	854	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii nitrogenase iron protein (nifH) gene, partial cds	AF484640 ENA		446	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii internal transcribed spacer 1, strain LMG 6134	AJ279308 ENA		809	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial recA gene for recombinase A	AM168342 ENA		559	398525 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial dnaK gene for Hsp70 molecular chaperone	AM168363 ENA		707	398525 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial noeE gene for sulfate transferase	AM168374 ENA		629	398525 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial nodZ gene for fucosyltransferase	AM168395 ENA		467	398525 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial noeI gene for 2-O-methyltransferase	AM168415 ENA		353	398525 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gltA gene for citrate synthase, strain LMG 6134	AM181653 ENA		642	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial thrC gene for threonine synthase, strain LMG 6134	AM181727 ENA		636	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial recA gene for recombinase A, strain LMG 6134	AM182155 ENA		499	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial glnA gene for glutamine synthase, strain LMG 6134	AM182976 ENA		977	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial rpoB gene for RNA polymerase beta subunit, strain LMG 6134	AM295348 ENA		954	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gap gene for glyceraldehyde 3-phosphate dehydrogenase, strain LMG 6134	AM295405 ENA		798	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial pnp gene for polyribonucleotide nucleotidyltransferase, strain LMG 6134	AM295489 ENA		540	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial 23S rRNA gene, strain LMG 6134	AM418712 ENA		1897	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial atpD gene for ATP synthase beta subunit, strain LMG 6134	AM418752 ENA		486	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial gyrB gene for DNA gyrase subunit beta, strain LMG 6134	AM418800 ENA		666	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial pal gene for peptidoglycan-associated lipoprotein, type strain LMG 6134T	FM213187 ENA		261	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial ribonuclease P RNA (rnpB gene), type strain LMG 6134T	FM213236 ENA		314	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii gene for 16S ribosomal RNA, partial sequence, strain: NBRC 14791	AB509378 ENA	16S	1414	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii genes for 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile, tRNA-Ala, partial and complete sequence, strain: NBRC 14791	AB509379 ENA	16S	833	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii gyrB gene for DNA gyrase subunit B, partial cds, strain:USDA76T	AB070584 ENA		909	398525 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodD gene for nodulation regulator protein, partial cds, strain: USDA 76	AB073139 ENA		867	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii nodY pseudogene for nodulation regulator protein, strain: USDA 76	AB073145 ENA		452	29448 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bradyrhizobium elkanii DNA, 16S-23S ITS1 region, tRNA-Ile, tRNA-Ala, strain: USDA 76	AB100747 ENA	16S	809	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 23S ribosomal RNA gene, partial sequence	AF321224 ENA		468	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 dinitrogenase alpha subunit (nifD) gene, partial cds	AF484266 ENA		815	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial nodZ gene for fucosyltransferase, strain USDA76	AJ431123 ENA		459	186896 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii partial dnaK gene for molecular chaperone, strain USDA 76	AJ431152 ENA		278	29448 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bradyrhizobium elkanii nodA gene and partial nodB gene, strain USDA76	AM117554 ENA		1315	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C1, whole genome shotgun sequence	ARAG01000001 ENA	WGS	2126	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C2, whole genome shotgun sequence	ARAG01000002 ENA	WGS	1371268	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C3, whole genome shotgun sequence	ARAG01000003 ENA	WGS	1629	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C4, whole genome shotgun sequence	ARAG01000004 ENA	WGS	271804	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C5, whole genome shotgun sequence	ARAG01000005 ENA	WGS	1852064	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C6, whole genome shotgun sequence	ARAG01000006 ENA	WGS	92065	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C7, whole genome shotgun sequence	ARAG01000007 ENA	WGS	59317	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C8, whole genome shotgun sequence	ARAG01000008 ENA	WGS	1154065	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C9, whole genome shotgun sequence	ARAG01000009 ENA	WGS	2493299	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C10, whole genome shotgun sequence	ARAG01000010 ENA	WGS	2425	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C11, whole genome shotgun sequence	ARAG01000011 ENA	WGS	1804836	