Name: Chitinophaga pinensis DSM 2588
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17740

Type strain:

Species: Chitinophaga pinensis

Culture col. no.: DSM 2588, ATCC 43595, IFO 15968, NBRC 15968, UQM 2034, CIP 107364, ACM 2034, NCIMB 11800

Strain history: CIP <- 2002, ACM <- 1979, V. Sangtkhobol

NCBI tax ID(s): 485918 (strain), 79329 (species)

SI-ID 7622

LMG 13176, ATCC 43595, NCIB 11800, ACM 2034, IFO 15968, NCIMB 11800, KCTC 3412, NBRC 15968, DSM 2588, CIP 107364

Special Collections

Other strains from Chitinophaga pinensis

Section

Chitinophaga pinensis DSM 2588 is an obligate aerobe, spore-forming, Gram-negative bacterium that was isolated from pine litter.

Gram-negative
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	**Chitinophaga pinensis**
	Full Scientific Name (LPSN)	Chitinophaga pinensis Sangkhobol and Skerman 1981

Information on morphological and physiological properties Morphology

[Ref.: #43362]	Gram stain	negative
[Ref.: #121834]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %92.565

[Ref.: #43362]	Cell length	40 µm

[Ref.: #43362]	Cell width	0.5-0.8 µm

[Ref.: #43362]	Cell shape	rod-shaped
[Ref.: #121834]	Cell shape	rod-shaped

[Ref.: #121834]	Motility	no

[Ref.: #43362]	Pigment production	yes
[Ref.: #43362]	Pigmentation color	Yellowish
[Ref.: #43362]	Pigment name	Unknown
[Ref.: #121834]	Pigment production	no
[Ref.: #121834]	Pigment name	Flexirubin

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1142]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #1142]

Culture medium growth

[Ref.: #1142]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1142]

Culture medium composition

expand / minimize

[Ref.: #33117]

Culture medium

MEDIUM 342 - for Flexibacter filiformis

[Ref.: #33117]

Culture medium growth

[Ref.: #33117]

Culture medium composition

expand / minimize

[Ref.: #121834]

Culture medium

CIP Medium 35

[Ref.: #121834]

Culture medium growth

[Ref.: #121834]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1142]		growth	22 °C
[Ref.: #33117]		growth	22 °C
[Ref.: #43362]		optimum	24 °C
[Ref.: #43425]		growth	12-37 °C
[Ref.: #121834]	no	growth	41 °C
[Ref.: #121834]	no	growth	37 °C
[Ref.: #121834]	no	growth	15 °C
[Ref.: #121834]	no	growth	5 °C
[Ref.: #121834]		growth	22-30 °C
[Ref.: #121834]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #43362]			optimum	7
[Ref.: #43362]			growth	4-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121834]

Oxygen tolerance

obligate aerobe

[Ref.: #43425]	Spore description	Diameter of 0.8-0.9 µm, formed upon aging
[Ref.: #43425]	Type of spore	myxospore
[Ref.: #43425]	Ability of spore formation	yes

	Salt	Tested relation		Salt conc.
[Ref.: #43362]	NaCl		growth	0-1.5	%
[Ref.: #121834]	NaCl		growth	0	%
[Ref.: #121834]	NaCl	no	growth	2	%
[Ref.: #121834]	NaCl	no	growth	4	%
[Ref.: #121834]	NaCl	no	growth	6	%
[Ref.: #121834]	NaCl	no	growth	8	%
[Ref.: #121834]	NaCl	no	growth	10	%

[Ref.: #43425]

