Strain identifier

BacDive ID: 17879

Type strain: Yes

Species: Elioraea tepidiphila

Strain Designation: DQ417339, TU-7

Strain history: <- M. da Costa, Univ. Coimbra, Portugal; TU-7 <- L. Albuquerque

NCBI tax ID(s): 1121861 (strain), 457934 (species)

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General

@ref: 7304

BacDive-ID: 17879

DSM-Number: 17972

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped

description: Elioraea tepidiphila DQ417339 is an aerobe, Gram-negative, motile bacterium that was isolated from hot spring.

NCBI tax id

NCBI tax idMatching level
457934species
1121861strain

strain history

  • @ref: 7304
  • history: <- M. da Costa, Univ. Coimbra, Portugal; TU-7 <- L. Albuquerque

doi: 10.13145/bacdive17879.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Elioraea
  • species: Elioraea tepidiphila
  • full scientific name: Elioraea tepidiphila Albuquerque et al. 2008

@ref: 7304

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Elioraea

species: Elioraea tepidiphila

full scientific name: Elioraea tepidiphila Albuquerque et al. 2008

strain designation: DQ417339, TU-7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32309negative1.25 µm0.75 µmrod-shapedyes
69480negative97.833

pigmentation

  • @ref: 32309
  • production: no

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_17972_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17972_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17972_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17972_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_17972_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 7304
  • name: R3 MEDIUM (DSMZ Medium 966)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/966
  • composition: Name: R3 MEDIUM (DSMZ Medium 966; with strain-specific modifications) Composition: NaOH 39.997 g/l Casamino acids 1.0 g/l Proteose peptone 1.0 g/l Yeast extract 1.0 g/l K2HPO4 0.6 g/l MgSO4 x 7 H2O 0.1 g/l Na pyruvate 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
7304positivegrowth50
32309positivegrowth45-50
32309positiveoptimum47.5

culture pH

@refabilitytypepHPH range
32309positivegrowth8-8.5alkaliphile
32309positiveoptimum8.25

Physiology and metabolism

oxygen tolerance

  • @ref: 32309
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
32309no
69481no97

halophily

  • @ref: 32309
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3230916947citrate+carbon source
3230924265gluconate+carbon source
3230929987glutamate+carbon source
3230924996lactate+carbon source
3230925115malate+carbon source
3230926271proline+carbon source
3230915361pyruvate+carbon source
3230930031succinate+carbon source
3230917632nitrate+reduction

enzymes

@refvalueactivityec
32309acid phosphatase+3.1.3.2
32309alkaline phosphatase+3.1.3.1
32309catalase+1.11.1.6
32309cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7304
  • sample type: hot spring
  • geographic location: Azores, island of São Miguel, Furnas
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3557.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1851;97_2221;98_2727;99_3557&stattab=map
  • Last taxonomy: Elioraea tepidiphila subclade
  • 16S sequence: EF519867
  • Sequence Identity:
  • Total samples: 5292
  • soil counts: 1722
  • aquatic counts: 2890
  • animal counts: 531
  • plant counts: 149

Safety information

risk assessment

  • @ref: 7304
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7304
  • description: Elioraea tepidiphila strain TU-7 16S ribosomal RNA gene, partial sequence
  • accession: EF519867
  • length: 1413
  • database: nuccore
  • NCBI tax ID: 1121861

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Elioraea tepidiphila DSM 17972GCA_000378465scaffoldncbi1121861
66792Elioraea tepidiphila DSM 179721121861.3wgspatric1121861
66792Elioraea tepidiphila DSM 179722519899683draftimg1121861

GC content

  • @ref: 32309
  • GC-content: 70.9

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno97no
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.833yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no88.322yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes80.832yes
69480spore-formingspore-formingAbility to form endo- or exosporesno87.656no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.581no
69480flagellatedmotile2+Ability to perform flagellated movementyes64.396no

External links

@ref: 7304

culture collection no.: DSM 17972, CIP 109115

straininfo link

  • @ref: 86868
  • straininfo: 400555

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18398168Elioraea tepidiphila gen. nov., sp. nov., a slightly thermophilic member of the Alphaproteobacteria.Albuquerque L, Rainey FA, Nobre MF, da Costa MSInt J Syst Evol Microbiol10.1099/ijs.0.65294-02008Acetobacteraceae/classification/genetics, Alphaproteobacteria/*classification/*genetics/growth & development/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Genes, Bacterial, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S, Species Specificity, Temperature, Terminology as Topic, Ubiquinone/analysisMetabolism
Phylogeny31804917Elioraea thermophila sp. nov., a thermophilic bacterium from hot spring of the class Alphaproteobacteria, emended description of the genus Elioraea and proposal of Elioraeaceae fam. nov.Habib N, Khan IU, Xiao M, Hejazi MS, Tarhriz V, Zhi XY, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0039152020Alphaproteobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Hot Springs/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny32027305Elioraea rosea sp. nov., a plant promoting bacterium isolated from floodwater of a paddy field.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0040282020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodospirillales/*classification/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry, *Water MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7304Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17972)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17972
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32309Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2854728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86868Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400555.1StrainInfo: A central database for resolving microbial strain identifiers