Acetomicrobium hydrogeniformans (DSM 22491, ATCC BAA-1850, OS1)

Name: Acetomicrobium hydrogeniformans (DSM 22491, ATCC BAA-1850, OS1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17779

Type strain

Strain Designation OS1

Culture col. no. DSM 22491 ATCC BAA-1850 OS1

NCBI tax ID(s) 592015 649746

Special Collections DSMZ Literature strains

History <- R. S. Tanner, Dept. Botany and Microbiol., Univ. Oklahoma, USA; OS1 <- R. S. Tanner {2007}

Links

Acetomicrobium hydrogeniformans OS1 is an anaerobe, chemoorganotroph, Gram-negative bacterium that was isolated from oil water separation unit effluent.

Gram-negative rod-shaped anaerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406226

ATCC BAA-1850,DSM 22491

@ref 20215

Last LPSN update 2026-02-09 11:22:18

Domain Bacteria

Phylum Synergistota

Class Synergistia

Order Synergistales

Family Synergistaceae

Genus Acetomicrobium

Species Acetomicrobium hydrogeniformans

Full scientific name Acetomicrobium hydrogeniformans (Maune and Tanner 2012) Ben Hania et al. 2016

Synonyms (1)

Anaerobaculum hydrogeniformans

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29890	negative	1.7-2.7 µm	0.4-0.5 µm	rod-shaped
43698	negative			rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16360	ANAEROBACULUM MEDIUM (DSMZ Medium 104a)		Medium recipe at MediaDive	Name: ANAEROBACULUM MEDIUM (DSMZ Medium 104a) Composition: Yeast extract 10.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2S2O3 x 5 H2O 2.5 g/l D-Glucose 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16360	positive	growth	55
29890	positive	growth	40-65
29890	positive	optimum	55
43698	positive	growth	40-65
43698	positive	optimum	55

Culture pH

@ref	Ability	Type	PH	PH range
29890	positive	optimum	7
43698	positive	optimum	7
29890	positive	growth	06-09	alkaliphile
43698	positive	growth	6-9

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
16360	anaerobe
29890	anaerobe
43698	obligate anaerobe

Nutrition type

43698

Typechemoorganotroph

Spore formation

@ref	Spore formation
29890
43698

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29890	NaCl	positive	growth	0.8-7 %
29890	NaCl	positive	optimum	10 %
43698	NaCl	positive	growth	0.8-70 g/L
43698	NaCl	positive	optimum	10 g/L

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29890	22653 ChEBI	asparagine	+	carbon source
43698	15824 ChEBI	D-fructose	+	assimilation
43698	17634 ChEBI	D-glucose	+	assimilation
29890	28757 ChEBI	fructose	+	carbon source
29890	17234 ChEBI	glucose	+	carbon source
29890	29987 ChEBI	glutamate	+	carbon source
43698	17754 ChEBI	glycerol	-	assimilation
29890	27570 ChEBI	histidine	+	carbon source
43698	30924 ChEBI	L-tartrate	+	assimilation
29890	25017 ChEBI	leucine	+	carbon source
29890	15792 ChEBI	malonate	+	carbon source
29890	17306 ChEBI	maltose	+	carbon source
43698	17306 ChEBI	maltose	+	assimilation
29890	37684 ChEBI	mannose	+	carbon source
43698	37684 ChEBI	mannose	+	assimilation
29890	28044 ChEBI	phenylalanine	+	carbon source
29890	15361 ChEBI	pyruvate	+	carbon source
43698	15361 ChEBI	pyruvate	+	assimilation
29890	17822 ChEBI	serine	+	carbon source
29890	26986 ChEBI	threonine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
43698	catalase	-	1.11.1.6
43698	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Industrial wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16360	oil water separation unit effluent	Alaska, North Slope Borough	USA	USA	North America
43698	Oil production water	Alaska	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FJ862996 (>99% sequence identity) for Acetomicrobium from Microbeatlas

Aquatic Samples	199
Soil Samples	9
Animal Samples	38
Plant Samples	19
Total Samples	265

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16360	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM16045v2 assembly for Acetomicrobium hydrogeniformans ATCC BAA-1850 OS1	contig	GCA_000160455	592015.20	647000209	592015	76.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16360	Anaerobaculum hydrogeniformans ATCC BAA-1850 16S ribosomal RNA gene, partial sequence	FJ862996	1444		592015

GC content

@ref	GC-content (mol%)	Method
16360	46.6	high performance liquid chromatography (HPLC)
29890	46.6

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Tungsten enzymes play a role in detoxifying food and antimicrobial aldehydes in the human gut microbiome.	Schut GJ, Thorgersen MP, Poole FL, Haja DK, Putumbaka S, Adams MWW.	Proc Natl Acad Sci U S A	10.1073/pnas.2109008118	2021
Phylogeny	Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium.	Hania WB, Bouanane-Darenfed A, Cayol JL, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijsem.0.000910	2016
Genetics	Genome Sequence of Acetomicrobium hydrogeniformans OS1.	Cook LE, Gang SS, Ihlan A, Maune M, Tanner RS, McInerney MJ, Weinstock G, Lobos EA, Gunsalus RP	Genome Announc	10.1128/genomeA.00581-18	2018
Phylogeny	Thermosynergistes pyruvativorans gen. nov., sp. nov., an anaerobic, pyruvate-degrading bacterium from Shengli oilfield, and proposal of Thermosynergistaceae fam. nov. in the phylum Synergistetes.	Yang M, Li J, Lv XM, Dai LR, Wu KJ, Tu B, Lawson PA, Tang YQ, Cheng L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005031	2021
Phylogeny	Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum.	Maune MW, Tanner RS	Int J Syst Evol Microbiol	10.1099/ijs.0.024349-0	2011

References

#16360	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22491
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26263	IJSEM 832 2012 ( DOI 10.1099/ijs.0.024349-0 , PubMed 21602364 )
#29890	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26263
#43698	Wajdi Ben Hania, Amel Bouanane-Darenfed, Jean-Luc Cayol, Bernard Ollivier, Marie-Laure Fardeau: Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium. IJSEM 66: 1506 - 1509 2016 ( DOI 10.1099/ijsem.0.000910 , PubMed 26791251 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetomicrobium hydrogeniformans (DSM 22491, ATCC BAA-1850, OS1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000160455

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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