Name: Thiomonas perometabolis DSM 18570
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17951

Type strain:

Species: Thiomonas perometabolis

Culture col. no.: DSM 18570, ATCC 23370, CIP 104403, IAM 12132, IFO 14565, LMG 8564, THI 023, JCM 20426, NBRC 14565

Strain history: CIP <- 1995, IFO <- 1987, IAM <- ATCC <- J. London: strain THI 023

NCBI tax ID(s): 928 (species)

SI-ID 5030

LMG 8564, ATCC 23370, IAM 12132, IFO 14565, LMG 7199, LMG 8695, CIP 104403, NBRC 14565, DSM 18570, BCRC 17548, CCRC 17548, JCM 20426

Section

Thiomonas perometabolis DSM 18570 is a mesophilic, Gram-negative, motile bacterium that was isolated from soil.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Thiomonas*
	Species	**Thiomonas perometabolis**
	Full Scientific Name (LPSN)	Thiomonas perometabolis (London and Rittenberg 1967) Moreira and Amils 1997

Synonym

Thiobacillus perometabolis

Information on morphological and physiological properties Morphology

[Ref.: #121684]	Gram stain	negative

[Ref.: #121684]	Cell shape	rod-shaped

[Ref.: #121684]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7530]

Culture medium

THIOMONAS DELICATA MEDIUM (DSMZ Medium 1037)

[Ref.: #7530]

Culture medium growth

[Ref.: #7530]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7530]

Culture medium composition

expand / minimize

[Ref.: #35670]

Culture medium

MEDIUM 126 - for Thiomonas

[Ref.: #35670]

Culture medium growth

[Ref.: #35670]

Culture medium composition

expand / minimize

[Ref.: #121684]

Culture medium

CIP Medium 126

[Ref.: #121684]

Culture medium growth

[Ref.: #121684]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7530]		growth	30 °C
[Ref.: #35670]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121684]		growth	30-37 °C
[Ref.: #121684]	no	growth	10 °C
[Ref.: #121684]	no	growth	41 °C

[Ref.: #7530]	Temperature range	mesophilic
[Ref.: #35670]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121684]	Temperature range	mesophilic
[Ref.: #121684]	Temperature range	psychrophilic
[Ref.: #121684]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121684]		nitrate ChEBI	-	reduction
[Ref.: #121684]		nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121684]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #121684]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #121684]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #121684]	catalase	-	1.11.1.6
[Ref.: #121684]	gelatinase	-
[Ref.: #121684]	lysine decarboxylase	-	4.1.1.18
[Ref.: #121684]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121684]	oxidase	-
[Ref.: #121684]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7530]	Sample type/isolated from	soil
[Ref.: #7530]	Geographic location (country and/or sea, region)	California, Los Angeles area
[Ref.: #7530]	Country	USA
[Ref.: #7530]	Country ISO 3 Code	USA
[Ref.: #7530]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #121684]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY455808 (>99% sequence identity) for Thiomonas from Microbeatlas

Aquatic Samples	2269
Soil Samples	388
Animal Samples	312
Plant Samples	154
Total Samples	3123

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7530]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121684]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7530]	Thiomonas perometabolis 16S ribosomal RNA gene, partial sequence	AY455808	1380	ENA	928 tax ID
[Ref.: #20218]	Thiobacillus perometabolis 16S rRNA sequence	M79421	281	ENA	928 tax ID	*
[Ref.: #20218]	Thiobacillus perometabolis 16S rRNA sequence	M79422	355	ENA	928 tax ID	*
[Ref.: #20218]	Thiobacillus perometabolis 16S rRNA sequence	M79423	245	ENA	928 tax ID	*
[Ref.: #20218]	Thiomonas perometabolis partial 16S-23S ITS1, strain DSM 18570	FR693372	392	ENA	928 tax ID	*

Availability in culture collections External links

[Ref.: #7530]

Culture collection no.

DSM 18570, ATCC 23370, CIP 104403, IAM 12132, IFO 14565, LMG 8564, THI 023, JCM 20426, NBRC 14565

[Ref.: #86938]

SI-ID 5030

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thiomonas islandica sp. nov., a moderately thermophilic, hydrogen- and sulfur-oxidizing betaproteobacterium isolated from a hot spring.	Vesteinsdottir H, Reynisdottir DB, Orlygsson J	Int J Syst Evol Microbiol	10.1099/ijs.0.015511-0	2010	*
Phylogeny	Thiomonas bhubaneswarensis sp. nov., an obligately mixotrophic, moderately thermophilic, thiosulfate-oxidizing bacterium.	Panda SK, Jyoti V, Bhadra B, Nayak KC, Shivaji S, Rainey FA, Das SK	Int J Syst Evol Microbiol	10.1099/ijs.0.007120-0	2009	*

References

#7530

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18570

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35670 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86938

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5030.1 )

#121684 Collection of Institut Pasteur ; Curators of the CIP; CIP 104403
* These data were automatically processed and therefore are not curated

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