Observation

Resistant to 0.01 but not 0.1% sodium lauryl sulfate

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43425]	agar ChEBI	-	hydrolysis
[Ref.: #43362]	alginate ChEBI	-	hydrolysis
[Ref.: #43362]	casein	+	hydrolysis
[Ref.: #43362]	cellulose ChEBI	-	hydrolysis
[Ref.: #43362]	chitin ChEBI	+	hydrolysis
[Ref.: #43425]	dna ChEBI	-	hydrolysis
[Ref.: #121834]	esculin ChEBI	+	hydrolysis
[Ref.: #43362]	gelatin ChEBI	+	hydrolysis
[Ref.: #43362]	glucose ChEBI	+	builds acid from
[Ref.: #121834]	hippurate ChEBI	+	hydrolysis
[Ref.: #43362]	lactose ChEBI	+	builds acid from
[Ref.: #121834]	malonate ChEBI	-	assimilation
[Ref.: #43362]	nitrate ChEBI	-	reduction
[Ref.: #121834]	nitrate ChEBI	-	reduction
[Ref.: #121834]	nitrite ChEBI	-	reduction
[Ref.: #43362]	starch ChEBI	-	hydrolysis
[Ref.: #43362]	sucrose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #121834]	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes			no
[Ref.: #43362]	chloramphenicol ChEBI	yes	25	µg (disc)
[Ref.: #43362]	erythromycin ChEBI				yes	5	µg (disc)
[Ref.: #43362]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43362]	neomycin ChEBI				yes	10	µg (disc)
[Ref.: #43362]	penicillin g ChEBI				yes	4	Unit (disc)
[Ref.: #43362]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43362]	tetracycline ChEBI	yes	10	µg (disc)

	Metabolite	Production
[Ref.: #43425]	hydrogen sulfide ChEBI	no
[Ref.: #43425]	indole ChEBI	no
[Ref.: #121834]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121834]		acetoin ChEBI	-
[Ref.: #121834]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121834]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121834]	amylase	-
[Ref.: #121834]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121834]	caseinase	-	3.4.21.50
[Ref.: #43362]	catalase	+	1.11.1.6
[Ref.: #121834]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43362]	cytochrome oxidase	+	1.9.3.1
[Ref.: #121834]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #121834]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121834]	gelatinase	-
[Ref.: #121834]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #43425]	lipase	+
[Ref.: #121834]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #43425]	lipase (Tween 80)	+
[Ref.: #121834]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121834]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121834]	oxidase	-
[Ref.: #121834]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #43425]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #43425]	tryptophan deaminase	-	4.1.99.1
[Ref.: #121834]	tryptophan deaminase	-
[Ref.: #121834]	tween esterase	-
[Ref.: #43362]	urease	+	3.5.1.5
[Ref.: #121834]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121834]	2179	not determinedn.d.	+	-	+	+	+	-	+	+	-	+	+	+	+	-	-	+	+	+	+	-	+	+	+	+	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121834]	10299	-	+	+	-	-	+	+	-	+	-	+	+	+	+	-	+	+	+	-	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	allantoin degradation	100	9 of 9
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	isoleucine metabolism	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	lipid metabolism	77.42	24 of 31
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	isoprenoid biosynthesis	76.92	20 of 26
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	nitrate assimilation	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	oxidative phosphorylation	47.25	43 of 91
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1142]	Sample type/isolated from	pine litter
[Ref.: #1142]	Geographic location (country and/or sea, region)	Brisbane, Alderley
[Ref.: #1142]	Country	Australia
[Ref.: #1142]	Country ISO 3 Code	AUS
[Ref.: #1142]	Continent	Australia and Oceania

[Ref.: #43362]	Sample type/isolated from	from an infusion of litter from the base of a pine tree
[Ref.: #43362]	Geographic location (country and/or sea, region)	Alderley, Brisbane
[Ref.: #43362]	Country	Australia
[Ref.: #43362]	Country ISO 3 Code	AUS
[Ref.: #43362]	Continent	Australia and Oceania
[Ref.: #43362]	Geographic location	-27.0000°/153.0000°

[Ref.: #121834]	Sample type/isolated from	Pine needles
[Ref.: #121834]	Geographic location (country and/or sea, region)	Adlerly, Queensland
[Ref.: #121834]	Country	Australia
[Ref.: #121834]	Country ISO 3 Code	AUS
[Ref.: #121834]	Continent	Australia and Oceania
[Ref.: #121834]	Isolation date	1979
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681008 (>99% sequence identity) for Chitinophaga pinensis subclade from Microbeatlas

Aquatic Samples	723
Soil Samples	4418
Animal Samples	378
Plant Samples	1270
Total Samples	6789

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1142]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #43425]	Biosafety level	1
[Ref.: #121834]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Chitinophaga pinensis gene for 16S rRNA, partial sequence, strain: NBRC 15968	AB681008	1451	GenBank ENA	79329 tax ID	*
[Ref.: #124043]	Chitinophaga pinensis 16S ribosomal RNA gene, partial sequence.	AF078775	1458	GenBank ENA	485918 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chitinophaga pinensis DSM 2588	GCA_000024005	complete	GenBank ENA	485918 tax ID	*
[Ref.: #66792]	Chitinophaga pinensis DSM 2588	485918.6	complete	PATRIC	485918 tax ID	*
[Ref.: #66792]	Chitinophaga pinensis UQM 2034, DSM 2588	644736340	complete	JGI IMG/M	485918 tax ID	*

