Name: Pseudoleptotrichia goodfellowii LB 57
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17864

Type strain:

Species: Pseudoleptotrichia goodfellowii

Strain Designation: LB 57

Culture col. no.: DSM 19756, CCUG 32286, CIP 107915, JCM 16774

Strain history: CCUG 32286 <-- R. Hammann LB 57.

NCBI tax ID(s): 714315 (strain), 157692 (species)

Section

Pseudoleptotrichia goodfellowii LB 57 is an anaerobe, mesophilic, Gram-negative human pathogen that was isolated from prosthetic aortic valve.

Gram-negative
rod-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Pseudoleptotrichia*
	Species	**Pseudoleptotrichia goodfellowii**
	Full Scientific Name (LPSN)	Pseudoleptotrichia goodfellowii (Eribe et al. 2004) Eisenberg et al. 2020

Synonym

Leptotrichia goodfellowii

Information on morphological and physiological properties Morphology

[Ref.: #30006]	Gram stain	negative
[Ref.: #30006]	Cell length	3 µm
[Ref.: #30006]	Cell width	0.45 µm
[Ref.: #30006]	Cell shape	rod-shaped
[Ref.: #30006]	Motility	no

[Ref.: #69480]	Gram stain	negative Confidence in %99.807

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8296]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8296]

Culture medium growth

[Ref.: #8296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8296]

Culture medium composition

expand / minimize

[Ref.: #8296]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8296]

Culture medium growth

[Ref.: #8296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8296]

Culture medium composition

expand / minimize

[Ref.: #34948]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #34948]

Culture medium growth

[Ref.: #34948]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8296]	growth	37 °C
[Ref.: #30006]	optimum	37 °C
[Ref.: #34948]	growth	37 °C
[Ref.: #50947]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8296]	Temperature range	mesophilic
[Ref.: #30006]	Temperature range	mesophilic
[Ref.: #34948]	Temperature range	mesophilic
[Ref.: #50947]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8296]	Oxygen tolerance	anaerobe
[Ref.: #30006]	Oxygen tolerance	anaerobe
[Ref.: #50947]	Oxygen tolerance	anaerobe
[Ref.: #50947]	Oxygen tolerance	microaerophile
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.416

[Ref.: #30006]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.968

[Ref.: #30006]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30006]	arginine ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #30006]	esculin ChEBI	+	hydrolysis
[Ref.: #30006]	histidine ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #30006]	leucine ChEBI	+	carbon source
[Ref.: #30006]	mannose ChEBI	+	carbon source
[Ref.: #30006]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68380]		indole ChEBI	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #30006]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #30006]	catalase	+	1.11.1.6
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8296]	11006	-	+	-	+	-	-	+	-	-	+	+/-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8296]	Sample type/isolated from	prosthetic aortic valve
[Ref.: #8296]	Country	Germany
[Ref.: #8296]	Country ISO 3 Code	DEU
[Ref.: #8296]	Continent	Europe

[Ref.: #50947]	Sample type/isolated from	Human blood,endocarditis,prosthetic aortic valve
[Ref.: #50947]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #50947]	Country	Germany
[Ref.: #50947]	Country ISO 3 Code	DEU
[Ref.: #50947]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human blood
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection

#Medical device

#Heart valve

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB558169 (>99% sequence identity) for Pseudoleptotrichia goodfellowii subclade from Microbeatlas

Aquatic Samples	971
Soil Samples	124
Animal Samples	11021
Plant Samples	43
Total Samples	12159

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8296]	Pathogenicity (human)	yes, in single cases
[Ref.: #8296]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8296]	Leptotrichia goodfellowii strain LB57 16S ribosomal RNA gene, partial sequence	AY029807	1485	ENA	714315 tax ID
[Ref.: #67770]	Leptotrichia goodfellowii gene for 16S ribosomal RNA, partial sequence, strain: JCM 16774	AB558169	1473	ENA	157692 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leptotrichia goodfellowii JCM16774 DNA, complete genome	AP019822		ENA	157692 tax ID
[Ref.: #67770]	Pseudoleptotrichia goodfellowii DSM 19756 DSM 19756	GCA_000516535	scaffold	GenBank	714315 tax ID
[Ref.: #66792]	Pseudoleptotrichia goodfellowii JCM16774	GCA_007990505	complete	GenBank	157692 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii DSM 19756	714315.3	wgs	PATRIC	714315 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii strain JCM16774	157692.5	complete	PATRIC	157692 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii LB 57, DSM 19756	2506520045	draft	JGI IMG/M	714315 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoleptotrichia goodfellowii JCM16774 NCBI: GCA_007990505.1
[Ref.: #69480]	gram-positive	no	99.807	yes
[Ref.: #69480]	anaerobic	yes	98.416	no
[Ref.: #69480]	spore-forming	no	99.968	yes
[Ref.: #69480]	thermophile	no	99.532	no
[Ref.: #69480]	motile	no	87.069	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoleptotrichia goodfellowii JCM16774 NCBI: GCA_007990505.1
[Ref.: #69481]	spore-forming	no	72	no

Availability in culture collections External links

[Ref.: #8296]

Culture collection no.

DSM 19756, CCUG 32286, CIP 107915, JCM 16774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to reclassify Leptotrichia goodfellowii into a novel genus as Pseudoleptotrichia goodfellowii gen. nov., comb. nov.	Eisenberg T, Glaeser SP, Blom J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004024	2020	*
Phylogeny	Genetic diversity of Leptotrichia and description of Leptotrichia goodfellowii sp. nov., Leptotrichia hofstadii sp. nov., Leptotrichia shahii sp. nov. and Leptotrichia wadei sp. nov.	Eribe ERK, Paster BJ, Caugant DA, Dewhirst FE, Stromberg VK, Lacy GH, Olsen I	Int J Syst Evol Microbiol	10.1099/ijs.0.02819-0	2004	*

References

#8296

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19756

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30006

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26370 (see below)

#34948 ; Curators of the CIP;
#50947 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32286

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26370

IJSEM 583 2004 ( DOI 10.1099/ijs.0.02819-0 , PubMed 15023979 )

* These data were automatically processed and therefore are not curated

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Pseudoleptotrichia goodfellowii JCM16774

Pseudoleptotrichia goodfellowii JCM16774

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