Strain identifier
BacDive ID: 17779
Type strain:
Species: Acetomicrobium hydrogeniformans
Strain Designation: OS1
Strain history: <- R. S. Tanner, Dept. Botany and Microbiol., Univ. Oklahoma, USA; OS1 <- R. S. Tanner {2007}
NCBI tax ID(s): 592015 (strain), 649746 (species)
General
@ref: 16360
BacDive-ID: 17779
DSM-Number: 22491
keywords: 16S sequence, Bacteria, anaerobe, chemoorganotroph, thermophilic, Gram-negative, rod-shaped
description: Acetomicrobium hydrogeniformans OS1 is an anaerobe, chemoorganotroph, thermophilic bacterium that was isolated from oil water separation unit effluent.
NCBI tax id
NCBI tax id | Matching level |
---|---|
649746 | species |
592015 | strain |
strain history
- @ref: 16360
- history: <- R. S. Tanner, Dept. Botany and Microbiol., Univ. Oklahoma, USA; OS1 <- R. S. Tanner {2007}
doi: 10.13145/bacdive17779.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/synergistota
- domain: Bacteria
- phylum: Synergistota
- class: Synergistia
- order: Synergistales
- family: Synergistaceae
- genus: Acetomicrobium
- species: Acetomicrobium hydrogeniformans
- full scientific name: Acetomicrobium hydrogeniformans (Maune and Tanner 2012) Ben Hania et al. 2016
synonyms
- @ref: 20215
- synonym: Anaerobaculum hydrogeniformans
@ref: 16360
domain: Bacteria
phylum: Synergistetes
class: Synergistia
order: Synergistales
family: Synergistaceae
genus: Acetomicrobium
species: Acetomicrobium hydrogeniformans
full scientific name: Acetomicrobium hydrogeniformans (Maune and Tanner 2012) Ben Hania et al. 2016
strain designation: OS1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
29890 | negative | 1.7-2.7 µm | 0.4-0.5 µm | rod-shaped | no |
43698 | negative | rod-shaped | yes |
Culture and growth conditions
culture medium
- @ref: 16360
- name: ANAEROBACULUM MEDIUM (DSMZ Medium 104a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104a
- composition: Name: ANAEROBACULUM MEDIUM (DSMZ Medium 104a) Composition: Yeast extract 10.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2S2O3 x 5 H2O 2.5 g/l D-Glucose 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
@ref | growth | type | temperature |
---|---|---|---|
16360 | positive | growth | 55 |
29890 | positive | growth | 40-65 |
29890 | positive | optimum | 55 |
43698 | positive | growth | 40-65 |
43698 | positive | optimum | 55 |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29890 | positive | growth | 06-09 | alkaliphile |
29890 | positive | optimum | 7 | |
43698 | positive | growth | 6-9 | |
43698 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
16360 | anaerobe |
29890 | anaerobe |
43698 | obligate anaerobe |
nutrition type
- @ref: 43698
- type: chemoorganotroph
spore formation
@ref | spore formation |
---|---|
29890 | no |
43698 | no |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29890 | NaCl | positive | growth | 0.8-7 % |
29890 | NaCl | positive | optimum | 10 % |
43698 | NaCl | positive | growth | 0.8-70 g/L |
43698 | NaCl | positive | optimum | 10 g/L |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29890 | 22653 | asparagine | + | carbon source |
29890 | 28757 | fructose | + | carbon source |
29890 | 17234 | glucose | + | carbon source |
29890 | 29987 | glutamate | + | carbon source |
29890 | 27570 | histidine | + | carbon source |
29890 | 25017 | leucine | + | carbon source |
29890 | 15792 | malonate | + | carbon source |
29890 | 17306 | maltose | + | carbon source |
29890 | 37684 | mannose | + | carbon source |
29890 | 28044 | phenylalanine | + | carbon source |
29890 | 15361 | pyruvate | + | carbon source |
29890 | 17822 | serine | + | carbon source |
29890 | 26986 | threonine | + | carbon source |
43698 | 17754 | glycerol | - | assimilation |
43698 | 15824 | D-fructose | + | assimilation |
43698 | 17634 | D-glucose | + | assimilation |
43698 | 30924 | L-tartrate | + | assimilation |
43698 | 17306 | maltose | + | assimilation |
43698 | 37684 | mannose | + | assimilation |
