Strain identifier
BacDive ID: 17653
Type strain: 
Species: Thermolithobacter carboxydivorans
Strain Designation: R1, Z-R1
Strain history: <- V.A. Svetlichny, Z-R1
NCBI tax ID(s): 335383 (species)
version 8.1 (current version)
General
@ref: 3071
BacDive-ID: 17653
DSM-Number: 7242
keywords: 16S sequence, Bacteria, anaerobe, thermophilic
description: Thermolithobacter carboxydivorans R1 is an anaerobe, thermophilic bacterium that was isolated from litoral hydrothermal sample.
NCBI tax id
- NCBI tax id: 335383
- Matching level: species
strain history
- @ref: 3071
- history: <- V.A. Svetlichny, Z-R1
doi: 10.13145/bacdive17653.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Thermolithobacteria
- order: Thermolithobacterales
- family: Thermolithobacteraceae
- genus: Thermolithobacter
- species: Thermolithobacter carboxydivorans
- full scientific name: Thermolithobacter carboxydivorans corrig. Sokolova et al. 2007
synonyms
- @ref: 20215
- synonym: Thermolithobacter carboxidivorans
@ref: 3071
domain: Bacteria
phylum: Firmicutes
class: Thermolithobacteria
order: Thermolithobacterales
family: Thermolithobacteraceae
genus: Thermolithobacter
species: Thermolithobacter carboxydivorans
full scientific name: Thermolithobacter carboxydivorans Sokolova et al. 2007
strain designation: R1, Z-R1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3071
- name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)
- growth: yes
- link: https://mediadive.dsmz.de/medium/507
- composition: Name: CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507) Composition: NaHCO3 0.998004 g/l Na2S x 9 H2O 0.698603 g/l MgCl2 x 6 H2O 0.518962 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l KCl 0.329341 g/l CaCl2 x 2 H2O 0.289421 g/l Yeast extract 0.0499002 g/l Na2-EDTA x 2 H2O 0.00518962 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Riboflavin 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 3071
- growth: positive
- type: growth
- temperature: 65
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3071
- oxygen tolerance: anaerobe
compound production
- @ref: 3071
- compound: H2
Isolation, sampling and environmental information
isolation
- @ref: 3071
- sample type: litoral hydrothermal sample
- geographic location: Raoul Island
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_169790.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7552;96_35809;97_45485;98_111302;99_169790&stattab=map
- Last taxonomy: Thermolithobacter
- 16S sequence: DQ095862
- Sequence Identity:
- Total samples: 79
- soil counts: 8
- aquatic counts: 55
- animal counts: 15
- plant counts: 1
Safety information
risk assessment
- @ref: 3071
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3071
- description: Thermolithobacter carboxydivorans strain R1 16S ribosomal RNA gene, partial sequence
- accession: DQ095862
- length: 1546
- database: ena
- NCBI tax ID: 335383
GC content
| @ref | GC-content |
|---|---|
| 3071 | 52 |
| 3071 | 38.8 |
External links
@ref: 3071
culture collection no.: DSM 7242, VKM B-2359
straininfo link
- @ref: 86644
- straininfo: 48389
literature
- topic: Phylogeny
- Pubmed-ID: 17021657
- title: Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov.
- authors: Sokolova T, Hanel J, Onyenwoke RU, Reysenbach AL, Banta A, Geyer R, Gonzalez JM, Whitman WB, Wiegel J
- journal: Extremophiles
- DOI: 10.1007/s00792-006-0022-5
- year: 2006
- mesh: Anti-Bacterial Agents/pharmacology, Bacteria, Anaerobic/*classification/drug effects/genetics/growth & development/isolation & purification/metabolism, Base Composition, Carbon Monoxide/metabolism, *Chemoautotrophic Growth, DNA, Bacterial/analysis, Drug Resistance, Ferric Compounds/*metabolism, Ferrosoferric Oxide/metabolism, Geologic Sediments/*microbiology, Gram-Positive Asporogenous Rods/*classification/drug effects/genetics/growth & development/isolation & purification/metabolism, Hydrogen-Ion Concentration, Lipids/analysis, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Temperature, *Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3071 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7242) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7242 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 86644 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48389.1 | StrainInfo: A central database for resolving microbial strain identifiers |