[Ref.: #1142]	GC-content	44.6 mol%
[Ref.: #43425]	GC-content	44.58 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #1142]	GC-content	45.2 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chitinophaga pinensis DSM 2588 DSM 2588 NCBI: GCA_000024005.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	78	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chitinophaga pinensis DSM 2588 DSM 2588 NCBI: GCA_000024005.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	92.565	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.308	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.584	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	63.051	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.49	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.75	no

Availability in culture collections External links

[Ref.: #1142]

Culture collection no.

DSM 2588, ATCC 43595, IFO 15968, NBRC 15968, UQM 2034, CIP 107364, ACM 2034, NCIMB 11800

[Ref.: #86730]

SI-ID 7622

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Functional Analysis of a Gene Cluster from Chitinophaga pinensis Involved in Biosynthesis of the Pyrrolidine Azasugar DAB-1.	Nunez C, Horenstein NA	J Nat Prod	10.1021/acs.jnatprod.9b00758	2019	*
Phylogeny	Chitinophaga rhizophila sp. nov., isolated from rhizosphere soil of banana.	Zhang XJ, Feng GD, Yang F, Zhu H, Yao Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.005118	2021	*
Phylogeny	Chitinophaga agri sp. nov., a bacterium isolated from soil of reclaimed land.	Lee SA, Heo J, Kim TW, Sang MK, Song J, Kwon SW, Weon HY	Arch Microbiol	10.1007/s00203-020-02066-9	2020	*
Phylogeny	In Silico Characterization of a Unique Plant-Like "Loopful" GH19 Chitinase from Newly Isolated Chitinophaga sp. YS-16.	Sharma S, Singh R, Kaur R	Curr Microbiol	10.1007/s00284-020-02022-2	2020	*
Phylogeny	Filobacterium rodentium gen. nov., sp. nov., a member of Filobacteriaceae fam. nov. within the phylum Bacteroidetes; includes a microaerobic filamentous bacterium isolated from specimens from diseased rodent respiratory tracts.	Ike F, Sakamoto M, Ohkuma M, Kajita A, Matsushita S, Kokubo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000685	2015	*
Phylogeny	Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes.	Anders H, Dunfield PF, Lagutin K, Houghton KM, Power JF, MacKenzie AD, Vyssotski M, Ryan JLJ, Hanssen EG, Moreau JW, Stott MB	Int J Syst Evol Microbiol	10.1099/ijs.0.057463-0	2014	*
Phylogeny	Chitinophaga oryziterrae sp. nov., isolated from the rhizosphere soil of rice (Oryza sativa L.).	Chung EJ, Park TS, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.036442-0	2012	*
Genetics	Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).	Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Saunders E, Detter JC, Brettin T, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lucas S	Stand Genomic Sci	10.4056/sigs.661199	2010	*
Phylogeny	Chitinophaga eiseniae sp. nov., isolated from vermicompost.	Yasir M, Chung EJ, Song GC, Bibi F, Jeon CO, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.023028-0	2010	*
	Fixed-target serial crystallography at the Structural Biology Center.	Sherrell DA, Lavens A, Wilamowski M, Kim Y, Chard R, Lazarski K, Rosenbaum G, Vescovi R, Johnson JL, Akins C, Chang C, Michalska K, Babnigg G, Foster I, Joachimiak A	J Synchrotron Radiat	10.1107/S1600577522007895	2022	*

References

#1142

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2588

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33117 ; Curators of the CIP;

#43362

Tijana Glavina Del Rio, Birte Abt, Stefan Spring, Alla Lapidus, Matt Nolan, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun-Juan Chang, Cynthia D. Jeffries, Patrick Chain, Elizabeth Saunders, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Susan Lucas: Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Stand Genomic Sci 2: 87 - 95 2010 ( DOI 10.1099/00207713-31-3-285 )

#43425

Vullapa Sangkhobol, V. B. D. Skerman: Chitinophaga, a New Genus of Chitinolytic Myxobacteria. IJSEM 31: 285 - 293 1981 ( DOI 10.4056/sigs.661199 , PubMed 21304681 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86730

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7622.1 )

#121834 Collection of Institut Pasteur ; Curators of the CIP; CIP 107364

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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