43698 | 15361 | pyruvate | + | assimilation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43698 | catalase | - | 1.11.1.6 |
43698 | cytochrome oxidase | - | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16360 | oil water separation unit effluent | Alaska, North Slope Borough | USA | USA | North America |
43698 | Oil production water | Alaska | USA | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Engineered product |
#Engineered | #Waste | #Wastewater |
#Engineered | #Waste | #Industrial wastewater |
taxonmaps
- @ref: 69479
- File name: preview.99_6502.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15969;96_645;97_748;98_4796;99_6502&stattab=map
- Last taxonomy: Acetomicrobium
- 16S sequence: FJ862996
- Sequence Identity:
- Total samples: 265
- soil counts: 9
- aquatic counts: 199
- animal counts: 38
- plant counts: 19
Safety information
risk assessment
- @ref: 16360
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16360
- description: Anaerobaculum hydrogeniformans ATCC BAA-1850 16S ribosomal RNA gene, partial sequence
- accession: FJ862996
- length: 1444
- database: nuccore
- NCBI tax ID: 592015
GC content
@ref | GC-content | method |
---|---|---|
16360 | 46.6 | high performance liquid chromatography (HPLC) |
29890 | 46.6 |
External links
@ref: 16360
culture collection no.: DSM 22491, ATCC BAA-1850
straininfo link
- @ref: 86770
- straininfo: 406226
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21602364 | Description of Anaerobaculum hydrogeniformans sp. nov., an anaerobe that produces hydrogen from glucose, and emended description of the genus Anaerobaculum. | Maune MW, Tanner RS | Int J Syst Evol Microbiol | 10.1099/ijs.0.024349-0 | 2011 | Alaska, Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Extraction and Processing Industry, Fatty Acids/chemistry, Fermentation, Glucose/metabolism, Hydrogen/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Petroleum, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Water/*microbiology, Water Microbiology | Metabolism |
Phylogeny | 26791251 | Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium. | Hania WB, Bouanane-Darenfed A, Cayol JL, Ollivier B, Fardeau ML | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000910 | 2016 | ||
Genetics | 29954899 | Genome Sequence of Acetomicrobium hydrogeniformans OS1. | Cook LE, Gang SS, Ihlan A, Maune M, Tanner RS, McInerney MJ, Weinstock G, Lobos EA, Gunsalus RP | Genome Announc | 10.1128/genomeA.00581-18 | 2018 | ||
Phylogeny | 34582328 | Thermosynergistes pyruvativorans gen. nov., sp. nov., an anaerobic, pyruvate-degrading bacterium from Shengli oilfield, and proposal of Thermosynergistaceae fam. nov. in the phylum Synergistetes. | Yang M, Li J, Lv XM, Dai LR, Wu KJ, Tu B, Lawson PA, Tang YQ, Cheng L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005031 | 2021 | Anaerobiosis, Bacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Oil and Gas Fields, Phospholipids, Phylogeny, *Pyruvic Acid, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
16360 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22491) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22491 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
29890 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26263 | 28776041 | ||
43698 | Wajdi Ben Hania, Amel Bouanane-Darenfed, Jean-Luc Cayol, Bernard Ollivier, Marie-Laure Fardeau | 10.1099/ijsem.0.000910 | Reclassification of Anaerobaculum mobile, Anaerobaculum thermoterrenum, Anaerobaculum hydrogeniformans as Acetomicrobium mobile comb. nov., Acetomicrobium thermoterrenum comb. nov. and Acetomicrobium hydrogeniformans comb. nov., respectively, and emendation of the genus Acetomicrobium | 26791251 | IJSEM 66: 1506-1509 2016 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
86770 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406226.1 | StrainInfo: A central database for resolving microbial strain identifiers |