Elioraea tepidiphila DQ417339, TU-7 | Type strain | DSM 17972, CIP 109115 | BacDiveID:17879

Strain identifier

BacDive ID: 17879

Type strain:

Species: Elioraea tepidiphila

Strain Designation: DQ417339, TU-7

Culture col. no.: DSM 17972, CIP 109115

Strain history: <- M. da Costa, Univ. Coimbra, Portugal; TU-7 <- L. Albuquerque

NCBI tax ID(s): 1121861 (strain), 457934 (species)

SI-ID 400555

DSM 17972

Special Collections

Section

Elioraea tepidiphila DQ417339 is an aerobe, Gram-negative, motile bacterium that was isolated from hot spring.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Elioraea*
	Species	**Elioraea tepidiphila**
	Full Scientific Name (LPSN)	Elioraea tepidiphila Albuquerque et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32309]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.833

[Ref.: #32309]	Cell length	1.25 µm

[Ref.: #32309]	Cell width	0.75 µm

[Ref.: #32309]	Cell shape	rod-shaped

[Ref.: #32309]	Motility	yes

Pigment production

no

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

R3 MEDIUM (DSMZ Medium 966)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7304]			growth	50 °C
[Ref.: #32309]			growth	45-50 °C
[Ref.: #32309]			optimum	47.5 °C

	pH	Kind of pH		pH
[Ref.: #32309]			optimum	8.25
[Ref.: #32309]			growth	8-8.5

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #32309]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %97

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32309]		NaCl		growth	<1.5	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32309]		citrate ChEBI	+	carbon source
[Ref.: #32309]		gluconate ChEBI	+	carbon source
[Ref.: #32309]		glutamate ChEBI	+	carbon source
[Ref.: #32309]		lactate ChEBI	+	carbon source
[Ref.: #32309]		malate ChEBI	+	carbon source
[Ref.: #32309]		nitrate ChEBI	+	reduction
[Ref.: #32309]		proline ChEBI	+	carbon source
[Ref.: #32309]		pyruvate ChEBI	+	carbon source
[Ref.: #32309]		succinate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32309]		acid phosphatase	+	3.1.3.2
[Ref.: #32309]		alkaline phosphatase	+	3.1.3.1
[Ref.: #32309]		catalase	+	1.11.1.6
[Ref.: #32309]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7304]	Sample type/isolated from	hot spring
[Ref.: #7304]	Geographic location (country and/or sea, region)	Azores, island of São Miguel, Furnas
[Ref.: #7304]	Country	Portugal
[Ref.: #7304]	Country ISO 3 Code	PRT
[Ref.: #7304]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Global distribution of 16S sequence EF519867 (>99% sequence identity) for Elioraea tepidiphila subclade from Microbeatlas

Aquatic Samples	2890
Soil Samples	1722
Animal Samples	531
Plant Samples	149
Total Samples	5292

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7304]	Elioraea tepidiphila strain TU-7 16S ribosomal RNA gene, partial sequence	EF519867	1413	GenBank ENA	1121861 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elioraea tepidiphila DSM 17972	GCA_000378465	scaffold	GenBank ENA	1121861 tax ID	*
[Ref.: #66792]	Elioraea tepidiphila DSM 17972	1121861.3	wgs	PATRIC	1121861 tax ID	*
[Ref.: #66792]	Elioraea tepidiphila DSM 17972	2519899683	draft	JGI IMG/M	1121861 tax ID	*

GC-content

70.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Elioraea tepidiphila DSM 17972 DSM 17972 NCBI: GCA_000378465.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Elioraea tepidiphila DSM 17972 DSM 17972 NCBI: GCA_000378465.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.833	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.322	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.832	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.656	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.581	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	64.396	no

Availability in culture collections External links

Culture collection no.

DSM 17972, CIP 109115

SI-ID 400555

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Elioraea rosea sp. nov., a plant promoting bacterium isolated from floodwater of a paddy field.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004028	2020	*
Phylogeny	Elioraea thermophila sp. nov., a thermophilic bacterium from hot spring of the class Alphaproteobacteria, emended description of the genus Elioraea and proposal of Elioraeaceae fam. nov.	Habib N, Khan IU, Xiao M, Hejazi MS, Tarhriz V, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003915	2020	*
Phylogeny	Elioraea tepidiphila gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria.	Albuquerque L, Rainey FA, Nobre MF, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijs.0.65294-0	2008	*

References

#7304

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17972

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32309

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28547 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86868

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400555.1 )

#28547

IJSEM 773 2008 ( DOI 10.1099/ijs.0.65294-0 , PubMed 18398168 )

* These data were automatically processed and therefore are not curated

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