Name: Schaalia funkei Hudd B9912678
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 181

Type strain:

Species: Schaalia funkei

Strain Designation: Hudd B9912678

Culture col. no.: DSM 15537, CCUG 42773, CIP 106713, KCTC 15233

Strain history: CIP <- 2000, CCUG <- 1999, Jakalas/Vincent, PHLS, Huddinge, Sweden

NCBI tax ID(s): 132933 (species)

SI-ID 87791

CCUG 42773, CIP 106713, DSM 15537

Special Collections

Other strains from Schaalia funkei

Section

Schaalia funkei Hudd B9912678 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from human blood, endocarditis.

Gram-positive
rod-shaped
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Actinomycetales*
	Family	*Actinomycetaceae*
	Genus	*Schaalia*
	Species	**Schaalia funkei**
	Full Scientific Name (LPSN)	Schaalia funkei (Lawson et al. 2001) Nouioui et al. 2018

Synonym

Actinomyces funkei

Information on morphological and physiological properties Morphology

[Ref.: #23117]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #119495]	Gram stain	positive

[Ref.: #23117]	Cell shape	rod-shaped
[Ref.: #119495]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	curved-shaped

[Ref.: #119495]	Motility	no

[Ref.: #23117]	Type of hemolysis	gamma
[Ref.: #23117]	Colony size	<1.0 mm
[Ref.: #23117]	Colony color	grey
[Ref.: #23117]	Incubation period	1 day
[Ref.: #23117]	Cultivation medium used	Columbia blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5986]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #5986]

Culture medium growth

[Ref.: #5986]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5986]

Culture medium composition

expand / minimize

[Ref.: #5986]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #5986]

Culture medium growth

[Ref.: #5986]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5986]

Culture medium composition

expand / minimize

[Ref.: #23117]

Culture medium

Columbia blood agar

[Ref.: #23117]

Culture medium growth

[Ref.: #36419]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #36419]

Culture medium growth

[Ref.: #36419]

Culture medium composition

expand / minimize

[Ref.: #119495]

Culture medium

CIP Medium 6

[Ref.: #119495]

Culture medium growth

[Ref.: #119495]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5986]		growth	37 °C
[Ref.: #36419]		growth	37 °C
[Ref.: #55553]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #119495]		growth	30-41 °C
[Ref.: #119495]	no	growth	10 °C
[Ref.: #119495]	no	growth	25 °C
[Ref.: #119495]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5986]	Oxygen tolerance	microaerophile
[Ref.: #23117]	Oxygen tolerance	facultative anaerobe
[Ref.: #55553]	Oxygen tolerance	anaerobe
[Ref.: #55553]	Oxygen tolerance	microaerophile
[Ref.: #67771]	Oxygen tolerance	microaerophile
[Ref.: #119495]	Oxygen tolerance	facultative anaerobe

