Name: Pseudoleptotrichia goodfellowii LB 57
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17864

Type strain:

Species: Pseudoleptotrichia goodfellowii

Strain Designation: LB 57

Culture col. no.: DSM 19756, CCUG 32286, CIP 107915, JCM 16774

Strain history: CIP <- 2003, CCUG <- D. Heidelberg, Becton Dickinson: strain LB 57

NCBI tax ID(s): 714315 (strain), 157692 (species)

SI-ID 55133

CCUG 32286, CIP 107915, DSM 19756, JCM 16774

Special Collections

Section

Pseudoleptotrichia goodfellowii LB 57 is an anaerobe, Gram-negative, rod-shaped human pathogen that was isolated from prosthetic aortic valve.

Gram-negative
rod-shaped
anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Pseudoleptotrichia*
	Species	**Pseudoleptotrichia goodfellowii**
	Full Scientific Name (LPSN)	Pseudoleptotrichia goodfellowii (Eribe et al. 2004) Eisenberg et al. 2020

Synonym

Leptotrichia goodfellowii

Information on morphological and physiological properties Morphology

[Ref.: #30006]	Gram stain	negative
[Ref.: #119707]	Gram stain	negative

[Ref.: #30006]	Cell length	3 µm

[Ref.: #30006]	Cell width	0.45 µm

[Ref.: #30006]	Cell shape	rod-shaped
[Ref.: #119707]	Cell shape	rod-shaped

[Ref.: #30006]	Motility	no
[Ref.: #119707]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #119707]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8296]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8296]

Culture medium growth

[Ref.: #8296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8296]

Culture medium composition

expand / minimize

[Ref.: #8296]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #8296]

Culture medium growth

[Ref.: #8296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8296]

Culture medium composition

expand / minimize

[Ref.: #34948]

Culture medium

MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria

[Ref.: #34948]

Culture medium growth

[Ref.: #34948]

Culture medium composition

expand / minimize

[Ref.: #119707]

Culture medium

CIP Medium 10

[Ref.: #119707]

Culture medium growth

[Ref.: #119707]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8296]	growth	37 °C
[Ref.: #30006]	optimum	37 °C
[Ref.: #34948]	growth	37 °C
[Ref.: #50947]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8296]	Oxygen tolerance	anaerobe
[Ref.: #30006]	Oxygen tolerance	anaerobe
[Ref.: #50947]	Oxygen tolerance	anaerobe
[Ref.: #50947]	Oxygen tolerance	microaerophile
[Ref.: #119707]	Oxygen tolerance	facultative anaerobe

[Ref.: #30006]

Ability of spore formation

[Ref.: #30006]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30006]	arginine ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #119707]	cellobiose ChEBI	-	degradation
[Ref.: #119707]	D-arabinose ChEBI	-	degradation
[Ref.: #119707]	D-fructose ChEBI	+	degradation
[Ref.: #119707]	D-glucose ChEBI	+	degradation
[Ref.: #119707]	D-xylose ChEBI	-	degradation
[Ref.: #30006]	esculin ChEBI	+	hydrolysis
[Ref.: #119707]	esculin ChEBI	+	hydrolysis
[Ref.: #30006]	histidine ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #119707]	lactose ChEBI	-	degradation
[Ref.: #30006]	leucine ChEBI	+	carbon source
[Ref.: #119707]	maltose ChEBI	-	degradation
[Ref.: #30006]	mannose ChEBI	+	carbon source
[Ref.: #30006]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #119707]	nitrate ChEBI	+	reduction
[Ref.: #119707]	nitrate ChEBI	+	respiration
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #119707]	nitrite ChEBI	+	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #119707]	salicin ChEBI	-	degradation
[Ref.: #119707]	sucrose ChEBI	-	degradation
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119707]		indole ChEBI	yes
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #30006]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #119707]	amylase	-
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #119707]	beta-galactosidase	+	3.2.1.23
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #119707]	caseinase	+	3.4.21.50
[Ref.: #30006]	catalase	+	1.11.1.6
[Ref.: #119707]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119707]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119707]	gelatinase	+/-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #119707]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #119707]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119707]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #119707]	protease	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #119707]	tween esterase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #119707]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8296]	12299	-	+	-	+	-	-	+	-	-	+	+/-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119707]	10743	-	+	+	+	-	+	-	-	-	-	+	+	-	+	+	+	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8296]	Sample type/isolated from	prosthetic aortic valve
[Ref.: #8296]	Country	Germany
[Ref.: #8296]	Country ISO 3 Code	DEU
[Ref.: #8296]	Continent	Europe

