Name: Rhizomicrobium electricum DSM 21034
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17878

Type strain:

Species: Rhizomicrobium electricum

Culture col. no.: DSM 21034, JCM 15089, KCTC 5806, MFC MfC52, MFC 52

Strain history: Y. Kodama Mfc52.

NCBI tax ID(s): 480070 (species)

SI-ID 403142

DSM 21034

Special Collections

Section

Rhizomicrobium electricum DSM 21034 is an obligate anaerobe, Gram-negative bacterium that was isolated from biofilm attached to anode graphite of a cellulose-fed microbial fuel cell.

Gram-negative
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Micropepsales*
	Family	*Micropepsaceae*
	Genus	*Rhizomicrobium*
	Species	**Rhizomicrobium electricum**
	Full Scientific Name (LPSN)	Rhizomicrobium electricum Kodama and Watanabe 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.042

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15519]

Culture medium

1/10 PYGV MEDIUM MODIFIED (DSMZ Medium 1398)

[Ref.: #15519]

Culture medium growth

[Ref.: #15519]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15519]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15519]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15519]

Oxygen tolerance

obligate anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15519]	Sample type/isolated from	biofilm attached to anode graphite of a cellulose-fed microbial fuel cell
[Ref.: #15519]	Geographic location (country and/or sea, region)	Iwate, Kamaishi City
[Ref.: #15519]	Country	Japan
[Ref.: #15519]	Country ISO 3 Code	JPN
[Ref.: #15519]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Biofilm attached to anode graphite of a cellulose-fed microbial fuel cell
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Biofilm	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15519]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15519]	Rhizomicrobium electricum gene for 16S rRNA, partial sequence	AB365487	1423	GenBank ENA	480070 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizomicrobium electricum DSM 21034	GCA_011762045	scaffold	GenBank ENA	480070 tax ID
[Ref.: #66792]	Rhizomicrobium electricum strain DSM 21034	480070.3	wgs	PATRIC	480070 tax ID	*
[Ref.: #66792]	Rhizomicrobium electricum DSM 21034	2828326373	draft	JGI IMG/M	480070 tax ID	*

[Ref.: #15519]

GC-content

64.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizomicrobium electricum DSM 21034 NCBI: GCA_011762045.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizomicrobium electricum strain DSM 21034 PATRIC: 480070.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.042	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	60.673	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.958	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	54.843	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.654	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	65.723	no

Availability in culture collections External links

[Ref.: #15519]

Culture collection no.

DSM 21034, JCM 15089, KCTC 5806, MFC MfC52, MFC 52

[Ref.: #86867]

SI-ID 403142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizomicrobium electricum sp. nov., a facultatively anaerobic, fermentative, prosthecate bacterium isolated from a cellulose-fed microbial fuel cell.	Kodama Y, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.023580-0	2010	*

References

#15519

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21034

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86867

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403142.1 )

* These data were automatically processed and therefore are not curated

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Rhizomicrobium electricum DSM 21034

Rhizomicrobium electricum strain DSM 21034

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