[Ref.: #23117]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Salt	Tested relation		Salt conc.
[Ref.: #119495]	NaCl		growth	0-6	%
[Ref.: #119495]	NaCl	no	growth	8	%
[Ref.: #119495]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23117]	acetoin ChEBI	-	other
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #119495]	citrate ChEBI	-	carbon source
[Ref.: #23117]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #23117]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	D-glucose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68379]	D-ribose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	D-xylose ChEBI	+	builds acid from
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #23117]	esculin ChEBI	-	hydrolysis
[Ref.: #119495]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23117]	gelatin ChEBI	-	hydrolysis
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #23117]	glucose ChEBI	+	builds acid from
[Ref.: #23117]	glycogen ChEBI	-	builds acid from
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #23117]	hippurate ChEBI	+	hydrolysis
[Ref.: #119495]	hippurate ChEBI	+	hydrolysis
[Ref.: #68381]	hippurate ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #23117]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #23117]	lactose ChEBI	+/-	builds acid from
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	maltose ChEBI	+/-	builds acid from
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68381]	maltose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	mannitol ChEBI	-	builds acid from
[Ref.: #23117]	melezitose ChEBI	-	builds acid from
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	melibiose ChEBI	-	builds acid from
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	nitrate ChEBI	+/-	reduction
[Ref.: #119495]	nitrate ChEBI	+	reduction
[Ref.: #119495]	nitrate ChEBI	+	respiration
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #119495]	nitrite ChEBI	-	reduction
[Ref.: #23117]	pullulan ChEBI	-	builds acid from
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	raffinose ChEBI	-	builds acid from
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #23117]	ribose ChEBI	+/-	builds acid from
[Ref.: #23117]	sorbitol ChEBI	-	builds acid from
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #23117]	starch ChEBI	-	hydrolysis
[Ref.: #23117]	sucrose ChEBI	+	builds acid from
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #23117]	tagatose ChEBI	-	builds acid from
[Ref.: #23117]	trehalose ChEBI	-	builds acid from
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne, API rID32A, API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119495]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #119495]	indole ChEBI	no
[Ref.: #68381]	acetoin ChEBI	no	* from API rID32STR
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119495]	acetoin ChEBI	-
[Ref.: #119495]	glucose ChEBI		-
[Ref.: #68381]	acetoin ChEBI	-			* from API rID32STR
[Ref.: #68380]	indole ChEBI			-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #23117]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #119495]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #23117]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API rID32STR, API rID32A, API Coryne
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #23117]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #23117]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32STR, API rID32A
[Ref.: #23117]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A, API Coryne
[Ref.: #23117]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23117]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #23117]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #119495]	beta-galactosidase	+	3.2.1.23
[Ref.: #68381]	beta-galactosidase	+	3.2.1.23	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #23117]	beta-glucosidase	-	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32STR, API rID32A, API Coryne
[Ref.: #23117]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32STR, API rID32A, API Coryne
[Ref.: #23117]	beta-mannosidase	-	3.2.1.25
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #119495]	caseinase	-	3.4.21.50
[Ref.: #23117]	catalase	-	1.11.1.6
[Ref.: #119495]	catalase	-	1.11.1.6
[Ref.: #68379]	catalase	-	1.11.1.6	* from API Coryne
[Ref.: #23117]	chymotrypsin	-	3.4.4.5
[Ref.: #23117]	cystine arylamidase	+	3.4.11.3
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #23117]	esterase (C 4)	-
[Ref.: #23117]	esterase lipase (C 8)	-
[Ref.: #119495]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119495]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	+		* from API rID32A
[Ref.: #23117]	glycyl tryptophan arylamidase	-
[Ref.: #68381]	glycyl tryptophan arylamidase	-		* from API rID32STR
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #23117]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #23117]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119495]	lysine decarboxylase	-	4.1.1.18
[Ref.: #23117]	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API rID32A, API Coryne
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32STR
[Ref.: #119495]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119495]	oxidase	-
[Ref.: #119495]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68380]	phenylalanine arylamidase	+		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #23117]	pyrazinamidase	+/-	3.5.1.B15
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #23117]	pyroglutamic acid arylamidase	-
[Ref.: #23117]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR, API rID32A, API Coryne
[Ref.: #68380]	serine arylamidase	+		* from API rID32A
[Ref.: #23117]	tripeptide aminopeptidase	+	3.4.11.4
[Ref.: #23117]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119495]	tryptophan deaminase	-
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #23117]	urease	-	3.5.1.5
[Ref.: #119495]	urease	-	3.5.1.5
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR, API rID32A, API Coryne
[Ref.: #23117]	valine arylamidase	-
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #55553]

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	31.7	17.724
C16:0	26.1	16
C18:1 ω9c	22	17.769
C18:0	15.8	18
C16:1 ω7c	2.4	15.819
C14:0	2.1	14

Metadata FA analysis

Reference

[Ref.: #55553]

