Name: Bifidobacterium longum subsp. suis SU859
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1746

Type strain:

Species: Bifidobacterium longum subsp. suis

Strain Designation: SU859, SU 859

Culture col. no.: DSM 20211, ATCC 27533, JCM 1269, CCUG 35234, BCRC 14671, CGMCC 1.2184, CIP 103377, HAMBI 1381, KCTC 3229, LMG 11598, LMG 21814, NRRL B-41407, VTT E-021921

Strain history: CIP <- 1990, DSM, Bifidobacterium suis <- V. Scardovi <- D. Matteuzzi: strain SU 859

NCBI tax ID(s): 1437597 (strain), 1695 (subspecies)

SI-ID 9651

LMG 11598, DSM 20211, CIP 103377, JCM 1269, CCRC 14671, LMG21814, HAMBI 1381, NRRL B-41407, CGMCC 1.2184, ATCC 27533, BCRC 14671, CCUG 35234, VTT E-021921

Special Collections

Other strains from Bifidobacterium longum subsp. suis

Section

When using BacDive for research please cite our paper

Bifidobacterium longum subsp. suis SU859 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from pig faeces.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium longum subsp. suis**
	Full Scientific Name (LPSN)	Bifidobacterium longum subsp. suis (Matteuzzi et al. 1971) Mattarelli et al. 2008

Synonym

Bifidobacterium suis

Information on morphological and physiological properties Morphology

[Ref.: #120650]	Gram stain	positive

[Ref.: #120650]	Cell shape	rod-shaped

[Ref.: #120650]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %92.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8480]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8480]

Culture medium growth

[Ref.: #8480]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8480]

Culture medium composition

expand / minimize

[Ref.: #40625]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #40625]

Culture medium growth

[Ref.: #40625]

Culture medium composition

expand / minimize

[Ref.: #120650]

Culture medium

CIP Medium 20

[Ref.: #120650]

Culture medium growth

[Ref.: #120650]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8480]	growth	37 °C
[Ref.: #40625]	growth	37 °C
[Ref.: #52614]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8480]	Oxygen tolerance	anaerobe
[Ref.: #52614]	Oxygen tolerance	anaerobe
[Ref.: #120650]	Oxygen tolerance	anaerobe

[Ref.: #125438]	Ability of spore formation	no Confidence in %90.846
[Ref.: #125439]	Ability of spore formation	no Confidence in %95.8

[Ref.: #8480]	Murein short key	A21.03
[Ref.: #8480]	Murein types	A3ß L-Orn-L-Ser-L-Ala-L-Thr-L-Ala

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120650]	nitrate ChEBI	-	reduction
[Ref.: #120650]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120650]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120650]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120650]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120650]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8480]	15370	-	-	-	-	+	not determinedn.d.	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	+	+	+	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120650]	7518	-	-	-	-	-	+	-	-	-	+	-	-	+	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8480]	Sample type/isolated from	pig faeces

[Ref.: #52614]	Sample type/isolated from	Pig feces

[Ref.: #67770]	Sample type/isolated from	Pig feces

[Ref.: #120650]	Sample type/isolated from	Animal, Pig, feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071805 (>99% sequence identity) for Bifidobacterium longum subclade from Microbeatlas

Aquatic Samples	7450
Soil Samples	1795
Animal Samples	197025
Plant Samples	785
Total Samples	207055

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8480]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120650]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium longum subsp. suis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1269	LC071805	1424	GenBank ENA	1695 tax ID
[Ref.: #67770]	Bifidobacterium longum subsp. suis gene for 16S ribosomal RNA, partial sequence	AB437360	1506	GenBank ENA	1695 tax ID
[Ref.: #20218]	Bifidobacterium longum subsp. suis strain ATCC 27533 16S ribosomal RNA gene, partial sequence	M58743	1470	GenBank ENA	1695 tax ID	*
[Ref.: #20218]	Bifidobacterium longum 16S-23S ribosomal RNA intergenic spacer, culture collection DSM 20211	AM991324	480	GenBank ENA	216816 tax ID	*
[Ref.: #20218]	Bifidobacterium longum subsp. suis strain DSM 20211 16S ribosomal RNA gene, partial sequence	GQ487646	142	GenBank ENA	1695 tax ID	*
[Ref.: #20218]	Bifidobacterium longum subsp. suis gene for 16S rRNA, partial sequence, strain: JCM 1269	AB116353	472	GenBank ENA	1695 tax ID	*
[Ref.: #20218]	Bifidobacterium longum gene for 16S rRNA, partial sequence, strain: JCM 1269	AB507104	659	GenBank ENA	216816 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium longum subsp. suis DSM 20211	GCA_000771285	contig	GenBank ENA	1437597 tax ID
[Ref.: #67770]	Bifidobacterium longum subsp. suis LMG 21814	GCA_000741625	contig	GenBank ENA	1695 tax ID
[Ref.: #66792]	Bifidobacterium longum subsp. suis DSM 20211	1437597.3	wgs	PATRIC	1437597 tax ID	*
[Ref.: #66792]	Bifidobacterium longum subsp. suis strain LMG 21814	1695.3	wgs	PATRIC	1695 tax ID	*
[Ref.: #66792]	Bifidobacterium longum suis LMG 21814	2600254974	draft	JGI IMG/M	1695 tax ID	*
[Ref.: #66792]	Bifidobacterium longum suis DSM 20211	2636416037	draft	JGI IMG/M	1437597 tax ID	*

[Ref.: #8480]	GC-content	63.3 mol%
[Ref.: #67770]	GC-content	63.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium longum strain Su859 PATRIC: 216816.127
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	84.719	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	76.508	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.846	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	90.906	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium longum subsp. suis DSM 20211 NCBI: GCA_000771285
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	80.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	66.7

Availability in culture collections External links

[Ref.: #8480]

Culture collection no.

DSM 20211, ATCC 27533, JCM 1269, CCUG 35234, BCRC 14671, CGMCC 1.2184, CIP 103377, HAMBI 1381, KCTC 3229, LMG 11598, LMG 21814, NRRL B-41407, VTT E-021921

[Ref.: #71393]

SI-ID 9651

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to reclassify the three biotypes of Bifidobacterium longum as three subspecies: Bifidobacterium longum subsp. longum subsp. nov., Bifidobacterium longum subsp. infantis comb. nov. and Bifidobacterium longum subsp. suis comb. nov.	Mattarelli P, Bonaparte C, Pot B, Biavati B	Int J Syst Evol Microbiol	10.1099/ijs.0.65319-0	2008	*
	Genomic Island-Mediated Horizontal Transfer of the Erythromycin Resistance Gene erm(X) among Bifidobacteria.	Li B, Chen D, Lin F, Wu C, Cao L, Chen H, Hu Y, Yin Y	Appl Environ Microbiol	10.1128/aem.00410-22	2022	*

References

#8480

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20211

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40625 ; Curators of the CIP;
#52614 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35234

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71393

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9651.1 )

#120650 Collection of Institut Pasteur ; Curators of the CIP; CIP 103377

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bifidobacterium longum subsp. suis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Bifidobacterium longum strain Su859

Bifidobacterium longum subsp. suis DSM 20211

Change proposal

Change proposal