[Ref.: #50947]	Sample type/isolated from	Human blood,endocarditis,prosthetic aortic valve
[Ref.: #50947]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #50947]	Country	Germany
[Ref.: #50947]	Country ISO 3 Code	DEU
[Ref.: #50947]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human blood
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe

[Ref.: #119707]	Sample type/isolated from	Human, Blood
[Ref.: #119707]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #119707]	Country	Germany
[Ref.: #119707]	Country ISO 3 Code	DEU
[Ref.: #119707]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection

#Medical device

#Heart valve

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB558169 (>99% sequence identity) for Pseudoleptotrichia goodfellowii subclade from Microbeatlas

Aquatic Samples	971
Soil Samples	124
Animal Samples	11021
Plant Samples	43
Total Samples	12159

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8296]	Pathogenicity (human)	yes, in single cases
[Ref.: #8296]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119707]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8296]	Leptotrichia goodfellowii strain LB57 16S ribosomal RNA gene, partial sequence	AY029807	1485	GenBank ENA	714315 tax ID
[Ref.: #67770]	Leptotrichia goodfellowii gene for 16S ribosomal RNA, partial sequence, strain: JCM 16774	AB558169	1473	GenBank ENA	157692 tax ID
[Ref.: #124043]	Pseudoleptotrichia goodfellowii JCM 16774 gene for 16S rRNA, partial sequence.	LC752379	571	GenBank ENA	157692 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoleptotrichia goodfellowii DSM 19756	GCA_000516535	scaffold	GenBank ENA	714315 tax ID
[Ref.: #66792]	Pseudoleptotrichia goodfellowii JCM16774	GCA_007990505	complete	GenBank ENA	157692 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii DSM 19756	714315.3	wgs	PATRIC	714315 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii strain JCM16774	157692.5	complete	PATRIC	157692 tax ID	*
[Ref.: #66792]	Leptotrichia goodfellowii LB 57, DSM 19756	2506520045	draft	JGI IMG/M	714315 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoleptotrichia goodfellowii JCM16774 NCBI: GCA_007990505.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoleptotrichia goodfellowii JCM16774 NCBI: GCA_007990505.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	84.971	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	57.068	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.786	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.438	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.257	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #8296]

Culture collection no.

DSM 19756, CCUG 32286, CIP 107915, JCM 16774

[Ref.: #86854]

SI-ID 55133

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to reclassify Leptotrichia goodfellowii into a novel genus as Pseudoleptotrichia goodfellowii gen. nov., comb. nov.	Eisenberg T, Glaeser SP, Blom J, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.004024	2020	*
Phylogeny	Genetic diversity of Leptotrichia and description of Leptotrichia goodfellowii sp. nov., Leptotrichia hofstadii sp. nov., Leptotrichia shahii sp. nov. and Leptotrichia wadei sp. nov.	Eribe ERK, Paster BJ, Caugant DA, Dewhirst FE, Stromberg VK, Lacy GH, Olsen I	Int J Syst Evol Microbiol	10.1099/ijs.0.02819-0	2004	*

References

#8296

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19756

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30006

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26370 (see below)

#34948 ; Curators of the CIP;
#50947 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32286

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86854

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID55133.1 )

#119707 Collection of Institut Pasteur ; Curators of the CIP; CIP 107915

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#26370

IJSEM 583 2004 ( DOI 10.1099/ijs.0.02819-0 , PubMed 15023979 )

* These data were automatically processed and therefore are not curated

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Pseudoleptotrichia goodfellowii JCM16774

Pseudoleptotrichia goodfellowii JCM16774

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