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	28.8	17.724
C18:0	24.5	18
C16:0	23	16
C18:1 ω9c	20.5	17.769
C16:1 ω7c	1.3	15.819
C17:0	1	17
C14:0	1	14

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #55553]	2571	+	+	-	+	-	+	+	+	-	-	-	-	+	+	+	-	+	+	+	-	-

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #55553]	4152	-	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	+	+	-	+	+	-	+	+	+	+	-	+

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #55553]	4628	-	-	+	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #55553]	3075	-	+	-	-	-	+	-	+	-	-	+	-	-	-	-	+	-	+	-	-
[Ref.: #119495]	9745	-	+	+	+	-	+	-	+	-	-	+	+	-	+	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5986]	Sample type/isolated from	human blood, endocarditis
[Ref.: #5986]	Geographic location (country and/or sea, region)	Huddinge
[Ref.: #5986]	Country	Sweden
[Ref.: #5986]	Country ISO 3 Code	SWE
[Ref.: #5986]	Continent	Europe

[Ref.: #23117]	Sample type/isolated from	40-year-old female intravenous drug user with Staphylococcus aureus endocarditis

[Ref.: #55553]	Sample type/isolated from	Human blood,endocarditis,clinically documented
[Ref.: #55553]	Sampling date	1999-09-21
[Ref.: #55553]	Geographic location (country and/or sea, region)	Huddinge
[Ref.: #55553]	Country	Sweden
[Ref.: #55553]	Country ISO 3 Code	SWE
[Ref.: #55553]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From human blood, endocarditis, clinically documented
[Ref.: #67771]	Geographic location (country and/or sea, region)	Huddinge
[Ref.: #67771]	Country	Sweden
[Ref.: #67771]	Country ISO 3 Code	SWE
[Ref.: #67771]	Continent	Europe

[Ref.: #119495]	Sample type/isolated from	Human, Blood
[Ref.: #119495]	Geographic location (country and/or sea, region)	Huddinge
[Ref.: #119495]	Country	Sweden
[Ref.: #119495]	Country ISO 3 Code	SWE
[Ref.: #119495]	Continent	Europe
[Ref.: #119495]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Patient	-
#Host	#Human	#Female
#Infection	#Inflammation	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_028960 (>99% sequence identity) for Actinomyces from Microbeatlas

Aquatic Samples	62
Soil Samples	9
Animal Samples	1196
Plant Samples	9
Total Samples	1276

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5986]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119495]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5986]	Actinomyces funkeii partial 16S rRNA gene, strain CCUG 42773	AJ404889	1395	GenBank ENA	132933 tax ID
[Ref.: #67771]	Schaalia funkei strain CCUG 42773 16S ribosomal RNA, partial sequence	NR_028960	1366	GenBank ENA	132933 tax ID

Availability in culture collections External links

[Ref.: #5986]

Culture collection no.

DSM 15537, CCUG 42773, CIP 106713, KCTC 15233

[Ref.: #69863]

SI-ID 87791

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomyces funkei sp. nov., isolated from human clinical specimens.	Lawson PA, Nikolaitchouk N, Falsen E, Westling K, Collins MD	Int J Syst Evol Microbiol	10.1099/00207713-51-3-853	2001	*

References

#5986

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15537

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23117

P A Lawson, N Nikolaitchouk, E Falsen, K Westling, M D Collins: Actinomyces funkei sp. nov., isolated from human clinical specimens.. IJSEM 51: 853 - 855 2001 ( DOI 10.1099/00207713-51-3-853 , PubMed 11411706 )

#36419 ; Curators of the CIP;
#55553 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42773
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68380

Automatically annotated from API rID32A .

#68381

Automatically annotated from API rID32STR .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69863

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87791.1 )

#119495 Collection of Institut Pasteur ; Curators of the CIP; CIP 106713
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Schaalia funkei in external resources:
SILVA
BRENDA
PANGAEA
GBIF