Bradyrhizobium canariense (DSM 16623, ATCC BAA-1002, CFNE 1008)

Name: Bradyrhizobium canariense (DSM 16623, ATCC BAA-1002, CFNE 1008)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1812

Type strain

Strain Designation BTA-1

Culture col. no. DSM 16623 ATCC BAA-1002 CFNE 1008 LMG 22265 BTA-1

NCBI tax ID(s) 255045

Special Collections DSMZ Literature strains

Links

Bradyrhizobium canariense BTA-1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from root nodules of Chamaecytisus proliferus subsp. proliferus var. palmensis .

Gram-negative motile aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 136005

LMG 22265,ATCC BAA-1002,DSM 16623,CECT 7140,NBRC 103049

@ref 20215

Last LPSN update 2025-12-16 09:47:11

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Nitrobacteraceae

Genus Bradyrhizobium

Species Bradyrhizobium canariense

Full scientific name Bradyrhizobium canariense Vinuesa et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Motility	Flagellum arrangement	Confidence
23327	negative		monotrichous, polar
125438	negative			97.285

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
23327	1-1.5 mm	white, creamy	7 days	YMA (pH 6.8)

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6530	RHIZOBIUM MEDIUM (DSMZ Medium 98)		Medium recipe at MediaDive	Name: RHIZOBIUM MEDIUM (DSMZ Medium 98) Composition: air-dried garden soil 80.0 g/l Agar 15.0 g/l Mannitol 10.0 g/l Yeast extract 1.0 g/l Na2CO3 0.2 g/l Distilled water
23326	YMA (pH 6.8)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6530	positive	growth	30	mesophilic
23327	negative	growth	37
23327	positive	optimum	28-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
23327	positive	growth	9	alkaliphile

Physiology and metabolism

Oxygen tolerance

23327

Oxygen toleranceaerobe

Spore formation

23327

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
23327	NaCl	positive	growth	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
23327	18135 ChEBI	catechol	-	carbon source
23327	16947 ChEBI	citrate	+	carbon source
23327	17108 ChEBI	D-arabinose	+	carbon source
23327	15824 ChEBI	D-fructose	+	carbon source
23327	12936 ChEBI	D-galactose	+	carbon source
23327	17634 ChEBI	D-glucose	+	carbon source
23327	16024 ChEBI	D-mannose	+	carbon source
23327	16988 ChEBI	D-ribose	+	carbon source
23327	16551 ChEBI	D-trehalose	-	carbon source
23327	65327 ChEBI	D-xylose	+	carbon source
23327	29806 ChEBI	fumarate	+	carbon source
23327	17754 ChEBI	glycerol	+	carbon source
23327	15428 ChEBI	glycine	-	nitrogen source
23327	15443 ChEBI	inulin	-	carbon source
23327	18050 ChEBI	L-glutamine	+	nitrogen source
23327	62345 ChEBI	L-rhamnose	+	carbon source
23327	17266 ChEBI	L-sorbose	-	carbon source
23327	17716 ChEBI	lactose	-	carbon source
23327	29864 ChEBI	mannitol	+	carbon source
23327	28053 ChEBI	melibiose	-	carbon source
23327	30911 ChEBI	sorbitol	+	carbon source
23327	28017 ChEBI	starch	-	carbon source
23327	30031 ChEBI	succinate	+	carbon source
23327	17992 ChEBI	sucrose	-	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
6530	root nodules of Chamaecytisus proliferus subsp. proliferus var. palmensis (Papilionoideae: Genisteae)	Chamaecytisus proliferus subsp. proliferus	Canary Islands, Tenerife, La Laguna	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ558025 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	2827
Soil Samples	5001
Animal Samples	4320
Plant Samples	739
Total Samples	12887

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6530	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1940266v1 assembly for Bradyrhizobium canariense BTA-1	scaffold	GCA_019402665	255045.55	8111237426	255045	46.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23327	Bradyrhizobium canariense 16S ribosomal RNA gene, partial sequence	AY577427	1481		255045
6530	Bradyrhizobium sp. BTA-1 partial 16S rRNA gene, strain BTA-1	AJ558025	1481		255045

GC content

6530

GC-content (mol%)63.8

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bradyrhizobium canariense BTA-1
NCBI: GCA_019402665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.29	no
125438	anaerobic	anaerobicⓘ	no	91.03	no
125438	aerobic	aerobicⓘ	yes	84.27	yes
125438	spore-forming	spore-formingⓘ	no	86.20	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	yes	76.41	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The Fodder Legume Chamaecytisus albidus Establishes Functional Symbiosis with Different Bradyrhizobial Symbiovars in Morocco.	Bouhnik O, Alami S, Lamin H, Lamrabet M, Bennis M, Ouajdi M, Bellaka M, Antri SE, Abbas Y, Abdelmoumen H, Bedmar EJ, Idrissi MME	Microb Ecol	10.1007/s00248-021-01888-4	2021
Phylogeny	New chromosomal lineages within Microvirga and Bradyrhizobium genera nodulate Lupinus angustifolius growing on different Tunisian soils.	Rejili M, Msaddak A, Filali I, Benabderrahim MA, Mars M, Marin M	FEMS Microbiol Ecol	10.1093/femsec/fiz118	2019
Phylogeny	Revision of the taxonomic status of the species Rhizobium lupini and reclassification as Bradyrhizobium lupini comb. nov.	Peix A, Ramirez-Bahena MH, Flores-Felix JD, Alonso de la Vega P, Rivas R, Mateos PF, Igual JM, Martinez-Molina E, Trujillo ME, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.000082	2015
Phylogeny	Bradyrhizobium hipponense sp. nov., isolated from Lupinus angustifolius growing in the northern region of Tunisia.	Rejili M, Off K, Brachmann A, Marin M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004445	2020
Phylogeny	Bradyrhizobium cytisi sp. nov., isolated from effective nodules of Cytisus villosus.	Chahboune R, Carro L, Peix A, Barrijal S, Velazquez E, Bedmar EJ	Int J Syst Evol Microbiol	10.1099/ijs.0.027649-0	2011
Phylogeny	Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta.	Vinuesa P, Leon-Barrios M, Silva C, Willems A, Jarabo-Lorenzo A, Perez-Galdona R, Werner D, Martinez-Romero E	Int J Syst Evol Microbiol	10.1099/ijs.0.63292-0	2005

References

#6530	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16623
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23326	Irina S. Kulichevskaya, Vladimir S. Guzev, Vladimir M. Gorlenko, Werner Liesack, Svetlana N. Dedysh: Rhodoblastus sphagnicola sp. nov., a novel acidophilic purple non-sulfur bacterium from Sphagnum peat bog. IJSEM 56: 1397 - 1402 2006 ( DOI 10.1099/ijs.0.63962-0 , PubMed 16738120 )
#23327	Pablo Vinuesa, Milagros León-Barrios, Claudia Silva, Anne Willems, Adriana Jarabo-Lorenzo, Ricardo Pérez-Galdona, Dietrich Werner, Esperanza Martínez-Romero: Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. IJSEM 55: 569 - 575 2005 ( DOI 10.1099/ijs.0.63292-0 , PubMed 15774626 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bradyrhizobium canariense (DSM 16623, ATCC BAA-1002, CFNE 1008)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019402665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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