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold1.1_C12, whole genome shotgun sequence	ARAG01000012 ENA	WGS	10507	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C1, whole genome shotgun sequence	ARAG01000013 ENA	WGS	2509	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C2, whole genome shotgun sequence	ARAG01000014 ENA	WGS	3213	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C3, whole genome shotgun sequence	ARAG01000015 ENA	WGS	21366	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C4, whole genome shotgun sequence	ARAG01000016 ENA	WGS	27028	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C5, whole genome shotgun sequence	ARAG01000017 ENA	WGS	1395	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C6, whole genome shotgun sequence	ARAG01000018 ENA	WGS	26858	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C7, whole genome shotgun sequence	ARAG01000019 ENA	WGS	46320	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C8, whole genome shotgun sequence	ARAG01000020 ENA	WGS	94186	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C9, whole genome shotgun sequence	ARAG01000021 ENA	WGS	7767	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C10, whole genome shotgun sequence	ARAG01000022 ENA	WGS	38225	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C11, whole genome shotgun sequence	ARAG01000023 ENA	WGS	2500	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C12, whole genome shotgun sequence	ARAG01000024 ENA	WGS	66565	398525 tax ID	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Bradyrhizobium elkanii USDA 76 BraelDRAFT_scaffold2.2_C13, whole genome shotgun sequence	ARAG01000025 ENA	WGS	29130	398525 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 DnaK (dnaK) gene, partial cds	AY328392 ENA		603	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 ATP synthase beta subunit (atpD) gene, partial cds	AY386758 ENA		483	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA76 recombination protein A (recA) gene, partial cds	AY591568 ENA		511	398525 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 glutamine synthetase isoform II (glnII) gene, partial cds	AY599117 ENA		594	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 RNA polymerase beta subunit (rpoB) gene, partial cds	EF190188 ENA		771	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 N-acetylglucosaminyltransferase (nodC) gene, partial cds	HQ233221 ENA		539	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 16S ribosomal RNA gene, partial sequence	HQ233240 ENA	16S	1340	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 DNA topoisomerase IV subunit B (gyrB) gene, partial cds	JN685726 ENA		438	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 GTP-binding membrane protein (lepA) gene, partial cds	JN685774 ENA		434	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 aspartate semialdehyde dehydrogenase (asd) gene, partial cds	JN685822 ENA		434	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	JN685874 ENA		446	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 acetolactate synthase (ilvI) gene, partial cds	JN685929 ENA		375	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 malate dehydrogenase (mdh) gene, partial cds	JN685981 ENA		451	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) gene, partial cds	JN686031 ENA		394	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 50S ribosomal protein L3 (rplC) gene, partial cds	JN993851 ENA		432	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii N-acetylglucosaminyltransferase (nodC) gene, partial cds	JN993940 ENA		644	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 nodulation protein D1 (nodD1) gene, partial cds; NodK (nodK) gene, complete cds; and acyl transferase (nodA) gene, partial cds	JQ911633 ENA		1276	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii hypothetical protein (SMc00019) gene, partial cds	JX064205 ENA		309	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii TruA (truA) gene, partial cds	JX064277 ENA		492	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii ThrA (thrA) gene, partial cds	JX064349 ENA		491	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii nodulation protein acetyl transferase (nolL) gene, partial cds	KC527009 ENA		637	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 dinitrogenase alpha subunit (nifD) gene, partial cds	KF532341 ENA		822	29448 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii strain USDA 76 recombination protein A (recA) gene, partial cds	KF532941 ENA		513	29448 tax ID	*
[Ref.: #20218]	INSDC Sequence	Bradyrhizobium japonicum (USDA 76) 16S ribosomal RNA (partial)	M55490 ENA	16S	264	375 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bradyrhizobium elkanii 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, complete sequence	U35000 ENA	16S	5136	29448 tax ID	*

Availability in culture collectionsStrain availability

[Ref.: #4416]

Culture collection no.

DSM 11554, ATCC 49852

[Ref.: #4416]

Strain history

<- ATCC <- L. D. Kuykendall, USDA 76

[Ref.: #20218]

Associated Passport(s) in StrainInfo

162736, 5815

References

#4416

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11554

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

* These References are textmined

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