Blautia schinkii (DSM 10518, B, CIP 105464)

Name: Blautia schinkii (DSM 10518, B, CIP 105464)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 18072

Type strain

Strain Designation B

Culture col. no. DSM 10518 B CIP 105464 CCUG 53897 JCM 14657 1 more

NCBI tax ID(s) 1410649 180164

Special Collections DSMZ CCUG JCM CIP KCTC

History <- F. Rieu-Lesme; B DSM 10518 <-- F. Rieu-Lesme strain B. CIP <- 1998, F. Rieu-Lesme, INRA, St.-Genes-Champanelle, France: strain B

Links

Blautia schinkii B is an anaerobe, Gram-positive, oval-shaped bacterium that was isolated from rumen of suckling lamb.

Gram-positive oval-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48844

DSM 10518,CIP 105464,CCUG 53897,JCM 14657,KCTC 5953

@ref 20215

Last LPSN update 2026-02-09 11:22:22

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Blautia

Species Blautia schinkii

Full scientific name Blautia schinkii (Rieu-Lesme et al. 1997) Liu et al. 2008

Synonyms (1)

Ruminococcus schinkii

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122506	positive	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3960	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
35824	MEDIUM 397 - for Ruminococcus shinkii		Distilled water make up to (1000.000 ml);Maltose (1.000 g);Glucose (4.000 g);Yeast extract (5.000 g);Resazurin (1.000 mg);Cooked meat medium (125.000 g);Cellobiose (1.000 g);Starch maize (1.000 g);Cysteine hydrochloride (0.500 g);Di Potassium monohydrogen
122506	CIP Medium 397	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3960	positive	growth	37
35824	positive	growth	37
67770	positive	growth	37
122506	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3960	anaerobe
125439	anaerobe	99.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68380	35581 ChEBI	indole	from API rID32A
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68380	35581 ChEBI	indole		-	from API rID32A
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
3960	+	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
3960	-	-	+	+	-	+	+	+	-	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3960	rumen of suckling lamb	France, Clermont-Ferrand-Theix	France	FRA	Europe
67770	Rumen of suckling lambs
122506	Suckling lamb, rumen

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3960	1	Risk group (German classification) According to TRBA 466
122506	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM70202v1 assembly for Blautia schinkii DSM 10518	scaffold	GCA_000702025	1410649.3	2561511230	1410649	37.23
66792	ASM2853919v1 assembly for Blautia schinkii DSM 10518	scaffold	GCA_028539195	180164.19		180164	34.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Blautia schinkii 16S rRNA gene, strain Bie 41	X94964	1482		180164
3960	Ruminococcus schinkii 16S ribosomal RNA (strain B; CIP 105464; DSM 10518)	X94965	1482		180164

GC content

@ref	GC-content (mol%)
3960	46
67770	46.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Blautia schinkii DSM 10518
NCBI: GCA_000702025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	61.40	no
125439	motility	BacteriaNetⓘ	yes	67.20	no
125439	gram_stain	BacteriaNetⓘ	variable	72.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Blautia schinkii DSM 10518
PATRIC: 1410649.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	73.52	no
125438	anaerobic	anaerobicⓘ	yes	85.82	no
125438	spore-forming	spore-formingⓘ	yes	54.63	no
125438	thermophilic	thermophileⓘ	no	94.55	yes
125438	aerobic	aerobicⓘ	no	92.19	no
125438	flagellated	motile2+ⓘ	no	62.75	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization of antibiotic resistance genes in the species of the rumen microbiota.	Sabino YNV, Santana MF, Oyama LB, Santos FG, Moreira AJS, Huws SA, Mantovani HC.	Nat Commun	10.1038/s41467-019-13118-0	2019
Phylogeny	Blautia-a new functional genus with potential probiotic properties?	Liu X, Mao B, Gu J, Wu J, Cui S, Wang G, Zhao J, Zhang H, Chen W.	Gut Microbes	10.1080/19490976.2021.1875796	2021
	Phylogenetic diversity of core rumen microbiota as described by cryo-ET.	Wimmer BH, Morais S, Zalk R, Mizrahi I, Medalia O.	Microlife	10.1093/femsml/uqad010	2023
Metabolism	Can rumen bacteria communicate to each other?	Won MY, Oyama LB, Courtney SJ, Creevey CJ, Huws SA.	Microbiome	10.1186/s40168-020-00796-y	2020
	Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes.	Azevedo AC, Bento CB, Ruiz JC, Queiroz MV, Mantovani HC.	Appl Environ Microbiol	10.1128/aem.01223-15	2015
Metabolism	The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria.	Kremp F, Roth J, Muller V.	Sci Rep	10.1038/s41598-020-71038-2	2020
Enzymology	Energy-converting hydrogenases: the link between H₂ metabolism and energy conservation.	Schoelmerich MC, Muller V.	Cell Mol Life Sci	10.1007/s00018-019-03329-5	2020
Phylogeny	Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach.	Gagen EJ, Denman SE, Padmanabha J, Zadbuke S, Al Jassim R, Morrison M, McSweeney CS.	Appl Environ Microbiol	10.1128/aem.01679-10	2010
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018
Enzymology	Spatial organization of intestinal microbiota in the mouse ascending colon.	Nava GM, Friedrichsen HJ, Stappenbeck TS.	ISME J	10.1038/ismej.2010.161	2011

References

#3960	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10518
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35824	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68380	Automatically annotated from API rID32A .
#122506	Collection of Institut Pasteur ; Curators of the CIP; CIP 105464
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Blautia schinkii (DSM 10518, B, CIP 105464)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000702025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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