Archive BacDiveID:10.13145/bacdive18032.20240916.9.1

Strain identifier

BacDive ID: 18032

Type strain:

Species: Fusibacter paucivorans

Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; SEBR 4211 <- M. Magot and G. Ravot {1996}

NCBI tax ID(s): 1121908 (strain), 76009 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4605

BacDive-ID: 18032

DSM-Number: 12116

keywords: genome sequence, 16S sequence, Bacteria, anaerobe

description: Fusibacter paucivorans DSM 12116 is an anaerobe bacterium that was isolated from reservoir water sample from an offshore oil-producing well.

NCBI tax id

NCBI tax id	Matching level
1121908	strain
76009	species

strain history

@ref: 4605
history: <- J.-L. Garcia, Université de Provence, Marseille, France; SEBR 4211 <- M. Magot and G. Ravot {1996}

doi: 10.13145/bacdive18032.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Eubacteriales, not assigned to family
genus: Fusibacter
species: Fusibacter paucivorans
full scientific name: Fusibacter paucivorans Ravot et al. 1999

@ref: 4605

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridia, not assigned to family

genus: Fusibacter

species: Fusibacter paucivorans

full scientific name: Fusibacter paucivorans Ravot et al. 1999

type strain: yes

Culture and growth conditions

culture medium

@ref: 4605
name: FUSIBACTER PAUCIVORANS MEDIUM (DSMZ Medium 853)
growth: yes
link: https://mediadive.dsmz.de/medium/853
composition: Name: FUSIBACTER MEDIUM (DSMZ Medium 853) Composition: D-Glucose 3.6 g/l Na2S2O3 x 5 H2O 3.16 g/l MgCl2 x 6 H2O 3.0 g/l Na2CO3 1.5 g/l KCl 1.0 g/l Yeast extract 1.0 g/l Trypticase peptone 1.0 g/l NH4Cl 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Na-acetate x 3 H2O 0.5 g/l KH2PO4 0.3 g/l K2HPO4 0.3 g/l Na2S x 9 H2O 0.3 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l Sodium resazurin 0.0005 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water

culture temp

@ref: 4605
growth: positive
type: growth
temperature: 37

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
4605	anaerobe
69480	anaerobe	90.363

spore formation

@ref: 69481
spore formation: no
confidence: 100

Isolation, sampling and environmental information

isolation

@ref: 4605
sample type: reservoir water sample from an offshore oil-producing well
geographic location: Emeraude oil field
country: Republic of the Congo
origin.country: COG
continent: Africa

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir
#Condition	#Saline

taxonmaps

@ref: 69479
File name: preview.99_130709.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_615;96_50897;97_65550;98_87496;99_130709&stattab=map
Last taxonomy: Fusibacter paucivorans subclade
16S sequence: AF050099
Sequence Identity:
Total samples: 159
soil counts: 4
aquatic counts: 63
animal counts: 92

Safety information

risk assessment

@ref: 4605
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 4605
description: Fusibacter paucivorans 16S ribosomal RNA gene, partial sequence
accession: AF050099
length: 1525
database: nuccore
NCBI tax ID: 76009

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Fusibacter paucivorans DSM 12116	GCA_018390735	scaffold	ncbi	76009
66792	Fusibacter paucivorans strain DSM 12116	76009.3	wgs	patric	76009

GC content

@ref: 4605
GC-content: 43
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69481	spore-forming	spore-forming	Ability to form endo- or exospores	no	100	no
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	54.208	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	yes	90.363	yes
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	no	95.468	yes
69480	spore-forming	spore-forming	Ability to form endo- or exospores	yes	55.641	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	87.187	no
69480	flagellated	motile2+	Ability to perform flagellated movement	yes	77.225	no

External links

@ref: 4605

culture collection no.: DSM 12116, SEBR 4211, ATCC 700852

straininfo link

@ref: 87021
straininfo: 44177

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	10425772	Fusibacter paucivorans gen. nov., sp. nov., an anaerobic, thiosulfate-reducing bacterium from an oil-producing well.	Ravot G, Magot M, Fardeau ML, Patel BK, Thomas P, Garcia JL, Ollivier B	Int J Syst Bacteriol	10.1099/00207713-49-3-1141	1999	Bacteria, Anaerobic/classification/cytology/isolation & purification/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genotype, Gram-Positive Bacteria/classification/cytology/isolation & purification/physiology, Molecular Sequence Data, Oxidation-Reduction, Petroleum, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Thiosulfates/metabolism, Water Microbiology	Genetics
Phylogeny	34739363	Fusibacter ferrireducens sp. nov., an anaerobic, Fe()- and sulphur-reducing bacterium isolated from mangrove sediment.	Qiu D, Zeng X, Zeng L, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004952	2021	Anaerobiosis, Bacterial Typing Techniques, Base Composition, China, Clostridiales/classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ferric Compounds, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfur, Sulfur-Reducing Bacteria/classification/isolation & purification, Wetlands	Enzymology

Reference

@id	authors	catalogue	doi/url	title
4605	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12116)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-12116
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
87021	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID44177.1	StrainInfo: A central database for resolving microbial strain identifiers