Name: Fusibacter paucivorans DSM 12116
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 18032

Type strain:

Species: Fusibacter paucivorans

Culture col. no.: DSM 12116, SEBR 4211, ATCC 700852

Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; SEBR 4211 <- M. Magot and G. Ravot {1996}

NCBI tax ID(s): 1121908 (strain), 76009 (species)

SI-ID 44177

ATCC 700852, DSM 12116

Special Collections

DSMZ

Section

Fusibacter paucivorans DSM 12116 is an anaerobe bacterium that was isolated from reservoir water sample from an offshore oil-producing well.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	[Eubacteriales, not assigned to family]
	Genus	*Fusibacter*
	Species	**Fusibacter paucivorans**
	Full Scientific Name (LPSN)	Fusibacter paucivorans Ravot et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4605]

Culture medium

FUSIBACTER PAUCIVORANS MEDIUM (DSMZ Medium 853)

[Ref.: #4605]

Culture medium growth

[Ref.: #4605]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4605]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4605]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4605]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %90.363

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4605]	Sample type/isolated from	reservoir water sample from an offshore oil-producing well
[Ref.: #4605]	Geographic location (country and/or sea, region)	Emeraude oil field
[Ref.: #4605]	Country	Republic of the Congo
[Ref.: #4605]	Country ISO 3 Code	COG
[Ref.: #4605]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF050099 (>99% sequence identity) for Fusibacter paucivorans subclade from Microbeatlas

Aquatic Samples	63
Soil Samples	4
Animal Samples	92
Plant Samples
Total Samples	159

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4605]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4605]	Fusibacter paucivorans 16S ribosomal RNA gene, partial sequence	AF050099	1525	GenBank ENA	76009 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fusibacter paucivorans DSM 12116	GCA_018390735	scaffold	GenBank ENA	76009 tax ID	*
[Ref.: #66792]	Fusibacter paucivorans strain DSM 12116	76009.3	wgs	PATRIC	76009 tax ID	*

[Ref.: #4605]

GC-content

43 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fusibacter paucivorans DSM 12116 NCBI: GCA_018390735.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fusibacter paucivorans DSM 12116 NCBI: GCA_018390735.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	54.208	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.363	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.468	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	55.641	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.187	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.225	no

Availability in culture collections External links

[Ref.: #4605]

Culture collection no.

DSM 12116, SEBR 4211, ATCC 700852

[Ref.: #87021]

SI-ID 44177

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fusibacter paucivorans gen. nov., sp. nov., an anaerobic, thiosulfate-reducing bacterium from an oil-producing well.	Ravot G, Magot M, Fardeau ML, Patel BK, Thomas P, Garcia JL, Ollivier B	Int J Syst Bacteriol	10.1099/00207713-49-3-1141	1999	*
Phylogeny	Fusibacter ferrireducens sp. nov., an anaerobic, Fe()- and sulphur-reducing bacterium isolated from mangrove sediment.	Qiu D, Zeng X, Zeng L, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004952	2021	*

References

#4605

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12116

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87021

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44177.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Fusibacter paucivorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF