Name: Thiomonas bhubaneswarensis S10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17950

Type strain:

Species: Thiomonas bhubaneswarensis

Strain Designation: S10

Culture col. no.: DSM 18181, JCM 14806

Strain history: S. K. Das S10.

NCBI tax ID(s): 339866 (species)

Section

Thiomonas bhubaneswarensis S10 is an aerobe, Gram-negative, motile bacterium that was isolated from sediment of a hot sulfur spring.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Thiomonas*
	Species	**Thiomonas bhubaneswarensis**
	Full Scientific Name (LPSN)	Thiomonas bhubaneswarensis Panda et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29136]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #29136]	Cell length	1.73 µm

[Ref.: #29136]	Cell width	0.43 µm

[Ref.: #29136]	Cell shape	rod-shaped

[Ref.: #29136]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29136]	growth	25-45 °C
[Ref.: #29136]	optimum	33.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #29136]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29136]			optimum	7.72
[Ref.: #29136]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29136]

Oxygen tolerance

aerobe

[Ref.: #29136]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29136]	alanine ChEBI	+	carbon source
[Ref.: #29136]	fructose ChEBI	+	carbon source
[Ref.: #29136]	glutamate ChEBI	+	carbon source
[Ref.: #29136]	nitrate ChEBI	+	reduction
[Ref.: #29136]	proline ChEBI	+	carbon source
[Ref.: #29136]	pyruvate ChEBI	+	carbon source
[Ref.: #29136]	serine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29136]		catalase	+	1.11.1.6
[Ref.: #29136]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7413]	Sample type/isolated from	sediment of a hot sulfur spring
[Ref.: #7413]	Geographic location (country and/or sea, region)	Orissa, Bhubaneswar, Atri
[Ref.: #7413]	Country	India
[Ref.: #7413]	Country ISO 3 Code	IND
[Ref.: #7413]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment of a hot sulfur spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Atri, Bhubaneswar
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Sulfuric	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ092334 (>99% sequence identity) for Thiomonas bhubaneswarensis from Microbeatlas

Aquatic Samples	66
Soil Samples	5
Animal Samples	5
Plant Samples
Total Samples	76

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7413]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7413]	Thiomonas bhubaneswarensis strain S10 16S ribosomal RNA gene, partial sequence	DQ092334	1440	ENA	339866 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thiomonas bhubaneswarensis DSM 18181	GCA_001517285	scaffold	GenBank	339866 tax ID
[Ref.: #67770]	Thiomonas bhubaneswarensis DSM 18181	GCA_001418255	scaffold	GenBank	339866 tax ID
[Ref.: #66792]	Thiomonas bhubaneswarensis strain DSM 18181	339866.4	wgs	PATRIC	339866 tax ID	*
[Ref.: #66792]	Thiomonas bhubaneswarensis DSM 18181	2615840605	draft	JGI IMG/M	339866 tax ID	*

[Ref.: #7413]	GC-content	64.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29136]	GC-content	64.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thiomonas bhubaneswarensis DSM 18181 NCBI: GCA_001418255.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thiomonas bhubaneswarensis strain DSM 18181 PATRIC: 339866.4
[Ref.: #69480]	gram-positive	no	98.195	yes
[Ref.: #69480]	anaerobic	no	98.996	yes
[Ref.: #69480]	halophile	no	94.585	no
[Ref.: #69480]	spore-forming	no	95.832	yes
[Ref.: #69480]	glucose-util	no	71.325	no
[Ref.: #69480]	motile	yes	91.135	yes
[Ref.: #69480]	thermophile	no	93.437	yes
[Ref.: #69480]	aerobic	yes	82.895	no
[Ref.: #69480]	flagellated	yes	59.65	no
[Ref.: #69480]	glucose-ferment	no	88.426	no

Availability in culture collections External links

[Ref.: #7413]

Culture collection no.

DSM 18181, JCM 14806

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Mechanism of electron transport during thiosulfate oxidation in an obligately mixotrophic bacterium Thiomonas bhubaneswarensis strain S10 (DSM 18181(T)).	Narayan KD, Sabat SC, Das SK	Appl Microbiol Biotechnol	10.1007/s00253-016-7958-x	2016	*
Phylogeny	Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium.	Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.007120-0	2009	*

References

#7413

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18181

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29136

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25561 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25561

IJSEM 2171 2009 ( DOI 10.1099/ijs.0.007120-0 , PubMed 19605731 )

* These data were automatically processed and therefore are not curated

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Thiomonas bhubaneswarensis DSM 18181

Thiomonas bhubaneswarensis strain DSM 18181

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