Name: Acetomicrobium hydrogeniformans OS1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17779

Type strain:

Species: Acetomicrobium hydrogeniformans

Strain Designation: OS1

Culture col. no.: DSM 22491, ATCC BAA-1850

Strain history: <- R. S. Tanner, Dept. Botany and Microbiol., Univ. Oklahoma, USA; OS1 <- R. S. Tanner {2007}

NCBI tax ID(s): 649746 (species)

SI-ID 406226

DSM 22491

Section

Acetomicrobium hydrogeniformans OS1 is an anaerobe, chemoorganotroph, thermophilic bacterium that was isolated from oil water separation unit effluent.

Gram-negative
rod-shaped
anaerobe
chemoorganotroph
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Synergistota*
	Class	*Synergistia*
	Order	*Synergistales*
	Family	*Synergistaceae*
	Genus	*Acetomicrobium*
	Species	**Acetomicrobium hydrogeniformans**
	Full Scientific Name (LPSN)	Acetomicrobium hydrogeniformans (Maune and Tanner 2012) Ben Hania et al. 2016

Synonym

Anaerobaculum hydrogeniformans

Information on morphological and physiological properties Morphology

[Ref.: #29890]	Gram stain	negative
[Ref.: #43698]	Gram stain	negative

[Ref.: #29890]	Cell length	1.7-2.7 µm

[Ref.: #29890]	Cell width	0.4-0.5 µm

[Ref.: #29890]	Cell shape	rod-shaped
[Ref.: #43698]	Cell shape	rod-shaped

[Ref.: #29890]	Motility	no
[Ref.: #43698]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16360]

Culture medium

ANAEROBACULUM MEDIUM (DSMZ Medium 104a)

[Ref.: #16360]

Culture medium growth

[Ref.: #16360]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16360]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16360]	growth	55 °C
[Ref.: #29890]	growth	40-65 °C
[Ref.: #29890]	optimum	55 °C
[Ref.: #43698]	growth	40-65 °C
[Ref.: #43698]	optimum	55 °C

[Ref.: #16360]	Temperature range	thermophilic
[Ref.: #29890]	Temperature range	thermophilic
[Ref.: #43698]	Temperature range	thermophilic

		pH
[Ref.: #29890]	optimum	7
[Ref.: #43698]	optimum	7
[Ref.: #29890]	growth	06-09
[Ref.: #43698]	growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16360]	Oxygen tolerance	anaerobe
[Ref.: #29890]	Oxygen tolerance	anaerobe
[Ref.: #43698]	Oxygen tolerance	obligate anaerobe

[Ref.: #43698]

Nutrition type

chemoorganotroph

[Ref.: #29890]	Ability of spore formation	no
[Ref.: #43698]	Ability of spore formation	no

	Salt		Salt conc.
[Ref.: #29890]	NaCl	growth	0.8-7	%
[Ref.: #29890]	NaCl	optimum	10	%
[Ref.: #43698]	NaCl	growth	0.8-70	g/L
[Ref.: #43698]	NaCl	optimum	10	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29890]	asparagine ChEBI	+	carbon source
[Ref.: #43698]	D-fructose ChEBI	+	assimilation
[Ref.: #43698]	D-glucose ChEBI	+	assimilation
[Ref.: #29890]	fructose ChEBI	+	carbon source
[Ref.: #29890]	glucose ChEBI	+	carbon source
[Ref.: #29890]	glutamate ChEBI	+	carbon source
[Ref.: #43698]	glycerol ChEBI	-	assimilation
[Ref.: #29890]	histidine ChEBI	+	carbon source
[Ref.: #43698]	L-tartrate ChEBI	+	assimilation
[Ref.: #29890]	leucine ChEBI	+	carbon source
[Ref.: #29890]	malonate ChEBI	+	carbon source
[Ref.: #29890]	maltose ChEBI	+	carbon source
[Ref.: #43698]	maltose ChEBI	+	assimilation
[Ref.: #29890]	mannose ChEBI	+	carbon source
[Ref.: #43698]	mannose ChEBI	+	assimilation
[Ref.: #29890]	phenylalanine ChEBI	+	carbon source
[Ref.: #29890]	pyruvate ChEBI	+	carbon source
[Ref.: #43698]	pyruvate ChEBI	+	assimilation
[Ref.: #29890]	serine ChEBI	+	carbon source
[Ref.: #29890]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43698]		catalase	-	1.11.1.6
[Ref.: #43698]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16360]	Sample type/isolated from	oil water separation unit effluent
[Ref.: #16360]	Geographic location (country and/or sea, region)	Alaska, North Slope Borough
[Ref.: #16360]	Country	USA
[Ref.: #16360]	Country ISO 3 Code	USA
[Ref.: #16360]	Continent	North America

[Ref.: #43698]	Sample type/isolated from	Oil production water
[Ref.: #43698]	Geographic location (country and/or sea, region)	Alaska
[Ref.: #43698]	Country	USA
[Ref.: #43698]	Country ISO 3 Code	USA
[Ref.: #43698]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Wastewater
#Engineered	#Waste	#Industrial wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ862996 (>99% sequence identity) for Acetomicrobium from Microbeatlas

Aquatic Samples	199
Soil Samples	9
Animal Samples	38
Plant Samples	19
Total Samples	265

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16360]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16360]	Anaerobaculum hydrogeniformans ATCC BAA-1850 16S ribosomal RNA gene, partial sequence	FJ862996	1444	ENA	592015 tax ID

[Ref.: #16360]	GC-content	46.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29890]	GC-content	46.6 mol%

Availability in culture collections External links

[Ref.: #16360]

Culture collection no.

DSM 22491, ATCC BAA-1850

[Ref.: #86770]

SI-ID 406226

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium.	Hania WB, Bouanane-Darenfed A, Cayol JL, Ollivier B, Fardeau ML	Int J Syst Evol Microbiol	10.1099/ijsem.0.000910	2016	*
Phylogeny	Thermosynergistes pyruvativorans gen. nov., sp. nov., an anaerobic, pyruvate-degrading bacterium from Shengli oilfield, and proposal of Thermosynergistaceae fam. nov. in the phylum Synergistetes.	Yang M, Li J, Lv XM, Dai LR, Wu KJ, Tu B, Lawson PA, Tang YQ, Cheng L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005031	2021	*
Genetics	Genome Sequence of Acetomicrobium hydrogeniformans OS1.	Cook LE, Gang SS, Ihlan A, Maune M, Tanner RS, McInerney MJ, Weinstock G, Lobos EA, Gunsalus RP	Genome Announc	10.1128/genomeA.00581-18	2018	*
Phylogeny	Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum.	Maune MW, Tanner RS	Int J Syst Evol Microbiol	10.1099/ijs.0.024349-0	2011	*

References

#16360

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22491

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29890

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26263 (see below)

#43698

Wajdi Ben Hania, Amel Bouanane-Darenfed, Jean-Luc Cayol, Bernard Ollivier, Marie-Laure Fardeau: Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium. IJSEM 66: 1506 - 1509 2016 ( DOI 10.1099/ijsem.0.000910 , PubMed 26791251 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86770

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406226.1 )

#26263

IJSEM 832 2012 ( DOI 10.1099/ijs.0.024349-0 , PubMed 21602364 )

* These data were automatically processed and therefore are not curated

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