Name: Cryptosporangium japonicum YU 636-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17734

Type strain:

Species: Cryptosporangium japonicum

Strain Designation: YU 636-3

Culture col. no.: DSM 44713, HUT 6620, IFO 15966, JCM 10425, NBRC 15966, NCIMB 13629

Strain history: IFO 15966 <-- T. Tamura <-- M. Hayakawa YU 636-3.

NCBI tax ID(s): 1121371 (strain), 80872 (species)

SI-ID 60941

NCIMB 13629, IFO 15966, HUT 6620, JCM 10425, DSM 44713, NBRC 15966

Special Collections

Section

Cryptosporangium japonicum YU 636-3 is a bacterium that was isolated from soil from a sugar cane field.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Cryptosporangiales*
	Family	*Cryptosporangiaceae*
	Genus	*Cryptosporangium*
	Species	**Cryptosporangium japonicum**
	Full Scientific Name (LPSN)	Cryptosporangium japonicum Tamura et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #20103]	Colony color	Deep orange (2011)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 2

[Ref.: #20103]	Colony color	Deep orange (2011)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 3

[Ref.: #20103]	Colony color	Deep orange (2011)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 4

[Ref.: #20103]	Colony color	Deep orange (2011)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 5

[Ref.: #20103]	Colony color	Deep orange (2011)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 6

[Ref.: #20103]	Colony color	Clay brown (8003)
[Ref.: #20103]	Incubation period	10-14 days
[Ref.: #20103]	Cultivation medium used	ISP 7

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 2

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 3

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 4

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 5

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 6

[Ref.: #20103]	Multicellular complex forming ability	no
[Ref.: #20103]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12032]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium

ISP 3

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Culture medium

ISP 4

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Culture medium

ISP 5

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Culture medium

ISP 6

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Culture medium

ISP 7

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Medium recipe at MediaDive

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Medium recipe at MediaDive

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Culture medium composition

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	Temperatures	Kind of temperature		Temperature
[Ref.: #12032]			growth	28 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

	Metabolite	Utilization activity
[Ref.: #20103]	arabinose ChEBI	+
[Ref.: #20103]	cellulose ChEBI	+
[Ref.: #20103]	fructose ChEBI	+
[Ref.: #20103]	glucose ChEBI	+
[Ref.: #20103]	mannitol ChEBI	+
[Ref.: #20103]	myo-inositol ChEBI	+
[Ref.: #20103]	raffinose ChEBI	+
[Ref.: #20103]	rhamnose ChEBI	+
[Ref.: #20103]	sucrose ChEBI	+
[Ref.: #20103]	xylose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #20103]	884	not determinedn.d.	+	-	-	-	+	-	-	+	-	+	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12032]	Sample type/isolated from	soil from a sugar cane field
[Ref.: #12032]	Country	Japan
[Ref.: #12032]	Country ISO 3 Code	JPN
[Ref.: #12032]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a sugar cane field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Okinawa Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12032]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #20103]	Biosafety level	1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12032]	Cryptosporangium japonicum gene for 16S ribosomal RNA, partial sequence	D85466	1470	GenBank ENA	80872 tax ID
[Ref.: #20218]	Cryptosporangium japonicum gene for 16S rRNA, partial sequence	AB705306	1451	GenBank ENA	80872 tax ID	*

[Ref.: #12032]	GC-content	70 mol%
[Ref.: #67770]	GC-content	70.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #12032]

Culture collection no.

DSM 44713, HUT 6620, IFO 15966, JCM 10425, NBRC 15966, NCIMB 13629

[Ref.: #86724]

SI-ID 60941

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A new genus of the order Actinomycetales, Cryptosporangium gen. nov., with descriptions of Cryptosporangium arvum sp. nov. and Cryptosporangium japonicum sp. nov.	Tamura T, Hayakawa M, Hatano K	Int J Syst Bacteriol	10.1099/00207713-48-3-995	1998	*

References

#12032

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44713

#20103

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#86724

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60941.1 )

* These data were automatically processed and therefore are not curated

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