Name: Thermolithobacter carboxydivorans R1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17653

Type strain:

Species: Thermolithobacter carboxydivorans

Strain Designation: R1, Z-R1

Culture col. no.: DSM 7242, VKM B-2359

Strain history: <- V.A. Svetlichny, Z-R1

NCBI tax ID(s): 335383 (species)

SI-ID 48389

DSM 7242, VKM B-2359

Special Collections

DSMZ

Section

Thermolithobacter carboxydivorans R1 is an anaerobe bacterium that was isolated from litoral hydrothermal sample.

anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Thermolithobacteria*
	Order	*Thermolithobacterales*
	Family	*Thermolithobacteraceae*
	Genus	*Thermolithobacter*
	Species	**Thermolithobacter carboxydivorans**
	Full Scientific Name (LPSN)	Thermolithobacter carboxydivorans corrig. Sokolova et al. 2007

Synonym

Thermolithobacter carboxidivorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3071]

Culture medium

CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)

[Ref.: #3071]

Culture medium growth

[Ref.: #3071]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3071]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3071]			growth	65 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3071]

Oxygen tolerance

anaerobe

[Ref.: #3071]

Name of produced compound

H₂

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3071]	Sample type/isolated from	litoral hydrothermal sample
[Ref.: #3071]	Geographic location (country and/or sea, region)	Raoul Island
[Ref.: #3071]	Country	New Zealand
[Ref.: #3071]	Country ISO 3 Code	NZL
[Ref.: #3071]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ095862 (>99% sequence identity) for Thermolithobacter from Microbeatlas

Aquatic Samples	55
Soil Samples	8
Animal Samples	15
Plant Samples	1
Total Samples	79

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3071]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3071]	Thermolithobacter carboxydivorans strain R1 16S ribosomal RNA gene, partial sequence	DQ095862	1546	GenBank ENA	335383 tax ID

[Ref.: #3071]	GC-content	52 mol%
[Ref.: #3071]	GC-content	38.8 mol%

Availability in culture collections External links

[Ref.: #3071]

Culture collection no.

DSM 7242, VKM B-2359

[Ref.: #86644]

SI-ID 48389

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov.	Sokolova T, Hanel J, Onyenwoke RU, Reysenbach AL, Banta A, Geyer R, Gonzalez JM, Whitman WB, Wiegel J	Extremophiles	10.1007/s00792-006-0022-5	2006	*

References

#3071

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7242

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86644

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48389.1 )

* These data were automatically processed and therefore are not curated

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