Name: Labrys wisconsinensis W1215-PCA-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17414

Type strain:

Species: Labrys wisconsinensis

Strain Designation: W1215-PCA-4

Culture col. no.: DSM 19619, NRRL B-51088

Strain history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; W1215-PCA-4

NCBI tax ID(s): 425677 (species)

SI-ID 408334

DSM 19619

Special Collections

Other strains from Labrys wisconsinensis

Section

Labrys wisconsinensis W1215-PCA-4 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Water sample.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Labrys*
	Species	**Labrys wisconsinensis**
	Full Scientific Name (LPSN)	Labrys wisconsinensis Albert et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29527]	Gram stain	negative

[Ref.: #29527]	Cell length	02-03 µm

[Ref.: #29527]	Cell width	1-1.5 µm

[Ref.: #29527]	Cell shape	rod-shaped

[Ref.: #29527]	Motility	yes

[Ref.: #29527]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8211]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8211]

Culture medium growth

[Ref.: #8211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8211]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8211]	growth	28 °C
[Ref.: #29527]	growth	10-40 °C
[Ref.: #29527]	optimum	25 °C

	pH	Kind of pH		pH
[Ref.: #29527]			optimum	7
[Ref.: #29527]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29527]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29527]		NaCl		growth	0-1.2	%
[Ref.: #29527]		NaCl		optimum	0-1.2	%

[Ref.: #29527]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29527]	arabinose ChEBI	+	carbon source
[Ref.: #29527]	cellobiose ChEBI	+	carbon source
[Ref.: #29527]	fructose ChEBI	+	carbon source
[Ref.: #29527]	ribose ChEBI	+	carbon source
[Ref.: #29527]	sucrose ChEBI	+	carbon source
[Ref.: #29527]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29527]		catalase	+	1.11.1.6
[Ref.: #29527]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8211]	Sample type/isolated from	Water sample
[Ref.: #8211]	Geographic location (country and/or sea, region)	Wisconsin, Lake Michigan
[Ref.: #8211]	Country	USA
[Ref.: #8211]	Country ISO 3 Code	USA
[Ref.: #8211]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF382666 (>99% sequence identity) for Labrys wisconsinensis subclade from Microbeatlas

Aquatic Samples	49
Soil Samples	557
Animal Samples	243
Plant Samples	149
Total Samples	998

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8211]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8211]	Labrys wisconsinensis strain W1215-PCA4 16S ribosomal RNA gene, partial sequence	EF382666	1481	GenBank ENA	425677 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Labrys wisconsinensis DSM 19619	2928284429	draft	JGI IMG/M	425677 tax ID	*

Availability in culture collections External links

[Ref.: #8211]

Culture collection no.

DSM 19619, NRRL B-51088

[Ref.: #86410]

SI-ID 408334

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.	Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014977-0	2009	*

References

#8211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19619

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29527

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25924 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86410

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408334.1 )

#25924

IJSEM 1570 2010 ( DOI 10.1099/ijs.0.014977-0 , PubMed 19684322 )

* These data were automatically processed and therefore are not curated

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