Strain identifier

BacDive ID: 18072

Type strain: Yes

Species: Blautia schinkii

Strain Designation: B

Strain history: CIP <- 1998, F. Rieu-Lesme, INRA, St.-Genes-Champanelle, France: strain B

NCBI tax ID(s): 1410649 (strain), 180164 (species)

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General

@ref: 3960

BacDive-ID: 18072

DSM-Number: 10518

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Blautia schinkii B is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from rumen of suckling lamb.

NCBI tax id

NCBI tax idMatching level
1410649strain
180164species

strain history

@refhistory
3960<- F. Rieu-Lesme; B
67770DSM 10518 <-- F. Rieu-Lesme strain B.
122506CIP <- 1998, F. Rieu-Lesme, INRA, St.-Genes-Champanelle, France: strain B

doi: 10.13145/bacdive18072.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Blautia
  • species: Blautia schinkii
  • full scientific name: Blautia schinkii (Rieu-Lesme et al. 1997) Liu et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Ruminococcus schinkii

@ref: 3960

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Blautia

species: Blautia schinkii

full scientific name: Blautia schinkii (Rieu-Lesme et al. 1997) Liu et al. 2008

strain designation: B

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
122506positiveoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3960CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
35824MEDIUM 397 - for Ruminococcus shinkiiyesDistilled water make up to (1000.000 ml);Maltose (1.000 g);Glucose (4.000 g);Yeast extract (5.000 g);Resazurin (1.000 mg);Cooked meat medium (125.000 g);Cellobiose (1.000 g);Starch maize (1.000 g);Cysteine hydrochloride (0.500 g);Di Potassium monohydrogen
122506CIP Medium 397yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=397

culture temp

@refgrowthtypetemperaturerange
3960positivegrowth37mesophilic
35824positivegrowth37mesophilic
67770positivegrowth37mesophilic
122506positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
3960anaerobe
69480anaerobe99.587

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6838035581indole-
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3960+-------+--++-++---+-

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
3960--++-+++-+/----+/----------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3960rumen of suckling lambFrance, Clermont-Ferrand-TheixFranceFRAEurope
67770Rumen of suckling lambs
122506Suckling lamb, rumen

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Organ#Rumen

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
39601Risk group (German classification)
1225061Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Blautia schinkii 16S rRNA gene, strain Bie 41X949641482ena180164
3960Ruminococcus schinkii 16S ribosomal RNA (strain B; CIP 105464; DSM 10518)X949651482ena180164

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Blautia schinkii DSM 105181410649.3wgspatric1410649
66792Blautia schinkii DSM 105182561511230draftimg1410649
67770Blautia schinkii DSM 10518GCA_000702025scaffoldncbi1410649
66792Blautia schinkii DSM 10518GCA_028539195scaffoldncbi180164

GC content

@refGC-content
396046
6777046.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes70no
motileno79.256no
gram-positiveyes86.565no
anaerobicyes96.819yes
halophileno87.436no
spore-formingyes63.536no
glucose-utilyes91.469no
thermophileno99.753yes
aerobicno97.956yes
flagellatedno91.102no
glucose-fermentyes80.528yes

External links

@ref: 3960

culture collection no.: DSM 10518, JCM 14657, CCUG 53897, CIP 105464, KCTC 5953

straininfo link

  • @ref: 87060
  • straininfo: 48844

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3960Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10518)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10518
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35824Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17486
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
87060Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48844.1StrainInfo: A central database for resolving microbial strain identifiers
122506Curators of the CIPCollection of Institut Pasteur (CIP 105464)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105464