Strain identifier
BacDive ID: 17741
Type strain: 
Species: Chitinophaga pinensis
Strain history: <- UQM <- V. Sangkhobol
NCBI tax ID(s): 79329 (species)
version 9 (current version)
General
@ref: 1143
BacDive-ID: 17741
DSM-Number: 2589
keywords: 16S sequence, Bacteria
description: Chitinophaga pinensis DSM 2589 is a bacterium that was isolated from freshwater.
NCBI tax id
- NCBI tax id: 79329
- Matching level: species
strain history
- @ref: 1143
- history: <- UQM <- V. Sangkhobol
doi: 10.13145/bacdive17741.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Chitinophagia
- order: Chitinophagales
- family: Chitinophagaceae
- genus: Chitinophaga
- species: Chitinophaga pinensis
- full scientific name: Chitinophaga pinensis Sangkhobol and Skerman 1981
@ref: 1143
domain: Bacteria
phylum: Bacteroidetes
class: Chitinophagia
order: Sphingobacteriales
family: Chitinophagaceae
genus: Chitinophaga
species: Chitinophaga pinensis
full scientific name: Chitinophaga pinensis Sangkhobol and Skerman 1981 emend. Hahnke et al. 2016
type strain: no
Culture and growth conditions
culture medium
- @ref: 1143
- name: CY-AGAR (DSMZ Medium 67)
- growth: yes
- link: https://mediadive.dsmz.de/medium/67
- composition: Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water
culture temp
- @ref: 1143
- growth: positive
- type: growth
- temperature: 22
Isolation, sampling and environmental information
isolation
- @ref: 1143
- sample type: freshwater
- geographic location: Queensland, Somerset Dam
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Freshwater
taxonmaps
- @ref: 69479
- File name: preview.99_81052.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_334;96_3567;97_4382;98_5611;99_81052&stattab=map
- Last taxonomy: Chitinophaga
- 16S sequence: AB681009
- Sequence Identity:
- Total samples: 203
- soil counts: 45
- aquatic counts: 37
- animal counts: 36
- plant counts: 85
Safety information
risk assessment
- @ref: 1143
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Chitinophaga pinensis gene for 16S rRNA, partial sequence, strain: NBRC 15969
- accession: AB681009
- length: 1451
- database: nuccore
- NCBI tax ID: 79329
GC content
- @ref: 1143
- GC-content: 43.8
External links
@ref: 1143
culture collection no.: DSM 2589, IFO 15969, NBRC 15969, UQM 2036
straininfo link
- @ref: 86731
- straininfo: 7718
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1143 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2589) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2589 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86731 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7718.1 | StrainInfo: A central database for resolving microbial strain identifiers |