Name: Chitinophaga pinensis DSM 2589
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17741

Type strain:

Species: Chitinophaga pinensis

Culture col. no.: DSM 2589, IFO 15969, NBRC 15969, UQM 2036

Strain history: <- UQM <- V. Sangkhobol

NCBI tax ID(s): 79329 (species)

SI-ID 7718

LMG 13042, IFO 15969, NCIMB 11801, NBRC 15969, DSM 2589

Special Collections

DSMZ

Other strains from Chitinophaga pinensis

Section

Chitinophaga pinensis DSM 2589 is a bacterium that was isolated from freshwater.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	**Chitinophaga pinensis**
	Full Scientific Name (LPSN)	Chitinophaga pinensis Sangkhobol and Skerman 1981

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1143]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #1143]

Culture medium growth

[Ref.: #1143]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1143]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1143]			growth	22 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1143]	Sample type/isolated from	freshwater
[Ref.: #1143]	Geographic location (country and/or sea, region)	Queensland, Somerset Dam
[Ref.: #1143]	Country	Australia
[Ref.: #1143]	Country ISO 3 Code	AUS
[Ref.: #1143]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681009 (>99% sequence identity) for Chitinophaga from Microbeatlas

Aquatic Samples	37
Soil Samples	45
Animal Samples	36
Plant Samples	85
Total Samples	203

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1143]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Chitinophaga pinensis gene for 16S rRNA, partial sequence, strain: NBRC 15969	AB681009	1451	GenBank ENA	79329 tax ID	*

[Ref.: #1143]

GC-content

43.8 mol%

Availability in culture collections External links

[Ref.: #1143]

Culture collection no.

DSM 2589, IFO 15969, NBRC 15969, UQM 2036

[Ref.: #86731]

SI-ID 7718

References

#1143

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2589

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86731

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7718.1 )

* These data were automatically processed and therefore are not curated

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