Name: Cryptosporangium arvum YU 629-21
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17733

Type strain:

Species: Cryptosporangium arvum

Strain Designation: YU 629-21

Culture col. no.: DSM 44712, HUT 6619, IFO 15965, JCM 10424, NBRC 15965, NCIMB 13630

Strain history: IFO 15965 <-- T. Tamura <-- M. Hayakawa YU 629-1.

NCBI tax ID(s): 927661 (strain), 80871 (species)

SI-ID 60942

NCIMB 13630, IFO 15965, HUT 6619, JCM 10424, DSM 44712, NBRC 15965

Section

Cryptosporangium arvum YU 629-21 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from cultivated soil from a vegetable field.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Cryptosporangiales*
	Family	*Cryptosporangiaceae*
	Genus	*Cryptosporangium*
	Species	**Cryptosporangium arvum**
	Full Scientific Name (LPSN)	Cryptosporangium arvum Tamura et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12031]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12031]

Culture medium growth

[Ref.: #12031]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12031]

Culture medium composition

expand / minimize

[Ref.: #12031]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #12031]

Culture medium growth

[Ref.: #12031]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12031]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12031]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #12031]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12031]	Sample type/isolated from	cultivated soil from a vegetable field
[Ref.: #12031]	Country	Japan
[Ref.: #12031]	Country ISO 3 Code	JPN
[Ref.: #12031]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a vegetable field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yamanashi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85465 (>99% sequence identity) for Cryptosporangium from Microbeatlas

Aquatic Samples	2
Soil Samples	99
Animal Samples	9
Plant Samples	19
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12031]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cryptosporangium arvum gene for 16S ribosomal RNA, partial sequence	D85465	1465	ENA	927661 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cryptosporangium arvum DSM 44712	GCA_000585375	scaffold	GenBank	927661 tax ID
[Ref.: #66792]	Cryptosporangium arvum DSM 44712	927661.3	wgs	PATRIC	927661 tax ID	*
[Ref.: #66792]	Cryptosporangium arvum YU 629-21, DSM 44712	2510065084	draft	JGI IMG/M	927661 tax ID	*

[Ref.: #12031]	GC-content	70 mol%
[Ref.: #67770]	GC-content	71.7 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	70.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cryptosporangium arvum DSM 44712 DSM 44712 NCBI: GCA_000585375.1
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cryptosporangium arvum DSM 44712 PATRIC: 927661.3
[Ref.: #69480]	motile	yes	57.623	no
[Ref.: #69480]	flagellated	no	90.467	no
[Ref.: #69480]	gram-positive	yes	86.807	no
[Ref.: #69480]	anaerobic	no	99.078	no
[Ref.: #69480]	halophile	no	95.735	no
[Ref.: #69480]	spore-forming	yes	90.265	no
[Ref.: #69480]	glucose-util	yes	89.562	no
[Ref.: #69480]	aerobic	yes	90.674	no
[Ref.: #69480]	thermophile	no	99.281	no
[Ref.: #69480]	glucose-ferment	no	90.665	no

Availability in culture collections External links

[Ref.: #12031]

Culture collection no.

DSM 44712, HUT 6619, IFO 15965, JCM 10424, NBRC 15965, NCIMB 13630

[Ref.: #86723]

SI-ID 60942

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A new genus of the order Actinomycetales, Cryptosporangium gen. nov., with descriptions of Cryptosporangium arvum sp. nov. and Cryptosporangium japonicum sp. nov.	Tamura T, Hayakawa M, Hatano K	Int J Syst Bacteriol	10.1099/00207713-48-3-995	1998	*

References

#12031

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44712

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86723

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID60942.1 )

* These data were automatically processed and therefore are not curated

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Cryptosporangium arvum DSM 44712 DSM 44712

Cryptosporangium arvum DSM 44712

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