Name: Blautia schinkii B
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18072

Type strain:

Species: Blautia schinkii

Strain Designation: B

Culture col. no.: DSM 10518, JCM 14657, CCUG 53897, CIP 105464, KCTC 5953

Strain history: CIP <- 1998, F. Rieu-Lesme, INRA, St.-Genes-Champanelle, France: strain B

NCBI tax ID(s): 1410649 (strain), 180164 (species)

SI-ID 48844

DSM 10518, CIP 105464, CCUG 53897, JCM 14657, KCTC 5953

Special Collections

Section

Blautia schinkii B is an anaerobe, Gram-positive, oval-shaped bacterium that was isolated from rumen of suckling lamb.

Gram-positive
oval-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Blautia*
	Species	**Blautia schinkii**
	Full Scientific Name (LPSN)	Blautia schinkii (Rieu-Lesme et al. 1997) Liu et al. 2008

Synonym

Ruminococcus schinkii

Information on morphological and physiological properties Morphology

[Ref.: #122506]	Gram stain	positive

[Ref.: #122506]	Cell shape	oval-shaped

[Ref.: #122506]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3960]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #3960]

Culture medium growth

[Ref.: #3960]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3960]

Culture medium composition

expand / minimize

[Ref.: #35824]

Culture medium

MEDIUM 397 - for Ruminococcus shinkii

[Ref.: #35824]

Culture medium growth

[Ref.: #35824]

Culture medium composition

expand / minimize

[Ref.: #122506]

Culture medium

CIP Medium 397

[Ref.: #122506]

Culture medium growth

[Ref.: #122506]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3960]	growth	37 °C
[Ref.: #35824]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #122506]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3960]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E, API rID32A
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E, API rID32A

	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]	acetoin ChEBI	-		* from API 20E
[Ref.: #68368]	indole ChEBI		+	* from API 20E
[Ref.: #68380]	indole ChEBI		-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A, API 20E
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A, API 20E
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A, API 20E
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #3960]	17525	+	-	-	-	-	-	-	-	+	-	-	+	+	-	+	+	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #3960]	12590	-	-	+	+	-	+	+	+	-	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3960]	Sample type/isolated from	rumen of suckling lamb
[Ref.: #3960]	Geographic location (country and/or sea, region)	France, Clermont-Ferrand-Theix
[Ref.: #3960]	Country	France
[Ref.: #3960]	Country ISO 3 Code	FRA
[Ref.: #3960]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Rumen of suckling lambs

[Ref.: #122506]	Sample type/isolated from	Suckling lamb, rumen
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3960]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122506]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3960]	Ruminococcus schinkii 16S ribosomal RNA (strain B; CIP 105464; DSM 10518)	X94965	1482	GenBank ENA	180164 tax ID
[Ref.: #20218]	Blautia schinkii 16S rRNA gene, strain Bie 41	X94964	1482	GenBank ENA	180164 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Blautia schinkii DSM 10518	GCA_000702025	scaffold	GenBank ENA	1410649 tax ID
[Ref.: #66792]	Blautia schinkii DSM 10518	1410649.3	wgs	PATRIC	1410649 tax ID	*
[Ref.: #66792]	Blautia schinkii DSM 10518	2561511230	draft	JGI IMG/M	1410649 tax ID	*
[Ref.: #66792]	Blautia schinkii DSM 10518	GCA_028539195	scaffold	GenBank ENA	180164 tax ID	*

[Ref.: #3960]	GC-content	46 mol%
[Ref.: #67770]	GC-content	46.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Blautia schinkii DSM 10518 DSM 10518 NCBI: GCA_000702025.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	70	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Blautia schinkii DSM 10518 PATRIC: 1410649.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	73.517	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.815	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	54.629	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.548	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.194	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	62.746	no

Availability in culture collections External links

[Ref.: #3960]

Culture collection no.

DSM 10518, JCM 14657, CCUG 53897, CIP 105464, KCTC 5953

[Ref.: #87060]

SI-ID 48844

References

#3960

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10518

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35824 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87060

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48844.1 )

#122506 Collection of Institut Pasteur ; Curators of the CIP; CIP 105464
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Blautia schinkii in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Blautia schinkii DSM 10518 DSM 10518

Blautia schinkii DSM 10518

Change proposal

Change proposal